CK939539

Overview
NameCK939539
Unique NameCK939539
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length628
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RAB8B_MOUSE (Ras-related protein Rab-8B OS=Mus musculus GN=Rab8b PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 8.304e-41
Identity = 74/148 (50.00%), Postives = 110/148 (74.32%), Query Frame = 1
Query:  184 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            +Y YLFK ++IGD+GVGK+CLL +F++  F      TIG++F  R I +D K IKLQIWDTAGQE FR+IT +YYRGA G +LVYDIT  ++F+++ +W+ +  +HA++++  M++GNKCD+  +R VS E GE+ A ++G+ F+E S
Sbjct:    4 TYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETS 151          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RAB8B_HUMAN (Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8B PE=1 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 8.304e-41
Identity = 74/148 (50.00%), Postives = 110/148 (74.32%), Query Frame = 1
Query:  184 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            +Y YLFK ++IGD+GVGK+CLL +F++  F      TIG++F  R I +D K IKLQIWDTAGQE FR+IT +YYRGA G +LVYDIT  ++F+++ +W+ +  +HA++++  M++GNKCD+  +R VS E GE+ A ++G+ F+E S
Sbjct:    4 TYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETS 151          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: YPT1_PHYIN (Ras-like GTP-binding protein YPT1 OS=Phytophthora infestans GN=YPT1 PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.084e-40
Identity = 79/150 (52.67%), Postives = 108/150 (72.00%), Query Frame = 1
Query:  178 NMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            N  Y YLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R I +D K IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL +  ++A  N+  +L+GNK DL  +R VST+  ++FA+  G+ F+E S
Sbjct:    2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEIDRYACENVNKLLVGNKSDLTAKRVVSTDAAKEFAESLGIEFLETS 151          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RGP1_ORYSJ (Ras-related protein RGP1 OS=Oryza sativa subsp. japonica GN=RGP1 PE=2 SV=2)

HSP 1 Score: 166.392 bits (420), Expect = 1.084e-40
Identity = 79/145 (54.48%), Postives = 104/145 (71.72%), Query Frame = 1
Query:  193 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            Y+FK ++IGD+ VGKS LL +F    F      TIGVEF  R + ID + +K QIWDTAGQE +R++T +YYRGA GA+LVYDIT+R++F+H+A WLE+ R HA+ N+ IMLIGNK DL   R V TE+ ++FA+   L FME S
Sbjct:   17 YVFKVVLIGDSAVGKSQLLARFARNEFNLDSKATIGVEFQTRTLHIDARTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDHVARWLEELRGHADKNIVIMLIGNKSDLGTLRVVPTEDAKEFAERENLFFMETS 161          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RB11A_TOBAC (Ras-related protein Rab11A OS=Nicotiana tabacum GN=RAB11A PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.084e-40
Identity = 78/155 (50.32%), Postives = 108/155 (69.68%), Query Frame = 1
Query:  163 LINQTNMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            + N+ +  Y YLFK ++IGD+GVGKS +L +FT   F      TIGVEF  R + ++ K +K QIWDTAGQE +R+IT +YYRGA GALL YDIT+R+TF+++  WL + R H ++N+ I+L GNK DL H RAVS ++ +   K+ GL F+E S
Sbjct:    1 MANRVDHEYDYLFKMVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLFYDITKRQTFDNVQRWLRELRDHRDSNIVIILAGNKSDLKHLRAVSEQDDQALVKKEGLSFLETS 155          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: ARA4_ARATH (Ras-related protein ARA-4 OS=Arabidopsis thaliana GN=ARA-4 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.084e-40
Identity = 80/145 (55.17%), Postives = 100/145 (68.97%), Query Frame = 1
Query:  193 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            YLFK +IIGD+ VGKS LL ++    F P    TIGVEF  + + ID K +K QIWDTAGQE FR++T +YYRGA GAL+VYDITR  TF ++  WL++   H++  +  MLIGNKCDL   RAVS EEG+  A+  GL FME S
Sbjct:   11 YLFKIVIIGDSAVGKSNLLTRYARNEFNPNSKATIGVEFQTQSMLIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRSSTFENVGRWLDELNTHSDTTVAKMLIGNKCDLESIRAVSVEEGKSLAESEGLFFMETS 155          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RAB1A_RAT (Ras-related protein Rab-1A OS=Rattus norvegicus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 165.622 bits (418), Expect = 1.850e-40
Identity = 77/154 (50.00%), Postives = 109/154 (70.78%), Query Frame = 1
Query:  166 INQTNMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            ++  N  Y YLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R I +D K IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL++  ++A+ N+  +L+GNKCDL  ++ V     ++FA   G+ F+E S
Sbjct:    1 MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETS 154          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RAB1A_MOUSE (Ras-related protein Rab-1A OS=Mus musculus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 165.622 bits (418), Expect = 1.850e-40
Identity = 77/154 (50.00%), Postives = 109/154 (70.78%), Query Frame = 1
Query:  166 INQTNMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            ++  N  Y YLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R I +D K IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL++  ++A+ N+  +L+GNKCDL  ++ V     ++FA   G+ F+E S
Sbjct:    1 MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETS 154          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RAB1A_HUMAN (Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1A PE=1 SV=3)

