CK939527

Overview
NameCK939527
Unique NameCK939527
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length671
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_SYNS3 (Ribosome-recycling factor OS=Synechococcus sp. (strain CC9311) GN=frr PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.228e-32
Identity = 61/112 (54.46%), Postives = 88/112 (78.57%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666
            D++A M ++++  + NFN++RTGR+NP++LD+I VEYYG+   LKS+A ++TPDS ++ +QP+D  SL  IEKAI +SDLG TPNNDG++IR+ +P LT ERRKE  K+ AK
Sbjct:    5 DLEANMRKSVEATQRNFNTIRTGRANPSLLDRINVEYYGADTPLKSLASLSTPDSQTIAVQPFDMGSLALIEKAIATSDLGFTPNNDGKIIRINVPPLTEERRKEFCKLAAK 116          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_PROMT (Ribosome-recycling factor OS=Prochlorococcus marinus (strain NATL2A) GN=frr PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.357e-31
Identity = 62/112 (55.36%), Postives = 86/112 (76.79%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666
            ++K  M ++I+  + NFN++RTGR+N ++LD+I VEYYG+   LKS+A I TPDS ++ IQP+D  SL SIEKAI +SDLG TPNNDG++IR+ +P LT ERRKE  K+ +K
Sbjct:    5 ELKTTMSKSIEAAQRNFNTIRTGRANTSLLDRISVEYYGAETPLKSLATITTPDSQTIAIQPFDLGSLASIEKAIATSDLGFTPNNDGKIIRINVPPLTEERRKEFCKLASK 116          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_NOSP7 (Ribosome-recycling factor OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=frr PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.357e-31
Identity = 61/112 (54.46%), Postives = 90/112 (80.36%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666
            D K++M+ +++  +  FN++RTGR+N ++LDK+ V+YYGSP  LKS+A I+TPD+S++LIQPY++++L  IEKAI  SD+G+TP+NDG VIRL +P LTS+RRKE  K+  K
Sbjct:    5 DAKSKMQSSVESTQRAFNTIRTGRANASLLDKVLVDYYGSPTPLKSLANISTPDASTILIQPYERNTLNIIEKAISLSDVGLTPSNDGSVIRLNIPPLTSDRRKEFVKMATK 116          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_TRIEI (Ribosome-recycling factor OS=Trichodesmium erythraeum (strain IMS101) GN=frr PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.773e-31
Identity = 62/112 (55.36%), Postives = 88/112 (78.57%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666
            + + +M++ I+  + +FN+VRTGR+N ++LD++ VEYYGSP  LKS+A I  PD+S++ IQPYDK+SL  IEKAI  SD+G+TPNNDG +IRL +P LT+ERR+E+ K  AK
Sbjct:    5 EAEEKMQKAIEATKNSFNTVRTGRANASLLDRVMVEYYGSPTQLKSMANIGIPDASTITIQPYDKTSLGLIEKAINMSDVGLTPNNDGSIIRLNIPALTAERRQEMVKKTAK 116          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_SYNY3 (Ribosome-recycling factor OS=Synechocystis sp. (strain PCC 6803) GN=frr PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.773e-31
Identity = 62/112 (55.36%), Postives = 90/112 (80.36%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666
            ++K  M+++++  + +FN++RTGR+N ++LD+I VEYYG+   LKS+A I TPD+S+++IQP+D  S+ +IEKAI  SDLG+TPNNDG+VIRL +P LT+ERRKEL KV  K
Sbjct:    5 ELKDHMQKSVEATQRSFNTIRTGRANASLLDRITVEYYGAETPLKSLATIGTPDASTIVIQPFDMGSIGTIEKAISLSDLGLTPNNDGKVIRLNIPPLTAERRKELVKVAGK 116          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_CYAP4 (Ribosome-recycling factor OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=frr PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.773e-31
Identity = 62/112 (55.36%), Postives = 89/112 (79.46%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666
            DV+  M+++++  +  FN++RTGR+N ++LD++ VEYYG+   L+S+A I+TPDSS++ IQP+D++SL  IEKAI  SDLG+TPNNDG VIRL +P LTS+RRKEL K  +K
Sbjct:    5 DVEDHMQKSVEATQRAFNTIRTGRANTSLLDRVTVEYYGAETPLRSLANISTPDSSTIAIQPFDRNSLNLIEKAISMSDLGLTPNNDGTVIRLNIPPLTSDRRKELVKTASK 116          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_PROM1 (Ribosome-recycling factor OS=Prochlorococcus marinus (strain NATL1A) GN=frr PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.024e-31
Identity = 61/112 (54.46%), Postives = 86/112 (76.79%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666
