CK939539

Overview
NameCK939539
Unique NameCK939539
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length628
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RIC2_ORYSJ (Ras-related protein RIC2 OS=Oryza sativa subsp. japonica GN=RIC2 PE=2 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 3.371e-42
Identity = 81/147 (55.10%), Postives = 103/147 (70.07%), Query Frame = 1
Query:  187 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + +D K +K QIWDTAGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL++ R H + N+ +ML+GNK DL H  AV T+EG+ FA+   L FME S
Sbjct:   11 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLQVDGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLKELRDHTDPNIVVMLVGNKSDLRHLVAVQTDEGKAFAERESLYFMETS 157          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RB11D_TOBAC (Ras-related protein Rab11D OS=Nicotiana tabacum GN=RAB11D PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 4.403e-42
Identity = 79/145 (54.48%), Postives = 107/145 (73.79%), Query Frame = 1
Query:  193 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            Y+FK ++IGD+ VGKS +L +F    F      TIGVEF  R + I +K +K QIWDTAGQE +R++T +YYRGA GA+LVYDIT+R+TF+H+  WLE+ R HA+ N+ IMLIGNK DL  +RAV TE+ ++FA++ GL F+E S
Sbjct:   14 YVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLAIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRAHADRNIVIMLIGNKTDLEDQRAVPTEDAKEFAQKEGLFFLETS 158          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RGP2_ORYSJ (Ras-related protein RGP2 OS=Oryza sativa subsp. japonica GN=RGP2 PE=2 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 5.750e-42
Identity = 79/147 (53.74%), Postives = 110/147 (74.83%), Query Frame = 1
Query:  187 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            Y+YLFK ++IGD+GVGKS +L +FT   F      TIGVEF  + + ++ K IK QIWDTAGQE +R+IT +YYRGA GALLVYDIT+R++F+++  WL + R HA++++ IM++GNK DL H RAVS +EG+  A++ GL F+E S
Sbjct:    9 YSYLFKMVLIGDSGVGKSNILSRFTRNHFSLDSKSTIGVEFATKSLQMEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQSFDNVHRWLRELRDHADSSIVIMMVGNKSDLIHLRAVSEDEGKALAEKEGLFFLETS 155          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RB11B_TOBAC (Ras-related protein Rab11B OS=Nicotiana tabacum GN=RAB11B PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 5.750e-42
Identity = 82/147 (55.78%), Postives = 104/147 (70.75%), Query Frame = 1
Query:  187 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            Y YLFK ++IGD+GVGKS LL +F+   F      TIGVEF  R I +D+K +K QIWDTAGQE +R+IT +YYRGA GAL+VYDITR  TF ++  WL++ R H + N+ IML+GNK DL H RAVSTE+ + FA+     FME S
Sbjct:   11 YDYLFKLVLIGDSGVGKSNLLSRFSRNEFNLESKSTIGVEFATRSIRVDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALVVYDITRHVTFENVERWLKELRDHTDQNIVIMLVGNKADLRHLRAVSTEDAKAFAERENTFFMETS 157          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RAA2C_ARATH (Ras-related protein RABA2c OS=Arabidopsis thaliana GN=RABA2C PE=2 SV=4)

HSP 1 Score: 170.629 bits (431), Expect = 5.750e-42
Identity = 80/155 (51.61%), Postives = 111/155 (71.61%), Query Frame = 1
Query:  163 LINQTNMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            + ++ +  Y YLFK ++IGD+GVGKS +L +FT   F      TIGVEF  R   ++ K IK QIWDTAGQE +R+IT +YYRGA GALLVYDIT+R+TF+++  WL + R HA++N+ IM+ GNK DL H R+V+ E+G+  A++ GL F+E S
Sbjct:    1 MTHRVDQEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTTQVEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQSLAEKEGLSFLETS 155          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RAA2A_ARATH (Ras-related protein RABA2a OS=Arabidopsis thaliana GN=RABA2A PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 5.750e-42
Identity = 80/147 (54.42%), Postives = 109/147 (74.15%), Query Frame = 1
Query:  187 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + ++ + +K QIWDTAGQE +R+IT +YYRGA GALLVYD+T+  TF +++ WL++ R HA++N+ IMLIGNK DL H RAV+TE+ + +A++ GL F+E S
Sbjct:    9 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTVKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMLIGNKTDLKHLRAVATEDAQSYAEKEGLSFIETS 155          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RAA1A_ARATH (Ras-related protein RABA1a OS=Arabidopsis thaliana GN=RABA1A PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 7.510e-42
