CK939527

Overview
NameCK939527
Unique NameCK939527
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length671
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_PROMM (Ribosome-recycling factor OS=Prochlorococcus marinus (strain MIT 9313) GN=frr PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.736e-31
Identity = 59/112 (52.68%), Postives = 87/112 (77.68%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666
            ++K  M ++++  + NF ++RTGR+NP++LD+I VEYYG+   LKS+A I+TPDS ++ IQP+D  S+  IEKAI +SDLG+TPNNDG++IR+ +P LT ERRKE  K+ A+
Sbjct:    5 ELKDNMHKSVEATQRNFATIRTGRANPSLLDRINVEYYGTETPLKSLATISTPDSQTIAIQPFDNGSMGLIEKAIATSDLGLTPNNDGKIIRINVPPLTEERRKEFCKLAAR 116          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_CYAA5 (Ribosome-recycling factor OS=Cyanothece sp. (strain ATCC 51142) GN=frr PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 8.797e-31
Identity = 58/112 (51.79%), Postives = 89/112 (79.46%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666
            D+K  M+++++  + +FN++RTGR+N ++LD++ VEYYG+   L  +A I+TPD+++++IQPYDK S+  IEKAI  SD+G+TPNNDG+VIRL +P LT ERRK+L K+ +K
Sbjct:    5 DLKENMQKSVEATQRSFNTIRTGRANASILDRVTVEYYGTETPLYQLANISTPDATTIMIQPYDKGSMGQIEKAIQMSDVGLTPNNDGQVIRLNIPPLTEERRKDLVKLASK 116          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_SYNS9 (Ribosome-recycling factor OS=Synechococcus sp. (strain CC9902) GN=frr PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.501e-30
Identity = 60/112 (53.57%), Postives = 87/112 (77.68%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666
            D++A M ++++  + NFN++RTGR+N ++LD+I VEYYG+   LKS+A ++TPDS ++ IQP+D S L +IEKAI  S+LG TPNNDG+VIR+ +P LT ERRKE  K+ +K
Sbjct:    5 DLEASMRKSLEATQRNFNTIRTGRANSSLLDRISVEYYGADTPLKSLATLSTPDSQTIQIQPFDISGLAAIEKAIAMSELGFTPNNDGKVIRINVPPLTEERRKEFCKMASK 116          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_SYNWW (Ribosome-recycling factor OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=frr PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.343e-30
Identity = 62/113 (54.87%), Postives = 86/113 (76.11%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669
            D + RM++TI+ +R +  S+R GR+NPAML+KI V+YYG P  +  +A I  P++  L+IQP+DK+ + SIEKAI+ SDLG+ P+NDG VIRL +PQLT ERRKEL KV+ K+
Sbjct:    8 DTEERMKKTIEHLRKDLASLRAGRANPAMLEKIMVDYYGQPTPINQLANITVPEARLLVIQPWDKTIIASIEKAIMKSDLGINPSNDGNVIRLVIPQLTEERRKELVKVLRKR 120          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_SYNPW (Ribosome-recycling factor OS=Synechococcus sp. (strain WH7803) GN=frr PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.366e-30
Identity = 59/112 (52.68%), Postives = 87/112 (77.68%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666
            D+++ M ++++  + NFN++RTGR+N ++LD+I VEYYG+   LKS+A ++TPDS ++ IQP+D S+L  IEKAI  S+LG TPNNDG+VIR+ +P LT ERRKE  K+ +K
Sbjct:    5 DLESSMRKSVEATQRNFNTIRTGRANSSLLDRISVEYYGAETPLKSLATLSTPDSQTIQIQPFDISALALIEKAIAMSELGFTPNNDGKVIRINVPPLTEERRKEFCKLASK 116          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_MICAN (Ribosome-recycling factor OS=Microcystis aeruginosa (strain NIES-843) GN=frr PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.366e-30
Identity = 59/112 (52.68%), Postives = 91/112 (81.25%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666
            +V+ +M++T++  +  FN++RTGR+N ++LD+I VEYYG    LKS+A I+TPD++++ IQP+D++S+ +IEKAI  SD+G+TP+NDG+ IRL +P LTS+RRKEL K+ AK
Sbjct:    5 EVQDQMQKTVESTQRAFNTIRTGRANASLLDRIVVEYYGMETPLKSLATISTPDATTIAIQPFDRTSMGAIEKAISLSDVGLTPSNDGQTIRLNIPPLTSDRRKELVKLAAK 116          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_ALKOO (Ribosome-recycling factor OS=Alkaliphilus oremlandii (strain OhILAs) GN=frr PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.366e-30
Identity = 62/112 (55.36%), Postives = 85/112 (75.89%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666