            ++K  M ++++  + NFN++RTGR+N ++LD+I VEYYG+   LKS+A I TPDS ++ IQP+D  SL SIEKAI +SDLG TPNNDG++IR+ +P LT ERRKE  K+ +K
Sbjct:    5 ELKNTMSKSVEAAQRNFNTIRTGRANTSLLDRISVEYYGAETPLKSLATITTPDSQTIAIQPFDLGSLASIEKAIATSDLGFTPNNDGKIIRINVPPLTEERRKEFCKLASK 116          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_CYAP7 (Ribosome-recycling factor OS=Cyanothece sp. (strain PCC 7424) GN=frr PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.949e-31
Identity = 60/112 (53.57%), Postives = 89/112 (79.46%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666
            +V+  M++TI+  + +FN++RTGR+N A+LD++ V+YYG+   LKS+A I TPD++++ IQPYD+ S+  IEKAI  SD+G+TPNNDG++IRL +P LT+ERRKEL K+  K
Sbjct:    5 EVQDNMQKTIESTQRSFNTIRTGRANSALLDRVMVDYYGTETPLKSLANITTPDATTIAIQPYDRGSMGQIEKAIQLSDIGLTPNNDGQMIRLNIPPLTTERRKELVKLAGK 116          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_SYNSC (Ribosome-recycling factor OS=Synechococcus sp. (strain CC9605) GN=frr PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.157e-31
Identity = 60/112 (53.57%), Postives = 88/112 (78.57%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666
            D++A M ++++  + NFN++RTGR+N ++LD+I VEYYG+   LKS+A ++TPDS ++ IQP+D S+L SIEKAI  S+LG TPNNDG++IR+ +P LT ERRKE  K+ +K
Sbjct:    5 DLEASMRKSVEATQRNFNTIRTGRANSSLLDRISVEYYGAETPLKSLATLSTPDSQTIQIQPFDISALASIEKAIAMSELGFTPNNDGKIIRINVPPLTEERRKEFCKLASK 116          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_SYNPX (Ribosome-recycling factor OS=Synechococcus sp. (strain WH8102) GN=frr PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.157e-31
Identity = 60/112 (53.57%), Postives = 88/112 (78.57%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666
            D++A M ++++  + NFN++RTGR+N ++LD+I VEYYG+   LKS+A ++TPDS ++ IQP+D S+L SIEKAI  S+LG TPNNDG++IR+ +P LT ERRKE  K+ +K
Sbjct:    5 DLEASMRKSVEATQRNFNTIRTGRANSSLLDRISVEYYGAETPLKSLATLSTPDSQTIQIQPFDISALASIEKAIAMSELGFTPNNDGKIIRINVPPLTEERRKEFCKLASK 116          
The following BLAST results are available for this feature:
BLAST of CK939527 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_SYNS31.228e-3254.46Ribosome-recycling factor OS=Synechococcus sp. (st... [more]
RRF_PROMT1.357e-3155.36Ribosome-recycling factor OS=Prochlorococcus marin... [more]
RRF_NOSP71.357e-3154.46Ribosome-recycling factor OS=Nostoc punctiforme (s... [more]
RRF_TRIEI1.773e-3155.36Ribosome-recycling factor OS=Trichodesmium erythra... [more]
RRF_SYNY31.773e-3155.36Ribosome-recycling factor OS=Synechocystis sp. (st... [more]
RRF_CYAP41.773e-3155.36Ribosome-recycling factor OS=Cyanothece sp. (strai... [more]
RRF_PROM13.024e-3154.46Ribosome-recycling factor OS=Prochlorococcus marin... [more]
RRF_CYAP73.949e-3153.57Ribosome-recycling factor OS=Cyanothece sp. (strai... [more]
RRF_SYNSC5.157e-3153.57Ribosome-recycling factor OS=Synechococcus sp. (st... [more]
RRF_SYNPX5.157e-3153.57Ribosome-recycling factor OS=Synechococcus sp. (st... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004749_D04 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IF_D04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939527 ID=CK939527; Name=CK939527; organism=Citrus sinensis; type=EST; length=671bp
GCGGGGAACTANNNTCTTAAGTCTGAGCGAGCGTTCATGGCCACGCACTT
TTCTTCAACAGGGCCCATGCGGTCCATTTTCCAACTGAAATCAAATCCTC
CCAAATGCCTCCTTTTCCTCCCTGATTCTTGTCATAGAAGAGCCGAAACT
GCCACGTGCCGTGCTAGCAGCGTTAGTGTGCGCCAGTGGAGCTCAGCTGC
AAACTACTCTAGACTTGTGAAATTATCCAACAAACCTATCGTTGTAAGAC
AACTGGCACACAAGAGAAATGGAGTTGTGAGGTGTGCAACTATTGAAGAA
ATTGAAGCGGAAAAATCTTCCATTGAGAAGGATGTTAAAGCTAGGATGGA
AAGGACTATCGATATGGTCCGAACCAATTTCAATTCCGTGAGGACAGGAA
GATCGAATCCAGCTATGCTAGATAAGATTGAGGTGGAATACTATGGAAGC
CCAGTAAGTTTGAAGAGCATAGCTCAAATCAATACCCCTGATTCAAGTTC
TCTATTGATTCAACCATATGACAAATCCAGCTTAAAGTCTATAGAGAAGG
CCATAGTAAGCTCTGATCTTGGCATGACCCCAAACAATGATGGTGAAGTC
ATACGGTTAACCCTTCCTCAATTGACATCCGAAAGGAGGAAGGAACTGTC
AAAGGTTGTGGCCAAACAGGC
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