CK939539

Overview
NameCK939539
Unique NameCK939539
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length628
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RAB1_DISOM (Ras-related protein ORAB-1 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.416e-40
Identity = 77/150 (51.33%), Postives = 107/150 (71.33%), Query Frame = 1
Query:  178 NMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            N  Y YLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R I +D K IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL++  ++A+ N+  +L+GNKCDL  ++ V     ++FA   G+ F+E S
Sbjct:    2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETS 151          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: YPTM2_MAIZE (GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.155e-40
Identity = 79/150 (52.67%), Postives = 106/150 (70.67%), Query Frame = 1
Query:  178 NMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            N  Y YLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R +  D K IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL +  ++A+ N+  +L+GNK DL   + V+TE  + FA E G+ FME S
Sbjct:    2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKSDLTANKVVATETAKAFADEMGIPFMETS 151          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RAB8B_DICDI (Ras-related protein Rab-8B OS=Dictyostelium discoideum GN=rab8B PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.155e-40
Identity = 75/148 (50.68%), Postives = 106/148 (71.62%), Query Frame = 1
Query:  184 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            +Y +L K ++IGD+GVGKSCLLL+F+D  F P    TIG++F  R I ++ K IKLQIWDTAGQE FR+IT +YYRGA G LLVYD+T  ++F  + +W+ +  QHA+ ++  MLIGNKCD+  ++ V +  G+  A E+G+ F+E S
Sbjct:   11 AYDFLVKLLLIGDSGVGKSCLLLRFSDGSFTPSFIATIGIDFKIRTIELEGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGSIRNWIRNIEQHASDSVNKMLIGNKCDMTEKKVVDSSRGKSLADEYGIKFLETS 158          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RAB8_DISOM (Ras-related protein Rab-8 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.121e-40
Identity = 72/148 (48.65%), Postives = 109/148 (73.65%), Query Frame = 1
Query:  184 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            +Y YLFK ++IGD+GVGK+CLL +F++  F      TIG++F  R + +D K IKLQIWDTAGQE FR+IT +YYRGA G + VYDIT  ++F+++ +W+ +  +HA++++  M++GNKCD+  +R VS E GE+ A ++G+ F+E S
Sbjct:    4 TYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTVELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMKVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNEKRQVSKERGEKLAIDYGIKFLETS 151          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RBD2A_ARATH (Ras-related protein RABD2A OS=Arabidopsis thaliana GN=RABD2A PE=1 SV=3)

HSP 1 Score: 164.081 bits (414), Expect = 5.382e-40
Identity = 79/150 (52.67%), Postives = 105/150 (70.00%), Query Frame = 1
Query:  178 NMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            N  Y YLFK ++IGD+GVGKSCLLL+F+D  +   +  TIGV+F  R +  D K IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T  E+FN++  WL +  ++A+ N+  +L+GNK DL   RA+  E  + FA E G+ FME S
Sbjct:    2 NPEYDYLFKLLLIGDSGVGKSCLLLRFSDDSYVESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKSDLTENRAIPYETAKAFADEIGIPFMETS 151          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: YPT32_YEAST (GTP-binding protein YPT32/YPT11 OS=Saccharomyces cerevisiae GN=YPT32 PE=1 SV=3)

