CK939539

Overview
NameCK939539
Unique NameCK939539
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length628
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RB11C_TOBAC (Ras-related protein Rab11C OS=Nicotiana tabacum GN=RAB11C PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 3.727e-41
Identity = 77/145 (53.10%), Postives = 106/145 (73.10%), Query Frame = 1
Query:  193 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            Y+FK ++IGD+ VGK+ +L +F    F      TIGVEF  R + I +K +K QIWDTAGQE +R++T +YYRGA GA+LVYDIT+R+TF+H+  WLE+ R HA+ N+ IML GNK DL  +RAV TE+ ++FA++ GL F+E S
Sbjct:   14 YVFKVVLIGDSAVGKTQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRAHADRNIVIMLTGNKTDLEDQRAVPTEDAKEFAQKEGLFFLETS 158          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RAB8A_RAT (Ras-related protein Rab-8A OS=Rattus norvegicus GN=Rab8a PE=2 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 4.868e-41
Identity = 75/148 (50.68%), Postives = 110/148 (74.32%), Query Frame = 1
Query:  184 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            +Y YLFK ++IGD+GVGK+C+L +F++  F      TIG++F  R I +D K IKLQIWDTAGQE FR+IT +YYRGA G +LVYDIT  ++F+++ +W+ +  +HA+A++  M++GNKCD+  +R VS E GE+ A ++G+ FME S
Sbjct:    4 TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETS 151          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RAB8A_MOUSE (Ras-related protein Rab-8A OS=Mus musculus GN=Rab8a PE=1 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 4.868e-41
Identity = 75/148 (50.68%), Postives = 110/148 (74.32%), Query Frame = 1
Query:  184 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            +Y YLFK ++IGD+GVGK+C+L +F++  F      TIG++F  R I +D K IKLQIWDTAGQE FR+IT +YYRGA G +LVYDIT  ++F+++ +W+ +  +HA+A++  M++GNKCD+  +R VS E GE+ A ++G+ FME S
Sbjct:    4 TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETS 151          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RAB8A_MACFA (Ras-related protein Rab-8A OS=Macaca fascicularis GN=RAB8A PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 4.868e-41
Identity = 75/148 (50.68%), Postives = 110/148 (74.32%), Query Frame = 1
Query:  184 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            +Y YLFK ++IGD+GVGK+C+L +F++  F      TIG++F  R I +D K IKLQIWDTAGQE FR+IT +YYRGA G +LVYDIT  ++F+++ +W+ +  +HA+A++  M++GNKCD+  +R VS E GE+ A ++G+ FME S
Sbjct:    4 TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETS 151          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RAB8A_HUMAN (Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8A PE=1 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 4.868e-41
Identity = 75/148 (50.68%), Postives = 110/148 (74.32%), Query Frame = 1
Query:  184 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            +Y YLFK ++IGD+GVGK+C+L +F++  F      TIG++F  R I +D K IKLQIWDTAGQE FR+IT +YYRGA G +LVYDIT  ++F+++ +W+ +  +HA+A++  M++GNKCD+  +R VS E GE+ A ++G+ FME S
Sbjct:    4 TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETS 151          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RAB8A_DICDI (Ras-related protein Rab-8A OS=Dictyostelium discoideum GN=rab8A PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 4.868e-41
Identity = 76/148 (51.35%), Postives = 107/148 (72.30%), Query Frame = 1
Query:  184 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            +Y YL K ++IGD+GVGKSCLLL+F++  F P    TIG++F  R I ++ K IKLQIWDTAGQE FR+IT +YYRGA G LLVYD+T  ++F ++ +W+ +  QHA  ++  MLIGNKCD+A ++ V +  G+  A E+G+ F+E S
Sbjct:   11 AYDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELEGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGNIRNWIRNIEQHATDSVNKMLIGNKCDMAEKKVVDSSRGKSLADEYGIKFLETS 158          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RAB8A_CANFA (Ras-related protein Rab-8A OS=Canis familiaris GN=RAB8A PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 4.868e-41
