CK939527

Overview
NameCK939527
Unique NameCK939527
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length671
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_PROM4 (Ribosome-recycling factor OS=Prochlorococcus marinus (strain MIT 9211) GN=frr PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.447e-30
Identity = 58/112 (51.79%), Postives = 86/112 (76.79%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666
            +++  M ++++  + NFN++RTGR+N ++LD++ VEYYG+   LKS+A I+TPDS ++ IQP+D SSL  IEK+I  SDLG TPNNDG++IR+ +P LT ERRKE  K+ +K
Sbjct:    5 ELEQNMRKSVEAAQRNFNTIRTGRANTSLLDRLTVEYYGADTPLKSLATISTPDSQTISIQPFDLSSLVLIEKSIAMSDLGFTPNNDGKIIRINIPPLTEERRKEFCKLASK 116          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_ALKMQ (Ribosome-recycling factor OS=Alkaliphilus metalliredigens (strain QYMF) GN=frr PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.447e-30
Identity = 57/111 (51.35%), Postives = 87/111 (78.38%), Query Frame = 1
Query:  334 VKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666
            ++ +M +T+ +++ +FNS+R G++NP+MLD+I V+YYGS   LK +A ++ P+   L+IQPYD S +  IEKA++ SDLG+ P+NDG++IRL +PQLT ERRKEL+KVV +
Sbjct:    9 LEEKMTKTLGVLKDDFNSIRAGKANPSMLDRITVDYYGSITPLKQVASVSAPEPRLLIIQPYDPSVINGIEKALMMSDLGLNPSNDGKIIRLNIPQLTEERRKELTKVVKR 119          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_PROM5 (Ribosome-recycling factor OS=Prochlorococcus marinus (strain MIT 9515) GN=frr PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.830e-29
Identity = 58/112 (51.79%), Postives = 87/112 (77.68%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666
            ++++ M ++++  + NFN++RTGR+N ++LD+I VEYYG+   +KS+A I T DS ++ IQP+D S L++IEKAI  SDLG+TPNNDG+VIR+ +P LT ERRKE  K+ +K
Sbjct:    5 EIQSSMNKSVEATQRNFNTIRTGRANASLLDRISVEYYGAETPIKSLASIATVDSQTISIQPFDISCLQAIEKAISMSDLGITPNNDGKVIRINVPPLTEERRKEFCKLASK 116          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_PROM9 (Ribosome-recycling factor OS=Prochlorococcus marinus (strain MIT 9312) GN=frr PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.696e-29
Identity = 58/112 (51.79%), Postives = 87/112 (77.68%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666
            +++  M ++I+  + NFN++RTGR+N ++LD+I VEYYG+   +KS+A I+T DS ++ IQP+D S L++IEK+I  SDLG+TPNNDG+VIR+ +P LT ERRKE  K+ +K
Sbjct:    5 EIQENMNKSIEATQRNFNTIRTGRANASLLDRISVEYYGAETPIKSLATISTVDSQTISIQPFDISCLQAIEKSISMSDLGITPNNDGKVIRINVPPLTEERRKEFCKLASK 116          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_BACSK (Ribosome-recycling factor OS=Bacillus clausii (strain KSM-K16) GN=frr PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.696e-29
Identity = 57/112 (50.89%), Postives = 84/112 (75.00%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666
            D K RM++ ID++      +R GR+NPA+LD++ VEYYG+   L  +A +  P++  LLI PYDK+++ SIEKAI+ SDLG+TP+NDG+VIR+ +P LT ERRK+L ++V+K
Sbjct:    8 DAKTRMDKAIDVLSRELAKLRAGRANPALLDRVTVEYYGAQTPLNQLASVTVPEARLLLITPYDKTAVASIEKAILKSDLGLTPSNDGQVIRIAIPPLTEERRKDLVRLVSK 119          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_PROMS (Ribosome-recycling factor OS=Prochlorococcus marinus (strain AS9601) GN=frr PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.827e-29
Identity = 57/112 (50.89%), Postives = 87/112 (77.68%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666
            +++  M ++I+  + NFN++RTGR+N ++LD++ VEYYG+   +KS+A I+T DS ++ IQP+D S L++IEK+I  SDLG+TPNNDG+VIR+ +P LT ERRKE  K+ +K
Sbjct:    5 EIQENMNKSIEATQRNFNTIRTGRANASLLDRVSVEYYGAETPIKSLATISTVDSQTISIQPFDISCLQAIEKSISMSDLGITPNNDGKVIRINVPPLTEERRKEFCKLASK 116          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_GLOVI (Ribosome-recycling factor OS=Gloeobacter violaceus GN=frr PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.304e-29
Identity = 59/105 (56.19%), Postives = 82/105 (78.10%), Query Frame = 1
Query:  346 MERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660
