CK939527

Overview
NameCK939527
Unique NameCK939527
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length671
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_STRS7 (Ribosome-recycling factor OS=Streptococcus equi subsp. zooepidemicus (strain H70) GN=frr PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.453e-25
Identity = 55/110 (50.00%), Postives = 78/110 (70.91%), Query Frame = 1
Query:  337 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666
            K R  ++   +   + S+R GR+N ++LD+I+V+YYG+P  L  +A I  P++  LLI P+DKSS+K IE+A+ +SDLG+TP NDG VIRL +P LT E RKEL+K V K
Sbjct:   10 KERFTQSHHSLAREYASIRAGRANASLLDRIQVDYYGAPTPLNQLASITVPEARVLLISPFDKSSIKDIERALNASDLGITPANDGSVIRLVIPALTEETRKELAKEVKK 119          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_STREM (Ribosome-recycling factor OS=Streptococcus equi subsp. zooepidemicus (strain MGCS10565) GN=frr PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.453e-25
Identity = 55/110 (50.00%), Postives = 78/110 (70.91%), Query Frame = 1
Query:  337 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666
            K R  ++   +   + S+R GR+N ++LD+I+V+YYG+P  L  +A I  P++  LLI P+DKSS+K IE+A+ +SDLG+TP NDG VIRL +P LT E RKEL+K V K
Sbjct:   10 KERFTQSHHSLAREYASIRAGRANASLLDRIQVDYYGAPTPLNQLASITVPEARVLLISPFDKSSIKDIERALNASDLGITPANDGSVIRLVIPALTEETRKELAKEVKK 119          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_STRE4 (Ribosome-recycling factor OS=Streptococcus equi subsp. equi (strain 4047) GN=frr PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.453e-25
Identity = 55/110 (50.00%), Postives = 78/110 (70.91%), Query Frame = 1
Query:  337 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666
            K R  ++   +   + S+R GR+N ++LD+I+V+YYG+P  L  +A I  P++  LLI P+DKSS+K IE+A+ +SDLG+TP NDG VIRL +P LT E RKEL+K V K
Sbjct:   10 KERFTQSHHSLAREYASIRAGRANASLLDRIQVDYYGAPTPLNQLASITVPEARVLLISPFDKSSIKDIERALNASDLGITPANDGSVIRLVIPALTEETRKELAKEVKK 119          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_STAHJ (Ribosome-recycling factor OS=Staphylococcus haemolyticus (strain JCSC1435) GN=frr PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.453e-25
Identity = 55/112 (49.11%), Postives = 79/112 (70.54%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666
            D KARM ++ID +     ++  GR+N  +L  + V+YYG+P  ++ +A IN P++  L+I PYDKSS+  IEKAI +++LG+ P +DGEVIR+T+P LT ERRKEL K V K
Sbjct:    7 DTKARMSKSIDNLSRELANISAGRANSNLLSGVTVDYYGAPTPVQQLASINVPEARLLVISPYDKSSVADIEKAIYAANLGVNPTSDGEVIRITVPALTEERRKELVKNVKK 118          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_LACCB (Ribosome-recycling factor OS=Lactobacillus casei (strain BL23) GN=frr PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.453e-25
Identity = 55/110 (50.00%), Postives = 78/110 (70.91%), Query Frame = 1
Query:  337 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666
            K  M +T + ++    ++R GR+N ++L++I VEYYG+P  L  +A I  P+   L + PYDKSSLK+IE A+ +SDLG+ P NDG+VIRL +PQLT ERRKE++K V K
Sbjct:   10 KVNMGKTEESLQRELGNIRAGRANASLLNQITVEYYGAPTPLNQMAAITIPEPRVLQVSPYDKSSLKNIETALNASDLGINPANDGDVIRLVIPQLTGERRKEIAKEVGK 119          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_LACC3 (Ribosome-recycling factor OS=Lactobacillus casei (strain ATCC 334) GN=frr PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.453e-25
Identity = 55/110 (50.00%), Postives = 78/110 (70.91%), Query Frame = 1
Query:  337 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666
            K  M +T + ++    ++R GR+N ++L++I VEYYG+P  L  +A I  P+   L + PYDKSSLK+IE A+ +SDLG+ P NDG+VIRL +PQLT ERRKE++K V K
Sbjct:   10 KVNMGKTEESLQRELGNIRAGRANASLLNQITVEYYGAPTPLNQMAAITIPEPRVLQVSPYDKSSLKNIETALNASDLGINPANDGDVIRLVIPQLTGERRKEIAKEVGK 119          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_GEOMG (Ribosome-recycling factor OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=frr PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.898e-25
Identity = 52/112 (46.43%), Postives = 80/112 (71.43%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666