HSP 1 Score: 163.696 bits (413), Expect = 7.029e-40
Identity = 79/147 (53.74%), Postives = 105/147 (71.43%), Query Frame = 1
Query:  187 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R I ++NK IK QIWDTAGQE +R+IT +YYRGA GAL+VYDI++  ++ +   WL + R++A+ N+ + LIGNK DLAH RAV T+E + FA E+ ++F E S
Sbjct:   10 YDYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDLAHLRAVPTDEAKNFAMENQMLFTETS 156          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RABQ_DICDI (Ras-related protein RabQ OS=Dictyostelium discoideum GN=rabQ PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 9.181e-40
Identity = 81/145 (55.86%), Postives = 104/145 (71.72%), Query Frame = 1
Query:  193 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            Y  K I+ G   VGKS LLLQF +K F    D TIGVEF  R I ID+  IKL+IWDTAGQESFRSIT +YYRGA  ALL YDIT+R++F +L+ W+++ RQ ++ N+ I LIGNKCD   +R ++TEEG + AKE+ ++F E S
Sbjct:    4 YHLKCIVTGPPFVGKSSLLLQFCEKEFSFEMDTTIGVEFQTRSILIDSSKIKLEIWDTAGQESFRSITTNYYRGAHIALLCYDITKRQSFQYLSGWMDEVRQMSSPNIVIALIGNKCDCKDKRVITTEEGAKNAKENDILFFETS 148          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: YPTM1_MAIZE (GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=2 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 1.199e-39
Identity = 75/147 (51.02%), Postives = 106/147 (72.11%), Query Frame = 1
Query:  187 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            + YLFK ++IGD+ VGKSC LL+F D  +   +  TIGV+F  R + ++ K +KLQIWDTAGQE FR+IT SYYRGA G ++VYDIT  E+FN++  WL++  ++AN ++  +L+GNKCDLA  RAV T   + +A+E G+ F+E S
Sbjct:    5 FDYLFKLLLIGDSSVGKSCFLLRFADDSYVDSYISTIGVDFKIRTVEVEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDITDMESFNNVKQWLDEIDRYANDSVRKLLVGNKCDLAENRAVDTSVAQAYAQEVGIPFLETS 151          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RAB8A_PONAB (Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8A PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.199e-39
Identity = 74/148 (50.00%), Postives = 109/148 (73.65%), Query Frame = 1
Query:  184 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            +Y YLFK ++IGD+GVGK+C+L +F++  F      TIG++F  R I +D K IKLQIWDTAGQE FR+IT +YYRGA G +LVYDIT  ++F+++ +W+ +  +HA+A++  M++GNK D+  +R VS E GE+ A ++G+ FME S
Sbjct:    4 TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKRDVNDKRQVSKERGEKLALDYGIKFMETS 151          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RAB1A_PIG (Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A PE=2 SV=3)

HSP 1 Score: 162.925 bits (411), Expect = 1.199e-39
Identity = 76/154 (49.35%), Postives = 108/154 (70.13%), Query Frame = 1
Query:  166 INQTNMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            ++  N  Y YLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R I +D K IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T + +FN++  WL++  ++A+ N+  +L+GNKCDL  ++ V     ++FA   G+ F+E S
Sbjct:    1 MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQGSFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETS 154          
The following BLAST results are available for this feature:
BLAST of CK939539 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB1_DISOM2.416e-4051.33Ras-related protein ORAB-1 OS=Discopyge ommata PE=... [more]
YPTM2_MAIZE3.155e-4052.67GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=... [more]
RAB8B_DICDI3.155e-4050.68Ras-related protein Rab-8B OS=Dictyostelium discoi... [more]
RAB8_DISOM4.121e-4048.65Ras-related protein Rab-8 OS=Discopyge ommata PE=2... [more]
RBD2A_ARATH5.382e-4052.67Ras-related protein RABD2A OS=Arabidopsis thaliana... [more]
YPT32_YEAST7.029e-4053.74GTP-binding protein YPT32/YPT11 OS=Saccharomyces c... [more]
RABQ_DICDI9.181e-4055.86Ras-related protein RabQ OS=Dictyostelium discoide... [more]
YPTM1_MAIZE1.199e-3951.02GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=... [more]
RAB8A_PONAB1.199e-3950.00Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8... [more]
RAB1A_PIG1.199e-3949.35Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004749_B03 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IF_B03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939539 ID=CK939539; Name=CK939539; organism=Citrus sinensis; type=EST; length=628bp
GGGGAAAACTAATGAACACGCCTTAGTAGTAGTAGTAGTTAAAAATAATT
TTGTACCTCTTATTATTTTTCCAAGTTGTTTCAAATCGTTTCCTTTCTCG
TTTCCTCCTGTTCTAAATCAAAAGTGAAATCCATAAATAAATTGACTCCT
GATTGATCGGTCCTCATCAATCAAACAAACATGTCGTACGCTTACCTCTT
CAAGTACATCATCATCGGCGATACCGGAGTTGGTAAATCATGTCTTCTTC
TCCAATTCACGGATAAGCGGTTTCAGCCGGTTCACGACCTAACTATAGGA
GTTGAATTTGGGGCCAGAATGATCACCATCGATAACAAACCGATCAAACT
CCAAATCTGGGACACGGCTGGTCAAGAATCCTTCAGATCTATTACCAGGT
CTTACTATAGAGGGGCTGCTGGTGCATTACTTGTCTATGATATTACCAGG
AGGGAAACTTTTAATCACTTGGCTAGCTGGCTGGAGGATGCAAGGCAGCA
TGCAAATGCAAACATGACTATTATGCTCATTGGTAACAAGTGTGATCTTG
CTCATAGAAGGGCTGTGAGTACGGAGGAAGGTGAGCAGTTTGCAAAGGAG
CATGGATTGATCTTCATGGAAGCCTCTG
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