CK939527
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_PROM4 (Ribosome-recycling factor OS=Prochlorococcus marinus (strain MIT 9211) GN=frr PE=3 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 7.447e-30 Identity = 58/112 (51.79%), Postives = 86/112 (76.79%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666 +++ M ++++ + NFN++RTGR+N ++LD++ VEYYG+ LKS+A I+TPDS ++ IQP+D SSL IEK+I SDLG TPNNDG++IR+ +P LT ERRKE K+ +K Sbjct: 5 ELEQNMRKSVEAAQRNFNTIRTGRANTSLLDRLTVEYYGADTPLKSLATISTPDSQTISIQPFDLSSLVLIEKSIAMSDLGFTPNNDGKIIRINIPPLTEERRKEFCKLASK 116
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_ALKMQ (Ribosome-recycling factor OS=Alkaliphilus metalliredigens (strain QYMF) GN=frr PE=3 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 7.447e-30 Identity = 57/111 (51.35%), Postives = 87/111 (78.38%), Query Frame = 1 Query: 334 VKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666 ++ +M +T+ +++ +FNS+R G++NP+MLD+I V+YYGS LK +A ++ P+ L+IQPYD S + IEKA++ SDLG+ P+NDG++IRL +PQLT ERRKEL+KVV + Sbjct: 9 LEEKMTKTLGVLKDDFNSIRAGKANPSMLDRITVDYYGSITPLKQVASVSAPEPRLLIIQPYDPSVINGIEKALMMSDLGLNPSNDGKIIRLNIPQLTEERRKELTKVVKR 119
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_PROM5 (Ribosome-recycling factor OS=Prochlorococcus marinus (strain MIT 9515) GN=frr PE=3 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 2.830e-29 Identity = 58/112 (51.79%), Postives = 87/112 (77.68%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666 ++++ M ++++ + NFN++RTGR+N ++LD+I VEYYG+ +KS+A I T DS ++ IQP+D S L++IEKAI SDLG+TPNNDG+VIR+ +P LT ERRKE K+ +K Sbjct: 5 EIQSSMNKSVEATQRNFNTIRTGRANASLLDRISVEYYGAETPIKSLASIATVDSQTISIQPFDISCLQAIEKAISMSDLGITPNNDGKVIRINVPPLTEERRKEFCKLASK 116
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_PROM9 (Ribosome-recycling factor OS=Prochlorococcus marinus (strain MIT 9312) GN=frr PE=3 SV=1) HSP 1 Score: 128.257 bits (321), Expect = 3.696e-29 Identity = 58/112 (51.79%), Postives = 87/112 (77.68%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666 +++ M ++I+ + NFN++RTGR+N ++LD+I VEYYG+ +KS+A I+T DS ++ IQP+D S L++IEK+I SDLG+TPNNDG+VIR+ +P LT ERRKE K+ +K Sbjct: 5 EIQENMNKSIEATQRNFNTIRTGRANASLLDRISVEYYGAETPIKSLATISTVDSQTISIQPFDISCLQAIEKSISMSDLGITPNNDGKVIRINVPPLTEERRKEFCKLASK 116
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_BACSK (Ribosome-recycling factor OS=Bacillus clausii (strain KSM-K16) GN=frr PE=3 SV=1) HSP 1 Score: 128.257 bits (321), Expect = 3.696e-29 Identity = 57/112 (50.89%), Postives = 84/112 (75.00%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666 D K RM++ ID++ +R GR+NPA+LD++ VEYYG+ L +A + P++ LLI PYDK+++ SIEKAI+ SDLG+TP+NDG+VIR+ +P LT ERRK+L ++V+K Sbjct: 8 DAKTRMDKAIDVLSRELAKLRAGRANPALLDRVTVEYYGAQTPLNQLASVTVPEARLLLITPYDKTAVASIEKAILKSDLGLTPSNDGQVIRIAIPPLTEERRKDLVRLVSK 119
