CK939527

Overview
NameCK939527
Unique NameCK939527
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length671
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_HAEPS (Ribosome-recycling factor OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=frr PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.818e-23
Identity = 46/110 (41.82%), Postives = 80/110 (72.73%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660
            D + RME++++ ++ + + +RTGR+ P++LD I+VEYYGS   L+ +A +   D+ +L +  +D+S + ++EKAI++SDLG+ P++ G  IR+ LP LT ERR++L K+V
Sbjct:    8 DTQERMEKSLEALKGHISKIRTGRAQPSLLDAIQVEYYGSATPLRQLANVVAEDARTLAVTVFDRSLISAVEKAILTSDLGLNPSSAGTTIRVPLPPLTEERRRDLIKIV 117          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_FRASN (Ribosome-recycling factor OS=Frankia sp. (strain EAN1pec) GN=frr PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.818e-23
Identity = 44/109 (40.37%), Postives = 77/109 (70.64%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKV 657
            + + +M++ + + + +F ++RTGR  PA+  K+ V+YYG+P  ++ +A  + P+   ++I PYDKSSL ++EKA+  SDLG+ P+NDG +IR   P+L+ +RR++L KV
Sbjct:    8 EAEEKMDKAVSVAKDDFANIRTGRITPAVFGKVLVDYYGAPTPVQQLASFHIPEPRMVIITPYDKSSLGAVEKAVRDSDLGVNPSNDGTIIRCVFPELSEQRRRDLVKV 116          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_CHRSD (Ribosome-recycling factor OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=frr PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.818e-23
Identity = 47/108 (43.52%), Postives = 75/108 (69.44%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSK 654
            D  ARM+++++ +  NF+ +RTGR++P++LD + VEYYGS + L  +A +N  D+ +L + P++KS +  +EKAI++SDLG+ P   G VIR+ LP LT E R+   K
Sbjct:    8 DADARMKKSVEALNANFHKIRTGRAHPSLLDAVTVEYYGSEMPLNQVASVNVEDARTLAVVPWEKSMVPKVEKAIMTSDLGLNPAAAGNVIRVPLPPLTEETRRNYIK 115          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_THEFY (Ribosome-recycling factor OS=Thermobifida fusca (strain YX) GN=frr PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.152e-22
Identity = 47/109 (43.12%), Postives = 74/109 (67.89%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKV 657
            + + +ME+ + + + +F S+RTGR +PA   +I VEYYG+   +  +A    P+   ++I PYDK+++ +IEKAI  SDLG+ P+NDG +IR+  P+L+ ERRKE  KV
Sbjct:    8 EAEEKMEKAVLVTKEDFASIRTGRPSPATFSRITVEYYGAMTPVNQLASFQVPEPRMVIISPYDKAAMPAIEKAIRESDLGVNPSNDGNIIRVVFPELSEERRKEYVKV 116          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_SERP5 (Ribosome-recycling factor OS=Serratia proteamaculans (strain 568) GN=frr PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.152e-22
Identity = 49/113 (43.36%), Postives = 78/113 (69.03%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669
            D  +RME++++  +   + +RTGR++P++LD I VEYYG+   L+ +A +   DS +L I  +D+S   ++EKAI+SSDLG+ P++ G  IR+ LP LT ERRK+L K+V  +
Sbjct:    8 DADSRMEKSVEAFKNQISKIRTGRASPSILDGIMVEYYGASTPLRQLASVTVEDSRTLKINVFDRSISAAVEKAIMSSDLGLNPSSAGSDIRVPLPALTEERRKDLIKIVRNE 120          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_MACCJ (Ribosome-recycling factor OS=Macrococcus caseolyticus (strain JCSC5402) GN=frr PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.152e-22
Identity = 48/113 (42.48%), Postives = 80/113 (70.80%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669
            ++K++ME++I+ ++ +F ++R G +N  +LD++ V YYG+   ++ +A I+ P+   LL+ PYDK+S+  I KAI  ++LG+ P +DG VIR+T+P LT ERRKEL K   K+
Sbjct:    8 ELKSKMEKSIESLQRDFAAIRAGHANANLLDRVSVVYYGAETPVQQLAGISVPEPRMLLVTPYDKTSIDDILKAINMANLGVNPTSDGNVIRITVPALTEERRKELVKEAKKE 120          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_LEPCP (Ribosome-recycling factor OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=frr PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.152e-22
Identity = 46/110 (41.82%), Postives = 79/110 (71.82%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660
