CK939539
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RAB8B_MOUSE (Ras-related protein Rab-8B OS=Mus musculus GN=Rab8b PE=1 SV=1) HSP 1 Score: 166.777 bits (421), Expect = 8.304e-41 Identity = 74/148 (50.00%), Postives = 110/148 (74.32%), Query Frame = 1 Query: 184 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627 +Y YLFK ++IGD+GVGK+CLL +F++ F TIG++F R I +D K IKLQIWDTAGQE FR+IT +YYRGA G +LVYDIT ++F+++ +W+ + +HA++++ M++GNKCD+ +R VS E GE+ A ++G+ F+E S Sbjct: 4 TYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETS 151
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RAB8B_HUMAN (Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8B PE=1 SV=2) HSP 1 Score: 166.777 bits (421), Expect = 8.304e-41 Identity = 74/148 (50.00%), Postives = 110/148 (74.32%), Query Frame = 1 Query: 184 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627 +Y YLFK ++IGD+GVGK+CLL +F++ F TIG++F R I +D K IKLQIWDTAGQE FR+IT +YYRGA G +LVYDIT ++F+++ +W+ + +HA++++ M++GNKCD+ +R VS E GE+ A ++G+ F+E S Sbjct: 4 TYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETS 151
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: YPT1_PHYIN (Ras-like GTP-binding protein YPT1 OS=Phytophthora infestans GN=YPT1 PE=3 SV=1) HSP 1 Score: 166.392 bits (420), Expect = 1.084e-40 Identity = 79/150 (52.67%), Postives = 108/150 (72.00%), Query Frame = 1 Query: 178 NMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627 N Y YLFK ++IGD+GVGKSCLLL+F D + + TIGV+F R I +D K IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++ WL + ++A N+ +L+GNK DL +R VST+ ++FA+ G+ F+E S Sbjct: 2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEIDRYACENVNKLLVGNKSDLTAKRVVSTDAAKEFAESLGIEFLETS 151
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RGP1_ORYSJ (Ras-related protein RGP1 OS=Oryza sativa subsp. japonica GN=RGP1 PE=2 SV=2) HSP 1 Score: 166.392 bits (420), Expect = 1.084e-40 Identity = 79/145 (54.48%), Postives = 104/145 (71.72%), Query Frame = 1 Query: 193 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627 Y+FK ++IGD+ VGKS LL +F F TIGVEF R + ID + +K QIWDTAGQE +R++T +YYRGA GA+LVYDIT+R++F+H+A WLE+ R HA+ N+ IMLIGNK DL R V TE+ ++FA+ L FME S Sbjct: 17 YVFKVVLIGDSAVGKSQLLARFARNEFNLDSKATIGVEFQTRTLHIDARTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDHVARWLEELRGHADKNIVIMLIGNKSDLGTLRVVPTEDAKEFAERENLFFMETS 161
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RB11A_TOBAC (Ras-related protein Rab11A OS=Nicotiana tabacum GN=RAB11A PE=2 SV=1) HSP 1 Score: 166.392 bits (420), Expect = 1.084e-40 Identity = 78/155 (50.32%), Postives = 108/155 (69.68%), Query Frame = 1 Query: 163 LINQTNMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627 + N+ + Y YLFK ++IGD+GVGKS +L +FT F TIGVEF R + ++ K +K QIWDTAGQE +R+IT +YYRGA GALL YDIT+R+TF+++ WL + R H ++N+ I+L GNK DL H RAVS ++ + K+ GL F+E S Sbjct: 1 MANRVDHEYDYLFKMVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLFYDITKRQTFDNVQRWLRELRDHRDSNIVIILAGNKSDLKHLRAVSEQDDQALVKKEGLSFLETS 155
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: ARA4_ARATH (Ras-related protein ARA-4 OS=Arabidopsis thaliana GN=ARA-4 PE=2 SV=1) HSP 1 Score: 166.392 bits (420), Expect = 1.084e-40 Identity = 80/145 (55.17%), Postives = 100/145 (68.97%), Query Frame = 1 Query: 193 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627 YLFK +IIGD+ VGKS LL ++ F P TIGVEF + + ID K +K QIWDTAGQE FR++T +YYRGA GAL+VYDITR TF ++ WL++ H++ + MLIGNKCDL RAVS EEG+ A+ GL FME S Sbjct: 11 YLFKIVIIGDSAVGKSNLLTRYARNEFNPNSKATIGVEFQTQSMLIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRSSTFENVGRWLDELNTHSDTTVAKMLIGNKCDLESIRAVSVEEGKSLAESEGLFFMETS 155
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RAB1A_RAT (Ras-related protein Rab-1A OS=Rattus norvegicus GN=Rab1A PE=1 SV=3) HSP 1 Score: 165.622 bits (418), Expect = 1.850e-40 Identity = 77/154 (50.00%), Postives = 109/154 (70.78%), Query Frame = 1 Query: 166 INQTNMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627 ++ N Y YLFK ++IGD+GVGKSCLLL+F D + + TIGV+F R I +D K IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++ WL++ ++A+ N+ +L+GNKCDL ++ V ++FA G+ F+E S Sbjct: 1 MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETS 154
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RAB1A_MOUSE (Ras-related protein Rab-1A OS=Mus musculus GN=Rab1A PE=1 SV=3) HSP 1 Score: 165.622 bits (418), Expect = 1.850e-40 Identity = 77/154 (50.00%), Postives = 109/154 (70.78%), Query Frame = 1 Query: 166 INQTNMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627 ++ N Y YLFK ++IGD+GVGKSCLLL+F D + + TIGV+F R I +D K IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++ WL++ ++A+ N+ +L+GNKCDL ++ V ++FA G+ F+E S Sbjct: 1 MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETS 154
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RAB1A_HUMAN (Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1A PE=1 SV=3) HSP 1 Score: 165.622 bits (418), Expect = 1.850e-40 Identity = 77/154 (50.00%), Postives = 109/154 (70.78%), Query Frame = 1 Query: 166 INQTNMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627 ++ N Y YLFK ++IGD+GVGKSCLLL+F D + + TIGV+F R I +D K IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++ WL++ ++A+ N+ +L+GNKCDL ++ V ++FA G+ F+E S Sbjct: 1 MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETS 154
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RAB1A_CANFA (Ras-related protein Rab-1A OS=Canis familiaris GN=RAB1A PE=1 SV=3) HSP 1 Score: 165.622 bits (418), Expect = 1.850e-40 Identity = 77/154 (50.00%), Postives = 109/154 (70.78%), Query Frame = 1 Query: 166 INQTNMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627 ++ N Y YLFK ++IGD+GVGKSCLLL+F D + + TIGV+F R I +D K IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++ WL++ ++A+ N+ +L+GNKCDL ++ V ++FA G+ F+E S Sbjct: 1 MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETS 154 The following BLAST results are available for this feature:
BLAST of CK939539 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CK939539 ID=CK939539; Name=CK939539; organism=Citrus sinensis; type=EST; length=628bpback to top |