CK939527
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_HAEPS (Ribosome-recycling factor OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=frr PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 8.818e-23 Identity = 46/110 (41.82%), Postives = 80/110 (72.73%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660 D + RME++++ ++ + + +RTGR+ P++LD I+VEYYGS L+ +A + D+ +L + +D+S + ++EKAI++SDLG+ P++ G IR+ LP LT ERR++L K+V Sbjct: 8 DTQERMEKSLEALKGHISKIRTGRAQPSLLDAIQVEYYGSATPLRQLANVVAEDARTLAVTVFDRSLISAVEKAILTSDLGLNPSSAGTTIRVPLPPLTEERRRDLIKIV 117
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_FRASN (Ribosome-recycling factor OS=Frankia sp. (strain EAN1pec) GN=frr PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 8.818e-23 Identity = 44/109 (40.37%), Postives = 77/109 (70.64%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKV 657 + + +M++ + + + +F ++RTGR PA+ K+ V+YYG+P ++ +A + P+ ++I PYDKSSL ++EKA+ SDLG+ P+NDG +IR P+L+ +RR++L KV Sbjct: 8 EAEEKMDKAVSVAKDDFANIRTGRITPAVFGKVLVDYYGAPTPVQQLASFHIPEPRMVIITPYDKSSLGAVEKAVRDSDLGVNPSNDGTIIRCVFPELSEQRRRDLVKV 116
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_CHRSD (Ribosome-recycling factor OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=frr PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 8.818e-23 Identity = 47/108 (43.52%), Postives = 75/108 (69.44%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSK 654 D ARM+++++ + NF+ +RTGR++P++LD + VEYYGS + L +A +N D+ +L + P++KS + +EKAI++SDLG+ P G VIR+ LP LT E R+ K Sbjct: 8 DADARMKKSVEALNANFHKIRTGRAHPSLLDAVTVEYYGSEMPLNQVASVNVEDARTLAVVPWEKSMVPKVEKAIMTSDLGLNPAAAGNVIRVPLPPLTEETRRNYIK 115
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_THEFY (Ribosome-recycling factor OS=Thermobifida fusca (strain YX) GN=frr PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.152e-22 Identity = 47/109 (43.12%), Postives = 74/109 (67.89%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKV 657 + + +ME+ + + + +F S+RTGR +PA +I VEYYG+ + +A P+ ++I PYDK+++ +IEKAI SDLG+ P+NDG +IR+ P+L+ ERRKE KV Sbjct: 8 EAEEKMEKAVLVTKEDFASIRTGRPSPATFSRITVEYYGAMTPVNQLASFQVPEPRMVIISPYDKAAMPAIEKAIRESDLGVNPSNDGNIIRVVFPELSEERRKEYVKV 116
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_SERP5 (Ribosome-recycling factor OS=Serratia proteamaculans (strain 568) GN=frr PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.152e-22 Identity = 49/113 (43.36%), Postives = 78/113 (69.03%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669 D +RME++++ + + +RTGR++P++LD I VEYYG+ L+ +A + DS +L I +D+S ++EKAI+SSDLG+ P++ G IR+ LP LT ERRK+L K+V + Sbjct: 8 DADSRMEKSVEAFKNQISKIRTGRASPSILDGIMVEYYGASTPLRQLASVTVEDSRTLKINVFDRSISAAVEKAIMSSDLGLNPSSAGSDIRVPLPALTEERRKDLIKIVRNE 120
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_MACCJ (Ribosome-recycling factor OS=Macrococcus caseolyticus (strain JCSC5402) GN=frr PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.152e-22 Identity = 48/113 (42.48%), Postives = 80/113 (70.80%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669 ++K++ME++I+ ++ +F ++R G +N +LD++ V YYG+ ++ +A I+ P+ LL+ PYDK+S+ I KAI ++LG+ P +DG VIR+T+P LT ERRKEL K K+ Sbjct: 8 ELKSKMEKSIESLQRDFAAIRAGHANANLLDRVSVVYYGAETPVQQLAGISVPEPRMLLVTPYDKTSIDDILKAINMANLGVNPTSDGNVIRITVPALTEERRKELVKEAKKE 120
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_LEPCP (Ribosome-recycling factor OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=frr PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.152e-22 Identity = 46/110 (41.82%), Postives = 79/110 (71.82%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660 + +A+M ++++ + +RTGR++P +LD++ V+YYGS + L +A + D+ ++ +QP++KS + IEKAI SDLG+ P++ G++IR+ +P LT ERRKEL+KVV Sbjct: 9 NAEAKMAKSVEAFKNELQKIRTGRAHPGILDQVHVDYYGSNLPLSQVANVTLIDARTISVQPWEKSMAQKIEKAIRESDLGLNPSSMGDLIRVPMPALTEERRKELTKVV 118
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_CHLAD (Ribosome-recycling factor OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=frr PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.152e-22 Identity = 48/110 (43.64%), Postives = 78/110 (70.91%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660 + +A +++ + +R + S+RTGR++ A+++ + VE YG+ + L +A I+ P+ ++IQPYD +K+IEKAI SDLG+ P+NDG +IRL +P LT ERR+EL K+V Sbjct: 8 EYEAHLKKATEALRHHLASIRTGRASAALVEHLHVEAYGTNMPLNQLANISVPEPRMIIIQPYDTGMIKAIEKAIQQSDLGLNPSNDGRIIRLPVPPLTEERRRELVKMV 117
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_THELT (Ribosome-recycling factor OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=frr PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.504e-22 Identity = 47/104 (45.19%), Postives = 75/104 (72.12%), Query Frame = 1 Query: 343 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSK 654 RM + ++ + +RTGR +PA+L++I+V+YYG+ + +A +N + +L+I+P+D+S L SIEKAI +SDLG+TP NDG VIRLT P T+E+R++ +K Sbjct: 12 RMNKAVEKISEELRKMRTGRPSPAILEEIKVDYYGAQTPISQLATVNITEDRALIIKPWDRSVLSSIEKAIFASDLGLTPQNDGNVIRLTFPTPTTEQRQKWAK 115
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_TERTT (Ribosome-recycling factor OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=frr PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.504e-22 Identity = 48/104 (46.15%), Postives = 73/104 (70.19%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRK 642 D +ARM++T++ + NFN +RTGR++P++LD + V YYGS L +A I+ D+ +L + P++KS + IEKAI+ SDLG+ P GE+IR+ +P LT E RK Sbjct: 8 DAEARMKKTVEALGINFNKIRTGRAHPSILDGVSVSYYGSDTPLSQVANISVLDARTLSLSPWEKSMVPEIEKAIMKSDLGLNPVTTGELIRVPMPALTEESRK 111 The following BLAST results are available for this feature:
BLAST of CK939527 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CK939527 ID=CK939527; Name=CK939527; organism=Citrus sinensis; type=EST; length=671bpback to top |