            + +A+M ++++  +     +RTGR++P +LD++ V+YYGS + L  +A +   D+ ++ +QP++KS  + IEKAI  SDLG+ P++ G++IR+ +P LT ERRKEL+KVV
Sbjct:    9 NAEAKMAKSVEAFKNELQKIRTGRAHPGILDQVHVDYYGSNLPLSQVANVTLIDARTISVQPWEKSMAQKIEKAIRESDLGLNPSSMGDLIRVPMPALTEERRKELTKVV 118          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_CHLAD (Ribosome-recycling factor OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=frr PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.152e-22
Identity = 48/110 (43.64%), Postives = 78/110 (70.91%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660
            + +A +++  + +R +  S+RTGR++ A+++ + VE YG+ + L  +A I+ P+   ++IQPYD   +K+IEKAI  SDLG+ P+NDG +IRL +P LT ERR+EL K+V
Sbjct:    8 EYEAHLKKATEALRHHLASIRTGRASAALVEHLHVEAYGTNMPLNQLANISVPEPRMIIIQPYDTGMIKAIEKAIQQSDLGLNPSNDGRIIRLPVPPLTEERRRELVKMV 117          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_THELT (Ribosome-recycling factor OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=frr PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.504e-22
Identity = 47/104 (45.19%), Postives = 75/104 (72.12%), Query Frame = 1
Query:  343 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSK 654
            RM + ++ +      +RTGR +PA+L++I+V+YYG+   +  +A +N  +  +L+I+P+D+S L SIEKAI +SDLG+TP NDG VIRLT P  T+E+R++ +K
Sbjct:   12 RMNKAVEKISEELRKMRTGRPSPAILEEIKVDYYGAQTPISQLATVNITEDRALIIKPWDRSVLSSIEKAIFASDLGLTPQNDGNVIRLTFPTPTTEQRQKWAK 115          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_TERTT (Ribosome-recycling factor OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=frr PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.504e-22
Identity = 48/104 (46.15%), Postives = 73/104 (70.19%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRK 642
            D +ARM++T++ +  NFN +RTGR++P++LD + V YYGS   L  +A I+  D+ +L + P++KS +  IEKAI+ SDLG+ P   GE+IR+ +P LT E RK
Sbjct:    8 DAEARMKKTVEALGINFNKIRTGRAHPSILDGVSVSYYGSDTPLSQVANISVLDARTLSLSPWEKSMVPEIEKAIMKSDLGLNPVTTGELIRVPMPALTEESRK 111          
The following BLAST results are available for this feature:
BLAST of CK939527 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_HAEPS8.818e-2341.82Ribosome-recycling factor OS=Haemophilus parasuis ... [more]
RRF_FRASN8.818e-2340.37Ribosome-recycling factor OS=Frankia sp. (strain E... [more]
RRF_CHRSD8.818e-2343.52Ribosome-recycling factor OS=Chromohalobacter sale... [more]
RRF_THEFY1.152e-2243.12Ribosome-recycling factor OS=Thermobifida fusca (s... [more]
RRF_SERP51.152e-2243.36Ribosome-recycling factor OS=Serratia proteamacula... [more]
RRF_MACCJ1.152e-2242.48Ribosome-recycling factor OS=Macrococcus caseolyti... [more]
RRF_LEPCP1.152e-2241.82Ribosome-recycling factor OS=Leptothrix cholodnii ... [more]
RRF_CHLAD1.152e-2243.64Ribosome-recycling factor OS=Chloroflexus aggregan... [more]
RRF_THELT1.504e-2245.19Ribosome-recycling factor OS=Thermotoga lettingae ... [more]
RRF_TERTT1.504e-2246.15Ribosome-recycling factor OS=Teredinibacter turner... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004749_D04 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IF_D04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939527 ID=CK939527; Name=CK939527; organism=Citrus sinensis; type=EST; length=671bp
GCGGGGAACTANNNTCTTAAGTCTGAGCGAGCGTTCATGGCCACGCACTT
TTCTTCAACAGGGCCCATGCGGTCCATTTTCCAACTGAAATCAAATCCTC
CCAAATGCCTCCTTTTCCTCCCTGATTCTTGTCATAGAAGAGCCGAAACT
GCCACGTGCCGTGCTAGCAGCGTTAGTGTGCGCCAGTGGAGCTCAGCTGC
AAACTACTCTAGACTTGTGAAATTATCCAACAAACCTATCGTTGTAAGAC
AACTGGCACACAAGAGAAATGGAGTTGTGAGGTGTGCAACTATTGAAGAA
ATTGAAGCGGAAAAATCTTCCATTGAGAAGGATGTTAAAGCTAGGATGGA
AAGGACTATCGATATGGTCCGAACCAATTTCAATTCCGTGAGGACAGGAA
GATCGAATCCAGCTATGCTAGATAAGATTGAGGTGGAATACTATGGAAGC
CCAGTAAGTTTGAAGAGCATAGCTCAAATCAATACCCCTGATTCAAGTTC
TCTATTGATTCAACCATATGACAAATCCAGCTTAAAGTCTATAGAGAAGG
CCATAGTAAGCTCTGATCTTGGCATGACCCCAAACAATGATGGTGAAGTC
ATACGGTTAACCCTTCCTCAATTGACATCCGAAAGGAGGAAGGAACTGTC
AAAGGTTGTGGCCAAACAGGC
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