HSP 1 Score: 165.622 bits (418), Expect = 1.850e-40
Identity = 77/154 (50.00%), Postives = 109/154 (70.78%), Query Frame = 1
Query:  166 INQTNMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            ++  N  Y YLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R I +D K IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL++  ++A+ N+  +L+GNKCDL  ++ V     ++FA   G+ F+E S
Sbjct:    1 MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETS 154          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RAB1A_CANFA (Ras-related protein Rab-1A OS=Canis familiaris GN=RAB1A PE=1 SV=3)

HSP 1 Score: 165.622 bits (418), Expect = 1.850e-40
Identity = 77/154 (50.00%), Postives = 109/154 (70.78%), Query Frame = 1
Query:  166 INQTNMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            ++  N  Y YLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R I +D K IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL++  ++A+ N+  +L+GNKCDL  ++ V     ++FA   G+ F+E S
Sbjct:    1 MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETS 154          
The following BLAST results are available for this feature:
BLAST of CK939539 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB8B_MOUSE8.304e-4150.00Ras-related protein Rab-8B OS=Mus musculus GN=Rab8... [more]
RAB8B_HUMAN8.304e-4150.00Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8... [more]
YPT1_PHYIN1.084e-4052.67Ras-like GTP-binding protein YPT1 OS=Phytophthora ... [more]
RGP1_ORYSJ1.084e-4054.48Ras-related protein RGP1 OS=Oryza sativa subsp. ja... [more]
RB11A_TOBAC1.084e-4050.32Ras-related protein Rab11A OS=Nicotiana tabacum GN... [more]
ARA4_ARATH1.084e-4055.17Ras-related protein ARA-4 OS=Arabidopsis thaliana ... [more]
RAB1A_RAT1.850e-4050.00Ras-related protein Rab-1A OS=Rattus norvegicus GN... [more]
RAB1A_MOUSE1.850e-4050.00Ras-related protein Rab-1A OS=Mus musculus GN=Rab1... [more]
RAB1A_HUMAN1.850e-4050.00Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1... [more]
RAB1A_CANFA1.850e-4050.00Ras-related protein Rab-1A OS=Canis familiaris GN=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004749_B03 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IF_B03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939539 ID=CK939539; Name=CK939539; organism=Citrus sinensis; type=EST; length=628bp
GGGGAAAACTAATGAACACGCCTTAGTAGTAGTAGTAGTTAAAAATAATT
TTGTACCTCTTATTATTTTTCCAAGTTGTTTCAAATCGTTTCCTTTCTCG
TTTCCTCCTGTTCTAAATCAAAAGTGAAATCCATAAATAAATTGACTCCT
GATTGATCGGTCCTCATCAATCAAACAAACATGTCGTACGCTTACCTCTT
CAAGTACATCATCATCGGCGATACCGGAGTTGGTAAATCATGTCTTCTTC
TCCAATTCACGGATAAGCGGTTTCAGCCGGTTCACGACCTAACTATAGGA
GTTGAATTTGGGGCCAGAATGATCACCATCGATAACAAACCGATCAAACT
CCAAATCTGGGACACGGCTGGTCAAGAATCCTTCAGATCTATTACCAGGT
CTTACTATAGAGGGGCTGCTGGTGCATTACTTGTCTATGATATTACCAGG
AGGGAAACTTTTAATCACTTGGCTAGCTGGCTGGAGGATGCAAGGCAGCA
TGCAAATGCAAACATGACTATTATGCTCATTGGTAACAAGTGTGATCTTG
CTCATAGAAGGGCTGTGAGTACGGAGGAAGGTGAGCAGTTTGCAAAGGAG
CATGGATTGATCTTCATGGAAGCCTCTG
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