EY666020

Overview
NameEY666020
Unique NameEY666020
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length871
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY666020 vs. ExPASy Swiss-Prot
Match: RCA_ORYSJ (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2)

HSP 1 Score: 271.937 bits (694), Expect = 1.685e-76
Identity = 141/192 (73.44%), Postives = 158/192 (82.29%), Query Frame = 3
Query:  132 GAATSVPSSSFFGTSLKKVSSRIPPSKVPSAS---FKITA-EVDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFPCELVFAKMGINPIMMNAGELESGNAGEPA*VIRQK 695
            GA  S P++ F G  LKK  +        S++   FK+ A E+DE KQT +DRWKGLAYD SDDQQDITRGKG VDSLFQAP G GTH AV+SSY+Y+SQGLRTY+ DNTM G YIAPAFMDKLVVHI+KNFM+LPNIKVPLILGIWGGKGQGKSF CELVFAKMGINPIMM+AGELESGNAGEPA +IRQ+
Sbjct:   10 GAPASTPTN-FLGKKLKKQVTSAVNYHGKSSNINRFKVMAKELDEGKQTDQDRWKGLAYDISDDQQDITRGKGFVDSLFQAPTGDGTHEAVLSSYEYLSQGLRTYDFDNTMGGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQR 200          

HSP 2 Score: 29.261 bits (64), Expect = 1.685e-76
Identity = 19/45 (42.22%), Postives = 22/45 (48.89%), Query Frame = 2
Query:  722 RKGKWACLLINES*CQDWARWGGTPPKTRNTQMGYPPPLNIA*KP 856
            +KGK  CL IN+       R GGT   T N QM     +NIA  P
Sbjct:  209 KKGKMCCLFINDLDAGA-GRMGGTTQYTVNNQMVNATLMNIADNP 252          

HSP 3 Score: 28.4906 bits (62), Expect = 1.685e-76
Identity = 14/21 (66.67%), Postives = 16/21 (76.19%), Query Frame = 1
Query:  673 PLK*SGRRDREAADLIKKGKM 735
            P K   +R REAAD+IKKGKM
Sbjct:  193 PAKLIRQRYREAADIIKKGKM 213          
BLAST of EY666020 vs. ExPASy Swiss-Prot
Match: RCA_MAIZE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Zea mays GN=RCA1 PE=2 SV=3)

HSP 1 Score: 268.855 bits (686), Expect = 8.238e-76
Identity = 141/196 (71.94%), Postives = 157/196 (80.10%), Query Frame = 3
Query:  132 GAATSVPS-SSFFGTSLKK--VSSRIP---PSKVPSASFKITA--EVDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFPCELVFAKMGINPIMMNAGELESGNAGEPA*VIRQK 695
            GA  S P+ SSF G  L K  VS+ +     S   ++ FK  A  EVDE KQT +DRWKGLAYD SDDQQDITRGKG VD+LFQAPMG GTH AV+SSYDYISQG ++YN DN MDG YIA  FMDKLVVH++KNFM+LPNIKVPLILGIWGGKGQGKSF CELVFAKMGI PIMM+AGELESGNAGEPA +IRQ+
Sbjct:   10 GAPASTPTRSSFLGKKLNKPQVSAAVTYHGKSSSSNSRFKAMAAKEVDETKQTDEDRWKGLAYDISDDQQDITRGKGLVDNLFQAPMGDGTHVAVLSSYDYISQGQKSYNFDNMMDGFYIAKGFMDKLVVHLSKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGITPIMMSAGELESGNAGEPAKLIRQR 205          

HSP 2 Score: 30.4166 bits (67), Expect = 8.238e-76
Identity = 20/47 (42.55%), Postives = 24/47 (51.06%), Query Frame = 2
Query:  716 LSRKGKWACLLINES*CQDWARWGGTPPKTRNTQMGYPPPLNIA*KP 856
            L +KGK +CL IN+       R GGT   T N QM     +NIA  P
Sbjct:  212 LIKKGKMSCLFINDL-DAGAGRMGGTTQYTVNNQMVNATLMNIADNP 257          