            +++ +M +TI+ ++    S+R GR+NPAMLD+I VEYYGSP  +K IA I  P+   + IQPYD S+L SIEKAI+ SDLG+ P+NDG++IR+ +PQLT ERRKEL+KV  K
Sbjct:    8 NLEEKMNKTINALKDELASIRAGRANPAMLDRIVVEYYGSPTPIKQIAAITAPEPRIISIQPYDGSALSSIEKAILQSDLGVNPSNDGKLIRIIVPQLTEERRKELTKVAKK 119          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_SYNP2 (Ribosome-recycling factor OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=frr PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.702e-30
Identity = 59/112 (52.68%), Postives = 87/112 (77.68%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666
            +++  M++TI+  + +FN++RTGR++ ++LD+I VEYYG+   LKS+A I+TPDSS+++IQP+D+ SL  +E+AI  SDLG+TPNNDG  IRL +P LT ERR+EL K   K
Sbjct:    5 ELRENMQKTIEATQRSFNTLRTGRASASLLDRITVEYYGAETPLKSLASISTPDSSTIMIQPFDRGSLSDVERAISMSDLGLTPNNDGTNIRLNIPPLTKERRQELVKTAGK 116          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_PROMP (Ribosome-recycling factor OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=frr PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.702e-30
Identity = 59/112 (52.68%), Postives = 89/112 (79.46%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666
            ++++ M ++++  + NFN++RTGR+N ++LD+I VEYYG+   +KS+A I+T DS ++ IQP+D SSL++IEKAI  SDLG+TPNNDG+VIR+ +P LT ERRKE  K+ +K
Sbjct:    5 EIQSSMNKSVEATQRNFNTIRTGRANASLLDRISVEYYGAETPIKSLASISTIDSQTISIQPFDISSLQTIEKAISVSDLGITPNNDGKVIRINVPPLTEERRKEFCKLASK 116          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_PROMA (Ribosome-recycling factor OS=Prochlorococcus marinus GN=frr PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.447e-30
Identity = 59/112 (52.68%), Postives = 86/112 (76.79%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666
            +V+  M+++++  + NFN++RTGR+N ++LD++ VEYYG+   LKS+A I+TPDS +L IQP+D  SL  IEKAI  SDLG TPNNDG++IR+ +P LT ERRK+  K+ +K
Sbjct:    5 EVELNMQKSVEACQRNFNTIRTGRANTSLLDRLTVEYYGADTPLKSLATISTPDSQTLAIQPFDLGSLGLIEKAISISDLGFTPNNDGKIIRINIPPLTEERRKQFCKLASK 116          
The following BLAST results are available for this feature:
BLAST of CK939527 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_PROMM6.736e-3152.68Ribosome-recycling factor OS=Prochlorococcus marin... [more]
RRF_CYAA58.797e-3151.79Ribosome-recycling factor OS=Cyanothece sp. (strai... [more]
RRF_SYNS91.501e-3053.57Ribosome-recycling factor OS=Synechococcus sp. (st... [more]
RRF_SYNWW3.343e-3054.87Ribosome-recycling factor OS=Syntrophomonas wolfei... [more]
RRF_SYNPW4.366e-3052.68Ribosome-recycling factor OS=Synechococcus sp. (st... [more]
RRF_MICAN4.366e-3052.68Ribosome-recycling factor OS=Microcystis aeruginos... [more]
RRF_ALKOO4.366e-3055.36Ribosome-recycling factor OS=Alkaliphilus oremland... [more]
RRF_SYNP25.702e-3052.68Ribosome-recycling factor OS=Synechococcus sp. (st... [more]
RRF_PROMP5.702e-3052.68Ribosome-recycling factor OS=Prochlorococcus marin... [more]
RRF_PROMA7.447e-3052.68Ribosome-recycling factor OS=Prochlorococcus marin... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004749_D04 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IF_D04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939527 ID=CK939527; Name=CK939527; organism=Citrus sinensis; type=EST; length=671bp
GCGGGGAACTANNNTCTTAAGTCTGAGCGAGCGTTCATGGCCACGCACTT
TTCTTCAACAGGGCCCATGCGGTCCATTTTCCAACTGAAATCAAATCCTC
CCAAATGCCTCCTTTTCCTCCCTGATTCTTGTCATAGAAGAGCCGAAACT
GCCACGTGCCGTGCTAGCAGCGTTAGTGTGCGCCAGTGGAGCTCAGCTGC
AAACTACTCTAGACTTGTGAAATTATCCAACAAACCTATCGTTGTAAGAC
AACTGGCACACAAGAGAAATGGAGTTGTGAGGTGTGCAACTATTGAAGAA
ATTGAAGCGGAAAAATCTTCCATTGAGAAGGATGTTAAAGCTAGGATGGA
AAGGACTATCGATATGGTCCGAACCAATTTCAATTCCGTGAGGACAGGAA
GATCGAATCCAGCTATGCTAGATAAGATTGAGGTGGAATACTATGGAAGC
CCAGTAAGTTTGAAGAGCATAGCTCAAATCAATACCCCTGATTCAAGTTC
TCTATTGATTCAACCATATGACAAATCCAGCTTAAAGTCTATAGAGAAGG
CCATAGTAAGCTCTGATCTTGGCATGACCCCAAACAATGATGGTGAAGTC
ATACGGTTAACCCTTCCTCAATTGACATCCGAAAGGAGGAAGGAACTGTC
AAAGGTTGTGGCCAAACAGGC
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