Identity = 81/147 (55.10%), Postives = 101/147 (68.71%), Query Frame = 1
Query:  187 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  +   ++ K +K QIWDTAGQE +R+IT +YYRGA GALL+YD+TR  TF + A WL + R H + N+ +MLIGNKCDL H  AV TEE + FA+   L FME S
Sbjct:   10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTTKVEGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLIYDVTRHATFENAARWLRELRGHTDPNIVVMLIGNKCDLRHLVAVKTEEAKAFAERESLYFMETS 156          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: YPTC6_CHLRE (Ras-related protein YPTC6 OS=Chlamydomonas reinhardtii GN=YPTC6 PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 9.809e-42
Identity = 83/147 (56.46%), Postives = 103/147 (70.07%), Query Frame = 1
Query:  187 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R I +D K IK QIWDTAGQE +R+IT +YYRGA GALLVYDIT+  TF ++  WL++ R HA++N+ IML+GNK DL H R V TE  + F +  GL F+E S
Sbjct:    9 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKSVTFENVERWLKELRDHADSNIVIMLVGNKSDLKHLRDVQTEVAQAFCEREGLSFIETS 155          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RB11E_LOTJA (Ras-related protein Rab11E OS=Lotus japonicus GN=RAB11E PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 9.809e-42
Identity = 83/147 (56.46%), Postives = 102/147 (69.39%), Query Frame = 1
Query:  187 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  + + ID K IK QIWDTAGQE +R+IT +YYRGA GALLVYD+TR  TF     WL++ R H + N+ +MLIGNK DL H   VSTE+G+ FA++  L FME S
Sbjct:   10 YDYLFKLVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSLNIDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRSTTFETAGRWLKELRDHTDPNIVVMLIGNKSDLRHLVTVSTEDGKAFAEKESLYFMETS 156          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RYL1_YARLI (Ras-like GTP-binding protein RYL1 OS=Yarrowia lipolytica GN=RYL1 PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.281e-41
Identity = 76/154 (49.35%), Postives = 113/154 (73.38%), Query Frame = 1
Query:  166 INQTNMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            ++ +  +Y  L K ++IGD+GVGKSCLLL+F + +F P    TIG++F  R I I N+ +KLQ+WDTAGQE FR+IT +YYRGA G LLVYD+T  ++FN++ +W ++ + +AN  + ++L+GNKCDL  +R VSTE+G+  A + G+ F+EAS
Sbjct:    1 MSHSQRTYDLLIKLLLIGDSGVGKSCLLLRFCEDQFTPSFITTIGIDFKIRTIDIGNQRVKLQVWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFNNIENWYQNVQSYANEGVELILVGNKCDLDEKRVVSTEQGQALADKFGIPFLEAS 154          
The following BLAST results are available for this feature:
BLAST of CK939539 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RIC2_ORYSJ3.371e-4255.10Ras-related protein RIC2 OS=Oryza sativa subsp. ja... [more]
RB11D_TOBAC4.403e-4254.48Ras-related protein Rab11D OS=Nicotiana tabacum GN... [more]
RGP2_ORYSJ5.750e-4253.74Ras-related protein RGP2 OS=Oryza sativa subsp. ja... [more]
RB11B_TOBAC5.750e-4255.78Ras-related protein Rab11B OS=Nicotiana tabacum GN... [more]
RAA2C_ARATH5.750e-4251.61Ras-related protein RABA2c OS=Arabidopsis thaliana... [more]
RAA2A_ARATH5.750e-4254.42Ras-related protein RABA2a OS=Arabidopsis thaliana... [more]
RAA1A_ARATH7.510e-4255.10Ras-related protein RABA1a OS=Arabidopsis thaliana... [more]
YPTC6_CHLRE9.809e-4256.46Ras-related protein YPTC6 OS=Chlamydomonas reinhar... [more]
RB11E_LOTJA9.809e-4256.46Ras-related protein Rab11E OS=Lotus japonicus GN=R... [more]
RYL1_YARLI1.281e-4149.35Ras-like GTP-binding protein RYL1 OS=Yarrowia lipo... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004749_B03 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IF_B03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939539 ID=CK939539; Name=CK939539; organism=Citrus sinensis; type=EST; length=628bp
GGGGAAAACTAATGAACACGCCTTAGTAGTAGTAGTAGTTAAAAATAATT
TTGTACCTCTTATTATTTTTCCAAGTTGTTTCAAATCGTTTCCTTTCTCG
TTTCCTCCTGTTCTAAATCAAAAGTGAAATCCATAAATAAATTGACTCCT
GATTGATCGGTCCTCATCAATCAAACAAACATGTCGTACGCTTACCTCTT
CAAGTACATCATCATCGGCGATACCGGAGTTGGTAAATCATGTCTTCTTC
TCCAATTCACGGATAAGCGGTTTCAGCCGGTTCACGACCTAACTATAGGA
GTTGAATTTGGGGCCAGAATGATCACCATCGATAACAAACCGATCAAACT
CCAAATCTGGGACACGGCTGGTCAAGAATCCTTCAGATCTATTACCAGGT
CTTACTATAGAGGGGCTGCTGGTGCATTACTTGTCTATGATATTACCAGG
AGGGAAACTTTTAATCACTTGGCTAGCTGGCTGGAGGATGCAAGGCAGCA
TGCAAATGCAAACATGACTATTATGCTCATTGGTAACAAGTGTGATCTTG
CTCATAGAAGGGCTGTGAGTACGGAGGAAGGTGAGCAGTTTGCAAAGGAG
CATGGATTGATCTTCATGGAAGCCTCTG
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