HSP 3 Score: 28.1054 bits (61), Expect = 8.238e-76
Identity = 14/21 (66.67%), Postives = 16/21 (76.19%), Query Frame = 1
Query:  673 PLK*SGRRDREAADLIKKGKM 735
            P K   +R REA+DLIKKGKM
Sbjct:  198 PAKLIRQRYREASDLIKKGKM 218          
BLAST of EY666020 vs. ExPASy Swiss-Prot
Match: RCAA_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 7.934e-73
Identity = 134/191 (70.16%), Postives = 153/191 (80.10%), Query Frame = 3
Query:  132 GAATSVPSSSFFGTSLKK-VSSRIPPSKVPSASFKITAEVDENKQTKK--DRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFPCELVFAKMGINPIMMNAGELESGNAGEPA*VIRQK 695
            GA  S P++ F G  LKK V+S +      S + + T    EN   K+  D+WKGLAYD SDDQQDITRGKG VDSLFQAP G GTH AV+SSY+Y+SQGLR Y+ DNTM G YIAPAFMDKLVVH++KNFM+LPNIK+PLILGIWGGKGQGKSF CELVFAKMGINPIMM+AGELESGNAGEPA +IRQ+
Sbjct:   10 GAPASTPTN-FLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGHGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQR 199          

HSP 2 Score: 28.8758 bits (63), Expect = 7.934e-73
Identity = 19/45 (42.22%), Postives = 22/45 (48.89%), Query Frame = 2
Query:  722 RKGKWACLLINES*CQDWARWGGTPPKTRNTQMGYPPPLNIA*KP 856
            +KGK  CL IN+       R GGT   T N QM     +NIA  P
Sbjct:  208 KKGKMCCLFINDLDAGA-GRMGGTTQYTVNNQMVNATLMNIADAP 251          

HSP 3 Score: 28.4906 bits (62), Expect = 7.934e-73
Identity = 14/21 (66.67%), Postives = 16/21 (76.19%), Query Frame = 1
Query:  673 PLK*SGRRDREAADLIKKGKM 735
            P K   +R REAAD+IKKGKM
Sbjct:  192 PAKLIRQRYREAADMIKKGKM 212          
BLAST of EY666020 vs. ExPASy Swiss-Prot
Match: RCAB_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 1.035e-72
Identity = 136/191 (71.20%), Postives = 154/191 (80.63%), Query Frame = 3
Query:  132 GAATSVPSSSFFGTSLKKVSSRIPPSKVPSASFKITA---EVDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFPCELVFAKMGINPIMMNAGELESGNAGEPA*VIRQK 695
            GA  S P+  F G  +K        +K+ S   ++ A   E+D+ KQT  DRWKGLAYD SDDQQDITRGKG VDSLFQAPMG GTH A++SSY+YISQGLR Y+ DNTMDGLYIAPAFMDKL+VH+ KNFM+LPNIKVPLILGIWGGKGQGKSF CELVFAKMGINPIMM+AGELESGN GEPA +IRQ+
Sbjct:   10 GAPASTPTI-FLGKKVKNYYHG--GNKMKSRVVRVMAAKKELDQGKQTDADRWKGLAYDISDDQQDITRGKGIVDSLFQAPMGDGTHEAILSSYEYISQGLRKYDFDNTMDGLYIAPAFMDKLIVHLAKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN-GEPAKLIRQR 196          

HSP 2 Score: 28.1054 bits (61), Expect = 1.035e-72
Identity = 19/44 (43.18%), Postives = 21/44 (47.73%), Query Frame = 2
Query:  725 KGKWACLLINES*CQDWARWGGTPPKTRNTQMGYPPPLNIA*KP 856
            KGK  CL IN+       R GGT   T N QM     +NIA  P
Sbjct:  206 KGKMCCLFINDLDAGA-GRMGGTTQYTVNNQMVNATLMNIADAP 248          