Identity = 75/148 (50.68%), Postives = 110/148 (74.32%), Query Frame = 1
Query:  184 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            +Y YLFK ++IGD+GVGK+C+L +F++  F      TIG++F  R I +D K IKLQIWDTAGQE FR+IT +YYRGA G +LVYDIT  ++F+++ +W+ +  +HA+A++  M++GNKCD+  +R VS E GE+ A ++G+ FME S
Sbjct:    4 TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETS 151          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RAB8A_BOVIN (Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 4.868e-41
Identity = 75/148 (50.68%), Postives = 110/148 (74.32%), Query Frame = 1
Query:  184 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            +Y YLFK ++IGD+GVGK+C+L +F++  F      TIG++F  R I +D K IKLQIWDTAGQE FR+IT +YYRGA G +LVYDIT  ++F+++ +W+ +  +HA+A++  M++GNKCD+  +R VS E GE+ A ++G+ FME S
Sbjct:    4 TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETS 151          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RAB8B_RAT (Ras-related protein Rab-8B OS=Rattus norvegicus GN=Rab8b PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 8.304e-41
Identity = 74/148 (50.00%), Postives = 110/148 (74.32%), Query Frame = 1
Query:  184 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            +Y YLFK ++IGD+GVGK+CLL +F++  F      TIG++F  R I +D K IKLQIWDTAGQE FR+IT +YYRGA G +LVYDIT  ++F+++ +W+ +  +HA++++  M++GNKCD+  +R VS E GE+ A ++G+ F+E S
Sbjct:    4 TYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETS 151          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RAB8B_PONAB (Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8B PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 8.304e-41
Identity = 74/148 (50.00%), Postives = 110/148 (74.32%), Query Frame = 1
Query:  184 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            +Y YLFK ++IGD+GVGK+CLL +F++  F      TIG++F  R I +D K IKLQIWDTAGQE FR+IT +YYRGA G +LVYDIT  ++F+++ +W+ +  +HA++++  M++GNKCD+  +R VS E GE+ A ++G+ F+E S
Sbjct:    4 TYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETS 151          
The following BLAST results are available for this feature:
BLAST of CK939539 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB11C_TOBAC3.727e-4153.10Ras-related protein Rab11C OS=Nicotiana tabacum GN... [more]
RAB8A_RAT4.868e-4150.68Ras-related protein Rab-8A OS=Rattus norvegicus GN... [more]
RAB8A_MOUSE4.868e-4150.68Ras-related protein Rab-8A OS=Mus musculus GN=Rab8... [more]
RAB8A_MACFA4.868e-4150.68Ras-related protein Rab-8A OS=Macaca fascicularis ... [more]
RAB8A_HUMAN4.868e-4150.68Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8... [more]
RAB8A_DICDI4.868e-4151.35Ras-related protein Rab-8A OS=Dictyostelium discoi... [more]
RAB8A_CANFA4.868e-4150.68Ras-related protein Rab-8A OS=Canis familiaris GN=... [more]
RAB8A_BOVIN4.868e-4150.68Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A ... [more]
RAB8B_RAT8.304e-4150.00Ras-related protein Rab-8B OS=Rattus norvegicus GN... [more]
RAB8B_PONAB8.304e-4150.00Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004749_B03 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IF_B03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939539 ID=CK939539; Name=CK939539; organism=Citrus sinensis; type=EST; length=628bp
GGGGAAAACTAATGAACACGCCTTAGTAGTAGTAGTAGTTAAAAATAATT
TTGTACCTCTTATTATTTTTCCAAGTTGTTTCAAATCGTTTCCTTTCTCG
TTTCCTCCTGTTCTAAATCAAAAGTGAAATCCATAAATAAATTGACTCCT
GATTGATCGGTCCTCATCAATCAAACAAACATGTCGTACGCTTACCTCTT
CAAGTACATCATCATCGGCGATACCGGAGTTGGTAAATCATGTCTTCTTC
TCCAATTCACGGATAAGCGGTTTCAGCCGGTTCACGACCTAACTATAGGA
GTTGAATTTGGGGCCAGAATGATCACCATCGATAACAAACCGATCAAACT
CCAAATCTGGGACACGGCTGGTCAAGAATCCTTCAGATCTATTACCAGGT
CTTACTATAGAGGGGCTGCTGGTGCATTACTTGTCTATGATATTACCAGG
AGGGAAACTTTTAATCACTTGGCTAGCTGGCTGGAGGATGCAAGGCAGCA
TGCAAATGCAAACATGACTATTATGCTCATTGGTAACAAGTGTGATCTTG
CTCATAGAAGGGCTGTGAGTACGGAGGAAGGTGAGCAGTTTGCAAAGGAG
CATGGATTGATCTTCATGGAAGCCTCTG
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