            M + I+    NF ++RTGR++ ++LD+I VEYYG P  LK++A I TPD+S++LIQPYD SSL+ IEK I+ SDLG+ P+NDG+ IRL +P LT+ERRK+L KV+
Sbjct:   10 MRKAIEATAGNFATIRTGRASTSLLDRINVEYYGQPTPLKTLATITTPDASTVLIQPYDPSSLRLIEKTILESDLGLPPSNDGKTIRLNIPPLTAERRKDLVKVL 114          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_HELMI (Ribosome-recycling factor OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=frr PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.075e-28
Identity = 56/113 (49.56%), Postives = 85/113 (75.22%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669
            + + +M++T++ +R  +  +R GR+NPA+L+K+ VEYYG+P  +  +A I+ P++  L+IQP+DKS L ++EKAI+ SDLG+TP +DG VIRL +PQLT ERR EL K V K+
Sbjct:    8 ETEDKMKKTVEALRKEYQHIRAGRANPALLEKVTVEYYGAPTPVNQLANISAPEARLLVIQPWDKSVLPALEKAILKSDLGLTPTSDGAVIRLVIPQLTQERRSELVKTVKKR 120          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_PROM2 (Ribosome-recycling factor OS=Prochlorococcus marinus (strain MIT 9215) GN=frr PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.404e-28
Identity = 56/112 (50.00%), Postives = 87/112 (77.68%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666
            +++  M ++I+  + NFN++RTGR+N ++LD++ V+YYG+   +KS+A I+T DS ++ IQP+D S L++IEK+I  SDLG+TPNNDG+VIR+ +P LT ERRKE  K+ +K
Sbjct:    5 EIQENMNKSIEATQRNFNTIRTGRANASLLDRVSVDYYGAETPIKSLATISTIDSQTISIQPFDISCLQAIEKSISMSDLGITPNNDGKVIRINVPPLTEERRKEFCKLASK 116          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_GEOSW (Ribosome-recycling factor OS=Geobacillus sp. (strain WCH70) GN=frr PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.129e-28
Identity = 56/110 (50.91%), Postives = 82/110 (74.55%), Query Frame = 1
Query:  337 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666
            K +M++ +        ++R GR+NP++L+K+ V+YYG P  +  +A I+ P++  L+IQPYDKS +K IEKAI+SSDLG+TP+NDG VIR+T+P LT ERR+EL K+V K
Sbjct:   10 KEKMDKAVQAFTRELATIRAGRANPSLLEKVTVDYYGMPTPIIQLASISVPEARLLVIQPYDKSVIKDIEKAILSSDLGLTPSNDGSVIRITIPPLTEERRRELVKLVKK 119          
The following BLAST results are available for this feature:
BLAST of CK939527 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_PROM47.447e-3051.79Ribosome-recycling factor OS=Prochlorococcus marin... [more]
RRF_ALKMQ7.447e-3051.35Ribosome-recycling factor OS=Alkaliphilus metallir... [more]
RRF_PROM52.830e-2951.79Ribosome-recycling factor OS=Prochlorococcus marin... [more]
RRF_PROM93.696e-2951.79Ribosome-recycling factor OS=Prochlorococcus marin... [more]
RRF_BACSK3.696e-2950.89Ribosome-recycling factor OS=Bacillus clausii (str... [more]
RRF_PROMS4.827e-2950.89Ribosome-recycling factor OS=Prochlorococcus marin... [more]
RRF_GLOVI6.304e-2956.19Ribosome-recycling factor OS=Gloeobacter violaceus... [more]
RRF_HELMI1.075e-2849.56Ribosome-recycling factor OS=Heliobacterium modest... [more]
RRF_PROM21.404e-2850.00Ribosome-recycling factor OS=Prochlorococcus marin... [more]
RRF_GEOSW3.129e-2850.91Ribosome-recycling factor OS=Geobacillus sp. (stra... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004749_D04 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IF_D04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939527 ID=CK939527; Name=CK939527; organism=Citrus sinensis; type=EST; length=671bp
GCGGGGAACTANNNTCTTAAGTCTGAGCGAGCGTTCATGGCCACGCACTT
TTCTTCAACAGGGCCCATGCGGTCCATTTTCCAACTGAAATCAAATCCTC
CCAAATGCCTCCTTTTCCTCCCTGATTCTTGTCATAGAAGAGCCGAAACT
GCCACGTGCCGTGCTAGCAGCGTTAGTGTGCGCCAGTGGAGCTCAGCTGC
AAACTACTCTAGACTTGTGAAATTATCCAACAAACCTATCGTTGTAAGAC
AACTGGCACACAAGAGAAATGGAGTTGTGAGGTGTGCAACTATTGAAGAA
ATTGAAGCGGAAAAATCTTCCATTGAGAAGGATGTTAAAGCTAGGATGGA
AAGGACTATCGATATGGTCCGAACCAATTTCAATTCCGTGAGGACAGGAA
GATCGAATCCAGCTATGCTAGATAAGATTGAGGTGGAATACTATGGAAGC
CCAGTAAGTTTGAAGAGCATAGCTCAAATCAATACCCCTGATTCAAGTTC
TCTATTGATTCAACCATATGACAAATCCAGCTTAAAGTCTATAGAGAAGG
CCATAGTAAGCTCTGATCTTGGCATGACCCCAAACAATGATGGTGAAGTC
ATACGGTTAACCCTTCCTCAATTGACATCCGAAAGGAGGAAGGAACTGTC
AAAGGTTGTGGCCAAACAGGC
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