HSP 3 Score: 26.5646 bits (57), Expect = 1.035e-72
Identity = 13/21 (61.90%), Postives = 15/21 (71.43%), Query Frame = 1
Query:  673 PLK*SGRRDREAADLIKKGKM 735
            P K   +R REAAD+I KGKM
Sbjct:  189 PAKLIRQRYREAADIINKGKM 209          
BLAST of EY666020 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 256.914 bits (655), Expect = 2.652e-70
Identity = 129/200 (64.50%), Postives = 154/200 (77.00%), Query Frame = 3
Query:   99 AAAVPLSFNGSGAATSVPSSSFFGTSLKKVSS-RIPPSKVPSASFKITAEVDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFPCELVFAKMGINPIMMNAGELESGNAGEPA*VIRQK 695
            A   PL+ NGS A  SVP+S F G+SLKK ++ R P S   S +  +T +  EN++   D+W  LA D SDDQ DI RGKG VDSLFQAP   GTH  + SS++Y SQGLR Y++DN +   YIAPAFMDKLVVHITKNF++LPNIK+PLILG+WGGKGQGKSF CELVFAK+GINPIMM+AGELESGNAGEPA +IRQ+
Sbjct:   11 ATRAPLNLNGSSAGASVPTSGFLGSSLKKHTNVRFPSS---SRTTSMTVKAAENEEKNTDKWAHLAKDFSDDQLDIRRGKGMVDSLFQAPADAGTHVPIQSSFEYESQGLRKYDIDNMLGDFYIAPAFMDKLVVHITKNFLNLPNIKIPLILGVWGGKGQGKSFQCELVFAKLGINPIMMSAGELESGNAGEPAKLIRQR 207          

HSP 2 Score: 26.9498 bits (58), Expect = 2.652e-70
Identity = 14/21 (66.67%), Postives = 15/21 (71.43%), Query Frame = 1
Query:  673 PLK*SGRRDREAADLIKKGKM 735
            P K   +R REAADLI KGKM
Sbjct:  200 PAKLIRQRYREAADLIAKGKM 220          

HSP 3 Score: 25.0238 bits (53), Expect = 2.652e-70
Identity = 19/47 (40.43%), Postives = 21/47 (44.68%), Query Frame = 2
Query:  716 LSRKGKWACLLINES*CQDWARWGGTPPKTRNTQMGYPPPLNIA*KP 856
            L  KGK   L IN+       R GGT   T N QM     +NIA  P
Sbjct:  214 LIAKGKMCALFINDLE-PGAGRMGGTTQYTVNNQMVNATLMNIADNP 259          
BLAST of EY666020 vs. ExPASy Swiss-Prot
Match: RCA_CHLRE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.517e-45
Identity = 93/171 (54.39%), Postives = 118/171 (69.01%), Query Frame = 3
Query:  192 SRIPPSKVPSASFKITAEVDENKQTKKDRWKGL--AYDESDDQQDITRGKGAVDSLFQAPMGTG-THYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFPCELVFAKMGINPIMMNAGELESGNAGEPA*VIRQK 695
            +R+    V  A  ++ A      + +  RW+ +    D SDDQQDITRG+  VD LFQ   G G TH AV+SS +Y+SQ   ++N  N  DG YI+PAF+DK+ +HI KNFM LP IKVPLILGIWGGKGQGK+F C L + K+GI PI+M+AGELESGNAGEPA +IR +
Sbjct:   18 ARVATRSVRRAQLQVVAP----SRKQMGRWRSIDAGVDASDDQQDITRGREMVDDLFQGGFGAGGTHNAVLSSQEYLSQSRASFN--NIEDGFYISPAFLDKMTIHIAKNFMDLPKIKVPLILGIWGGKGQGKTFQCALAYKKLGIAPIVMSAGELESGNAGEPAKLIRTR 182          

