CK939539

Overview
NameCK939539
Unique NameCK939539
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length628
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RASN_XENLA (GTPase NRas OS=Xenopus laevis GN=nras PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.078e-16
Identity = 46/144 (31.94%), Postives = 82/144 (56.94%), Query Frame = 1
Query:  199 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            +K +++G  GVGKS L +Q     F   +D TI   +  + + ID +   L I DTAGQE + ++   Y R   G L V+ I   ++F  + ++ E  ++  ++ ++ ++L+GNKCDL   R V T++ ++ A+ +G+ F+E S
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINAYREQIKRVKDSDDVPMVLVGNKCDLP-SRTVDTKQAQELARSYGIPFIETS 145          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RASN_CHICK (GTPase NRas OS=Gallus gallus GN=NRAS PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.078e-16
Identity = 47/144 (32.64%), Postives = 81/144 (56.25%), Query Frame = 1
Query:  199 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            +K +++G  GVGKS L +Q     F   +D TI   +  + + ID +   L I DTAGQE + ++   Y R   G L V+ I   ++F  +  + E  ++  ++ ++ ++L+GNKCDL   R V T++ ++ AK +G+ F+E S
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLP-TRTVDTKQAQELAKSYGIPFIETS 145          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RASK_RAT (GTPase KRas OS=Rattus norvegicus GN=Kras PE=1 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 7.078e-16
Identity = 46/144 (31.94%), Postives = 81/144 (56.25%), Query Frame = 1
Query:  199 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            +K +++G  GVGKS L +Q     F   +D TI   +  + + ID +   L I DTAGQE + ++   Y R   G L V+ I   ++F  +  + E  ++  ++ ++ ++L+GNKCDL   R V T++ ++ A+ +G+ F+E S
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP-SRTVDTKQAQELARSYGIPFIETS 145          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RASK_MOUSE (GTPase KRas OS=Mus musculus GN=Kras PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.078e-16
Identity = 46/144 (31.94%), Postives = 81/144 (56.25%), Query Frame = 1
Query:  199 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            +K +++G  GVGKS L +Q     F   +D TI   +  + + ID +   L I DTAGQE + ++   Y R   G L V+ I   ++F  +  + E  ++  ++ ++ ++L+GNKCDL   R V T++ ++ A+ +G+ F+E S
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP-SRTVDTKQAQELARSYGIPFIETS 145          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RAN_XENTR (GTP-binding nuclear protein Ran OS=Xenopus tropicalis GN=ran PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.078e-16
Identity = 41/121 (33.88%), Postives = 68/121 (56.20%), Query Frame = 1
Query:  199 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 561
            FK +++GD G GK+  + +     F+  +  T+GVE    +   +  PIK  +WDTAGQE F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+  R+
Sbjct:   11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDRK 130          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RAN_XENLA (GTP-binding nuclear protein Ran OS=Xenopus laevis GN=ran PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 7.078e-16
Identity = 41/121 (33.88%), Postives = 68/121 (56.20%), Query Frame = 1
Query:  199 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 561
            FK +++GD G GK+  + +     F+  +  T+GVE    +   +  PIK  +WDTAGQE F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+  R+
Sbjct:   11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDRK 130          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RAN_RAT (GTP-binding nuclear protein Ran OS=Rattus norvegicus GN=Ran PE=1 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 7.078e-16
Identity = 41/121 (33.88%), Postives = 68/121 (56.20%), Query Frame = 1
Query:  199 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 561