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_PROMS (Ribosome-recycling factor OS=Prochlorococcus marinus (strain AS9601) GN=frr PE=3 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 4.827e-29 Identity = 57/112 (50.89%), Postives = 87/112 (77.68%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666 +++ M ++I+ + NFN++RTGR+N ++LD++ VEYYG+ +KS+A I+T DS ++ IQP+D S L++IEK+I SDLG+TPNNDG+VIR+ +P LT ERRKE K+ +K Sbjct: 5 EIQENMNKSIEATQRNFNTIRTGRANASLLDRVSVEYYGAETPIKSLATISTVDSQTISIQPFDISCLQAIEKSISMSDLGITPNNDGKVIRINVPPLTEERRKEFCKLASK 116
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_GLOVI (Ribosome-recycling factor OS=Gloeobacter violaceus GN=frr PE=3 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 6.304e-29 Identity = 59/105 (56.19%), Postives = 82/105 (78.10%), Query Frame = 1 Query: 346 MERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660 M + I+ NF ++RTGR++ ++LD+I VEYYG P LK++A I TPD+S++LIQPYD SSL+ IEK I+ SDLG+ P+NDG+ IRL +P LT+ERRK+L KV+ Sbjct: 10 MRKAIEATAGNFATIRTGRASTSLLDRINVEYYGQPTPLKTLATITTPDASTVLIQPYDPSSLRLIEKTILESDLGLPPSNDGKTIRLNIPPLTAERRKDLVKVL 114
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_HELMI (Ribosome-recycling factor OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=frr PE=3 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 1.075e-28 Identity = 56/113 (49.56%), Postives = 85/113 (75.22%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669 + + +M++T++ +R + +R GR+NPA+L+K+ VEYYG+P + +A I+ P++ L+IQP+DKS L ++EKAI+ SDLG+TP +DG VIRL +PQLT ERR EL K V K+ Sbjct: 8 ETEDKMKKTVEALRKEYQHIRAGRANPALLEKVTVEYYGAPTPVNQLANISAPEARLLVIQPWDKSVLPALEKAILKSDLGLTPTSDGAVIRLVIPQLTQERRSELVKTVKKR 120
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_PROM2 (Ribosome-recycling factor OS=Prochlorococcus marinus (strain MIT 9215) GN=frr PE=3 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 1.404e-28 Identity = 56/112 (50.00%), Postives = 87/112 (77.68%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666 +++ M ++I+ + NFN++RTGR+N ++LD++ V+YYG+ +KS+A I+T DS ++ IQP+D S L++IEK+I SDLG+TPNNDG+VIR+ +P LT ERRKE K+ +K Sbjct: 5 EIQENMNKSIEATQRNFNTIRTGRANASLLDRVSVDYYGAETPIKSLATISTIDSQTISIQPFDISCLQAIEKSISMSDLGITPNNDGKVIRINVPPLTEERRKEFCKLASK 116
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_GEOSW (Ribosome-recycling factor OS=Geobacillus sp. (strain WCH70) GN=frr PE=3 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 3.129e-28 Identity = 56/110 (50.91%), Postives = 82/110 (74.55%), Query Frame = 1 Query: 337 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666 K +M++ + ++R GR+NP++L+K+ V+YYG P + +A I+ P++ L+IQPYDKS +K IEKAI+SSDLG+TP+NDG VIR+T+P LT ERR+EL K+V K Sbjct: 10 KEKMDKAVQAFTRELATIRAGRANPSLLEKVTVDYYGMPTPIIQLASISVPEARLLVIQPYDKSVIKDIEKAILSSDLGLTPSNDGSVIRITIPPLTEERRRELVKLVKK 119 The following BLAST results are available for this feature:
BLAST of CK939527 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CK939527 ID=CK939527; Name=CK939527; organism=Citrus sinensis; type=EST; length=671bpback to top |