HSP 2 Score: 25.409 bits (54), Expect = 1.517e-45
Identity = 12/21 (57.14%), Postives = 15/21 (71.43%), Query Frame = 1
Query:  673 PLK*SGRRDREAADLIKKGKM 735
            P K    R REA+D+IKKG+M
Sbjct:  175 PAKLIRTRYREASDIIKKGRM 195          
BLAST of EY666020 vs. ExPASy Swiss-Prot
Match: RCA_ARAHY (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic (Fragments) OS=Arachis hypogaea GN=RCA PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.940e-26
Identity = 73/131 (55.73%), Postives = 75/131 (57.25%), Query Frame = 3
Query:  285 GLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFPCELVFAKMGINPIMMNAGELESGNAGEPA 677
            GLAYD SDDQQDITRG   VDSLFQAPM  GTHYAVMSSY+YISQGLR                                    VPLILGIWGG              KMGINPIMM+AGELESGNAGEPA
Sbjct:    1 GLAYDISDDQQDITRGM--VDSLFQAPMNDGTHYAVMSSYEYISQGLR------------------------------------VPLILGIWGG--------------KMGINPIMMSAGELESGNAGEPA 79          
BLAST of EY666020 vs. ExPASy Swiss-Prot
Match: RCA_ANASC (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain CA / ATCC 33047) GN=rca PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.204e-22
Identity = 48/76 (63.16%), Postives = 62/76 (81.58%), Query Frame = 3
Query:  462 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFPCELVFAKMGINPIMMNAGELESGNAGEPA*VIR 689
            YIAP F+DKL VHITKNF++LP ++VPLILGI G KG+GK+F CEL F KMG+   +++ GELES +AG+PA +IR
Sbjct:    4 YIAPRFLDKLAVHITKNFLNLPGVRVPLILGIHGRKGEGKTFQCELAFEKMGVEVTLISGGELESPDAGDPARLIR 79          
BLAST of EY666020 vs. ExPASy Swiss-Prot
Match: RCA_ANASP (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain PCC 7120) GN=rca PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.796e-22
Identity = 48/76 (63.16%), Postives = 62/76 (81.58%), Query Frame = 3
Query:  462 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFPCELVFAKMGINPIMMNAGELESGNAGEPA*VIR 689
            YIAP F+DKL VHITKNF+++P ++VPLILGI G KG+GK+F CEL F KMGI   +++ GELES +AG+PA +IR
Sbjct:    4 YIAPRFLDKLAVHITKNFLNIPGVRVPLILGIHGRKGEGKTFQCELAFEKMGIEVTLISGGELESPDAGDPARLIR 79          
The following BLAST results are available for this feature:
BLAST of EY666020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
RCA_ORYSJ1.685e-7673.44Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MAIZE8.238e-7671.94Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAA_HORVU7.934e-7370.16Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAB_HORVU1.035e-7271.20Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SPIOL2.652e-7064.50Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CHLRE1.517e-4554.39Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARAHY5.940e-2655.73Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASC5.204e-2263.16Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASP6.796e-2263.16Ribulose bisphosphate carboxylase/oxygenase activa... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-102-011-H02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY666020 ID=EY666020; Name=EY666020; organism=Citrus sinensis; type=EST; length=871bp
CACGCACCCAGCGCATTGCTTCGCTTTCCTTTGCCTGCATTGCAGCGTGA
CCCTTTAGCTACTTCAATCACAGCCGTCCAATTCTCGCTAGCCTAATGGC
TGCTGCTGTACCGTTGAGCTTCAATGGCTCTGGTGCTGCAACCTCTGTCC
CAAGCTCATCTTTCTTTGGCACCAGCTTGAAGAAGGTAAGCTCAAGGATC
CCCCCATCCAAGGTCCCTTCTGCGAGCTTCAAGATTACTGCTGAAGTCGA
TGAGAACAAGCAGACCAAGAAGGACAGATGGAAGGGCCTTGCCTACGACG
AATCTGATGACCAGCAAGACATCACCAGAGGAAAAGGTGCTGTGGACTCT
CTGTTCCAAGCCCCCATGGGAACCGGAACTCACTATGCTGTCATGAGTTC
TTATGACTACATCAGCCAAGGTCTCCGCACATACAACTTGGACAACACGA
TGGACGGTCTCTACATTGCCCCTGCTTTCATGGACAAGCTTGTTGTTCAC
ATCACCAAGAACTTCATGTCCCTGCCCAACATCAAGGTTCCTCTCATCTT
GGGTATATGGGGAGGCAAAGGGCAAGGAAAATCATTCCCATGTGAGCTTG
TTTTCGCCAAGATGGGCATCAACCCCATTATGATGAATGCCGGAGAATTG
GAAAGTGGCAATGCTGGAGAACCCGCTTAAGTGATCAGGCAGAAGGGACC
GTGAGGCAGCTGACCTTATCAAGAAAGGGAAAATGGGCCTGCCTCCTGAT
CAATGAATCTTGATGCCAGGACTGGGCCCGATGGGGGGGCACCCCCCCAA
AAACACGTAACACACAAATGGGTTACCCCCCCCCCCTGAACATTGCCTGA
AAACCCAACTTGGGGCCCAAC
back to top