            FK +++GD G GK+  + +     F+  +  T+GVE    +   +  PIK  +WDTAGQE F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+  R+
Sbjct:   11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDRK 130          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RAN_PONAB (GTP-binding nuclear protein Ran OS=Pongo abelii GN=RAN PE=2 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 7.078e-16
Identity = 41/121 (33.88%), Postives = 68/121 (56.20%), Query Frame = 1
Query:  199 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 561
            FK +++GD G GK+  + +     F+  +  T+GVE    +   +  PIK  +WDTAGQE F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+  R+
Sbjct:   11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDRK 130          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RAN_MOUSE (GTP-binding nuclear protein Ran OS=Mus musculus GN=Ran PE=1 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 7.078e-16
Identity = 41/121 (33.88%), Postives = 68/121 (56.20%), Query Frame = 1
Query:  199 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 561
            FK +++GD G GK+  + +     F+  +  T+GVE    +   +  PIK  +WDTAGQE F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+  R+
Sbjct:   11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDRK 130          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RAN_MACFA (GTP-binding nuclear protein Ran OS=Macaca fascicularis GN=RAN PE=2 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 7.078e-16
Identity = 41/121 (33.88%), Postives = 68/121 (56.20%), Query Frame = 1
Query:  199 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 561
            FK +++GD G GK+  + +     F+  +  T+GVE    +   +  PIK  +WDTAGQE F  +   YY  A  A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+  R+
Sbjct:   11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDRK 130          
The following BLAST results are available for this feature:
BLAST of CK939539 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RASN_XENLA7.078e-1631.94GTPase NRas OS=Xenopus laevis GN=nras PE=2 SV=1[more]
RASN_CHICK7.078e-1632.64GTPase NRas OS=Gallus gallus GN=NRAS PE=2 SV=1[more]
RASK_RAT7.078e-1631.94GTPase KRas OS=Rattus norvegicus GN=Kras PE=1 SV=3[more]
RASK_MOUSE7.078e-1631.94GTPase KRas OS=Mus musculus GN=Kras PE=1 SV=1[more]
RAN_XENTR7.078e-1633.88GTP-binding nuclear protein Ran OS=Xenopus tropica... [more]
RAN_XENLA7.078e-1633.88GTP-binding nuclear protein Ran OS=Xenopus laevis ... [more]
RAN_RAT7.078e-1633.88GTP-binding nuclear protein Ran OS=Rattus norvegic... [more]
RAN_PONAB7.078e-1633.88GTP-binding nuclear protein Ran OS=Pongo abelii GN... [more]
RAN_MOUSE7.078e-1633.88GTP-binding nuclear protein Ran OS=Mus musculus GN... [more]
RAN_MACFA7.078e-1633.88GTP-binding nuclear protein Ran OS=Macaca fascicul... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004749_B03 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IF_B03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939539 ID=CK939539; Name=CK939539; organism=Citrus sinensis; type=EST; length=628bp
GGGGAAAACTAATGAACACGCCTTAGTAGTAGTAGTAGTTAAAAATAATT
TTGTACCTCTTATTATTTTTCCAAGTTGTTTCAAATCGTTTCCTTTCTCG
TTTCCTCCTGTTCTAAATCAAAAGTGAAATCCATAAATAAATTGACTCCT
GATTGATCGGTCCTCATCAATCAAACAAACATGTCGTACGCTTACCTCTT
CAAGTACATCATCATCGGCGATACCGGAGTTGGTAAATCATGTCTTCTTC
TCCAATTCACGGATAAGCGGTTTCAGCCGGTTCACGACCTAACTATAGGA
GTTGAATTTGGGGCCAGAATGATCACCATCGATAACAAACCGATCAAACT
CCAAATCTGGGACACGGCTGGTCAAGAATCCTTCAGATCTATTACCAGGT
CTTACTATAGAGGGGCTGCTGGTGCATTACTTGTCTATGATATTACCAGG
AGGGAAACTTTTAATCACTTGGCTAGCTGGCTGGAGGATGCAAGGCAGCA
TGCAAATGCAAACATGACTATTATGCTCATTGGTAACAAGTGTGATCTTG
CTCATAGAAGGGCTGTGAGTACGGAGGAAGGTGAGCAGTTTGCAAAGGAG
CATGGATTGATCTTCATGGAAGCCTCTG
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