            D+KA ME+++D +R  +  VRTGR+   +LD I+VEYYG+P  L  +A ++ P+  ++ IQP++   +  IEKAI++++LG TP NDG+ IR++LP LT ERRKE+ K + K
Sbjct:    8 DMKAHMEKSVDALRREYQKVRTGRATTGLLDDIKVEYYGNPSPLSQVATLSVPEPRTITIQPWEAKLIPVIEKAIMNANLGFTPANDGKTIRISLPPLTEERRKEIVKTLKK 119          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_ACIC1 (Ribosome-recycling factor OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=frr PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.898e-25
Identity = 52/109 (47.71%), Postives = 76/109 (69.72%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKV 657
            + + +ME+  ++ R NF ++RTGR+NPA+  KI VEYYG+P  L  +A     D+  ++I PYDK SL++IEKAI  SDLG+ P +DG VIR+ +P LT ERR++  K+
Sbjct:    8 EAEEKMEKATNVARENFAAIRTGRANPALFSKITVEYYGTPTPLNQLASFTVADARLIVIHPYDKGSLRAIEKAIRDSDLGVNPTDDGSVIRVAIPPLTEERRRDYIKM 116          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_LEUCK (Ribosome-recycling factor OS=Leuconostoc citreum (strain KM20) GN=frr PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.479e-25
Identity = 53/110 (48.18%), Postives = 80/110 (72.73%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660
            D K+RM+   D ++    S+RTGR+NP +LD+IEVEYYG+   L  +A I+ P++  LLI P+DK++L+ I +AI  SDLG+ P++DG ++RL +PQ+T E RK+L+K V
Sbjct:    7 DAKSRMQGAQDALQRELTSIRTGRANPHILDRIEVEYYGAMTPLNQVASISVPEARVLLITPFDKTALEEIIRAINMSDLGLNPSSDGNIVRLMIPQMTEEGRKDLAKQV 116          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_FUSNN (Ribosome-recycling factor OS=Fusobacterium nucleatum subsp. nucleatum GN=frr PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.479e-25
Identity = 53/113 (46.90%), Postives = 82/113 (72.57%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669
            + + +M +TI+ V+  F ++R GR+N +MLD I+VE YGS V L  I  ++ P++  L+I P+DK+ +  IEKAI+++++GMTPNNDG VIRL LP+LT++RRKE  K+   +
Sbjct:   11 ECEEKMVKTIEAVKEKFTAIRAGRANVSMLDGIKVENYGSEVPLNQIGTVSAPEARLLVIDPWDKTLISKIEKAILAANIGMTPNNDGRVIRLVLPELTADRRKEYVKLAKNE 123          
The following BLAST results are available for this feature:
BLAST of CK939527 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_STRS71.453e-2550.00Ribosome-recycling factor OS=Streptococcus equi su... [more]
RRF_STREM1.453e-2550.00Ribosome-recycling factor OS=Streptococcus equi su... [more]
RRF_STRE41.453e-2550.00Ribosome-recycling factor OS=Streptococcus equi su... [more]
RRF_STAHJ1.453e-2549.11Ribosome-recycling factor OS=Staphylococcus haemol... [more]
RRF_LACCB1.453e-2550.00Ribosome-recycling factor OS=Lactobacillus casei (... [more]
RRF_LACC31.453e-2550.00Ribosome-recycling factor OS=Lactobacillus casei (... [more]
RRF_GEOMG1.898e-2546.43Ribosome-recycling factor OS=Geobacter metalliredu... [more]
RRF_ACIC11.898e-2547.71Ribosome-recycling factor OS=Acidothermus cellulol... [more]
RRF_LEUCK2.479e-2548.18Ribosome-recycling factor OS=Leuconostoc citreum (... [more]
RRF_FUSNN2.479e-2546.90Ribosome-recycling factor OS=Fusobacterium nucleat... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004749_D04 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IF_D04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939527 ID=CK939527; Name=CK939527; organism=Citrus sinensis; type=EST; length=671bp
GCGGGGAACTANNNTCTTAAGTCTGAGCGAGCGTTCATGGCCACGCACTT
TTCTTCAACAGGGCCCATGCGGTCCATTTTCCAACTGAAATCAAATCCTC
CCAAATGCCTCCTTTTCCTCCCTGATTCTTGTCATAGAAGAGCCGAAACT
GCCACGTGCCGTGCTAGCAGCGTTAGTGTGCGCCAGTGGAGCTCAGCTGC
AAACTACTCTAGACTTGTGAAATTATCCAACAAACCTATCGTTGTAAGAC
AACTGGCACACAAGAGAAATGGAGTTGTGAGGTGTGCAACTATTGAAGAA
ATTGAAGCGGAAAAATCTTCCATTGAGAAGGATGTTAAAGCTAGGATGGA
AAGGACTATCGATATGGTCCGAACCAATTTCAATTCCGTGAGGACAGGAA
GATCGAATCCAGCTATGCTAGATAAGATTGAGGTGGAATACTATGGAAGC
CCAGTAAGTTTGAAGAGCATAGCTCAAATCAATACCCCTGATTCAAGTTC
TCTATTGATTCAACCATATGACAAATCCAGCTTAAAGTCTATAGAGAAGG
CCATAGTAAGCTCTGATCTTGGCATGACCCCAAACAATGATGGTGAAGTC
ATACGGTTAACCCTTCCTCAATTGACATCCGAAAGGAGGAAGGAACTGTC
AAAGGTTGTGGCCAAACAGGC
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