CK939527
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_PROMM (Ribosome-recycling factor OS=Prochlorococcus marinus (strain MIT 9313) GN=frr PE=3 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 6.736e-31 Identity = 59/112 (52.68%), Postives = 87/112 (77.68%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666 ++K M ++++ + NF ++RTGR+NP++LD+I VEYYG+ LKS+A I+TPDS ++ IQP+D S+ IEKAI +SDLG+TPNNDG++IR+ +P LT ERRKE K+ A+ Sbjct: 5 ELKDNMHKSVEATQRNFATIRTGRANPSLLDRINVEYYGTETPLKSLATISTPDSQTIAIQPFDNGSMGLIEKAIATSDLGLTPNNDGKIIRINVPPLTEERRKEFCKLAAR 116
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_CYAA5 (Ribosome-recycling factor OS=Cyanothece sp. (strain ATCC 51142) GN=frr PE=3 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 8.797e-31 Identity = 58/112 (51.79%), Postives = 89/112 (79.46%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666 D+K M+++++ + +FN++RTGR+N ++LD++ VEYYG+ L +A I+TPD+++++IQPYDK S+ IEKAI SD+G+TPNNDG+VIRL +P LT ERRK+L K+ +K Sbjct: 5 DLKENMQKSVEATQRSFNTIRTGRANASILDRVTVEYYGTETPLYQLANISTPDATTIMIQPYDKGSMGQIEKAIQMSDVGLTPNNDGQVIRLNIPPLTEERRKDLVKLASK 116
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_SYNS9 (Ribosome-recycling factor OS=Synechococcus sp. (strain CC9902) GN=frr PE=3 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 1.501e-30 Identity = 60/112 (53.57%), Postives = 87/112 (77.68%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666 D++A M ++++ + NFN++RTGR+N ++LD+I VEYYG+ LKS+A ++TPDS ++ IQP+D S L +IEKAI S+LG TPNNDG+VIR+ +P LT ERRKE K+ +K Sbjct: 5 DLEASMRKSLEATQRNFNTIRTGRANSSLLDRISVEYYGADTPLKSLATLSTPDSQTIQIQPFDISGLAAIEKAIAMSELGFTPNNDGKVIRINVPPLTEERRKEFCKMASK 116
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_SYNWW (Ribosome-recycling factor OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=frr PE=3 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 3.343e-30 Identity = 62/113 (54.87%), Postives = 86/113 (76.11%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669 D + RM++TI+ +R + S+R GR+NPAML+KI V+YYG P + +A I P++ L+IQP+DK+ + SIEKAI+ SDLG+ P+NDG VIRL +PQLT ERRKEL KV+ K+ Sbjct: 8 DTEERMKKTIEHLRKDLASLRAGRANPAMLEKIMVDYYGQPTPINQLANITVPEARLLVIQPWDKTIIASIEKAIMKSDLGINPSNDGNVIRLVIPQLTEERRKELVKVLRKR 120
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_SYNPW (Ribosome-recycling factor OS=Synechococcus sp. (strain WH7803) GN=frr PE=3 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 4.366e-30 Identity = 59/112 (52.68%), Postives = 87/112 (77.68%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666 D+++ M ++++ + NFN++RTGR+N ++LD+I VEYYG+ LKS+A ++TPDS ++ IQP+D S+L IEKAI S+LG TPNNDG+VIR+ +P LT ERRKE K+ +K Sbjct: 5 DLESSMRKSVEATQRNFNTIRTGRANSSLLDRISVEYYGAETPLKSLATLSTPDSQTIQIQPFDISALALIEKAIAMSELGFTPNNDGKVIRINVPPLTEERRKEFCKLASK 116
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_MICAN (Ribosome-recycling factor OS=Microcystis aeruginosa (strain NIES-843) GN=frr PE=3 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 4.366e-30 Identity = 59/112 (52.68%), Postives = 91/112 (81.25%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666 +V+ +M++T++ + FN++RTGR+N ++LD+I VEYYG LKS+A I+TPD++++ IQP+D++S+ +IEKAI SD+G+TP+NDG+ IRL +P LTS+RRKEL K+ AK Sbjct: 5 EVQDQMQKTVESTQRAFNTIRTGRANASLLDRIVVEYYGMETPLKSLATISTPDATTIAIQPFDRTSMGAIEKAISLSDVGLTPSNDGQTIRLNIPPLTSDRRKELVKLAAK 116
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_ALKOO (Ribosome-recycling factor OS=Alkaliphilus oremlandii (strain OhILAs) GN=frr PE=3 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 4.366e-30 Identity = 62/112 (55.36%), Postives = 85/112 (75.89%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666 +++ +M +TI+ ++ S+R GR+NPAMLD+I VEYYGSP +K IA I P+ + IQPYD S+L SIEKAI+ SDLG+ P+NDG++IR+ +PQLT ERRKEL+KV K Sbjct: 8 NLEEKMNKTINALKDELASIRAGRANPAMLDRIVVEYYGSPTPIKQIAAITAPEPRIISIQPYDGSALSSIEKAILQSDLGVNPSNDGKLIRIIVPQLTEERRKELTKVAKK 119
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_SYNP2 (Ribosome-recycling factor OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=frr PE=3 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 5.702e-30 Identity = 59/112 (52.68%), Postives = 87/112 (77.68%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666 +++ M++TI+ + +FN++RTGR++ ++LD+I VEYYG+ LKS+A I+TPDSS+++IQP+D+ SL +E+AI SDLG+TPNNDG IRL +P LT ERR+EL K K Sbjct: 5 ELRENMQKTIEATQRSFNTLRTGRASASLLDRITVEYYGAETPLKSLASISTPDSSTIMIQPFDRGSLSDVERAISMSDLGLTPNNDGTNIRLNIPPLTKERRQELVKTAGK 116
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_PROMP (Ribosome-recycling factor OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=frr PE=3 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 5.702e-30 Identity = 59/112 (52.68%), Postives = 89/112 (79.46%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666 ++++ M ++++ + NFN++RTGR+N ++LD+I VEYYG+ +KS+A I+T DS ++ IQP+D SSL++IEKAI SDLG+TPNNDG+VIR+ +P LT ERRKE K+ +K Sbjct: 5 EIQSSMNKSVEATQRNFNTIRTGRANASLLDRISVEYYGAETPIKSLASISTIDSQTISIQPFDISSLQTIEKAISVSDLGITPNNDGKVIRINVPPLTEERRKEFCKLASK 116
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_PROMA (Ribosome-recycling factor OS=Prochlorococcus marinus GN=frr PE=3 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 7.447e-30 Identity = 59/112 (52.68%), Postives = 86/112 (76.79%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666 +V+ M+++++ + NFN++RTGR+N ++LD++ VEYYG+ LKS+A I+TPDS +L IQP+D SL IEKAI SDLG TPNNDG++IR+ +P LT ERRK+ K+ +K Sbjct: 5 EVELNMQKSVEACQRNFNTIRTGRANTSLLDRLTVEYYGADTPLKSLATISTPDSQTLAIQPFDLGSLGLIEKAISISDLGFTPNNDGKIIRINIPPLTEERRKQFCKLASK 116 The following BLAST results are available for this feature:
BLAST of CK939527 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CK939527 ID=CK939527; Name=CK939527; organism=Citrus sinensis; type=EST; length=671bpback to top |