CK939527

Overview
NameCK939527
Unique NameCK939527
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length671
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_ERWT9 (Ribosome-recycling factor OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=frr PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.964e-22
Identity = 50/110 (45.45%), Postives = 77/110 (70.00%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660
            D + RME+ ++  R + + +RTGR++P++LD I V+YYGS   L+ +A +   DS +L I  +D+S   ++EKAI++SDLG+ P++ G  IR+ LP LT ERRK+L KVV
Sbjct:    8 DAETRMEKCVEAFRNHISKIRTGRASPSILDGIMVDYYGSATPLRQLASVTVEDSRTLKINVFDRSIGAAVEKAIMTSDLGLNPSSAGSDIRVPLPALTEERRKDLIKVV 117          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_BURPP (Ribosome-recycling factor OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=frr PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.964e-22
Identity = 46/109 (42.20%), Postives = 77/109 (70.64%), Query Frame = 1
Query:  343 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669
            +M+R+ID  + + + +RTGR++  +LD I+ +YYGSPV +  +A +   D+ ++ +QP++K  ++ +EKAI  SDLG+ P   G+VIR+ +P LT ERR+EL+KVV  +
Sbjct:   13 KMQRSIDAFKNDLSKIRTGRAHTGLLDHIQCDYYGSPVPISQVANLTLIDARTIGVQPWEKKMVQVVEKAIRESDLGLNPATQGDVIRVPMPALTEERRRELTKVVKSE 121          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_THERP (Ribosome-recycling factor OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=frr PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.566e-22
Identity = 44/113 (38.94%), Postives = 82/113 (72.57%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669
            D + RM+++I+++R     +R GR+ P++L+ +EV YYG+P  L  +A I+ P++  L++Q +D++++ ++EKAI  S+LG+ P+ DG+ +R+ LP LT ERR++L K+V ++
Sbjct:    8 DAEQRMKKSIELLRQELAGIRAGRAAPSLLEHLEVNYYGTPTPLNQLATISAPEARLLVVQVWDRNAVSAVEKAIRQSELGLNPSVDGQTLRIQLPPLTEERRRQLVKLVHEE 120          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_SODGM (Ribosome-recycling factor OS=Sodalis glossinidius (strain morsitans) GN=frr PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.566e-22
Identity = 49/110 (44.55%), Postives = 79/110 (71.82%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660
            D + RME+ +D  +++ + VRTGR++P++LD I+++YYG    L+ +A I   DS +L I  +D++   ++EKAI++SDLG+ P++ G VIR+ LP LT ERR++L KVV
Sbjct:    8 DAEIRMEKCVDAFKSHISKVRTGRASPSLLDGIQIDYYGLLTPLRQLANIIAEDSRTLAITVFDRTLAPAVEKAIMASDLGLNPSSAGTVIRVPLPPLTEERRRDLIKVV 117          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_SHEAM (Ribosome-recycling factor OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=frr PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.566e-22
Identity = 48/110 (43.64%), Postives = 75/110 (68.18%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660
            D + RM + ++  +     VRTGR++P++LD I+V YYGS   LK +  +   DS +L +  +D+S+++++EKAI+SSDLG+ P + G  IR+ LP LT ERR++L KVV
Sbjct:    8 DAQDRMGKCVEATKAQMAKVRTGRAHPSLLDTIQVNYYGSMTPLKQVGNVTIEDSRTLAVNVFDRSAIQAVEKAIMSSDLGLNPMSAGATIRIPLPPLTEERRRDLVKVV 117          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_MAGSM (Ribosome-recycling factor OS=Magnetococcus sp. (strain MC-1) GN=frr PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.566e-22
Identity = 47/112 (41.96%), Postives = 79/112 (70.54%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666
            D++ RM +++  ++    +VRTGR++ ++LD + V  YGS + L  +A +  P++  + +QP+DK  L +IEKAI  +DLG+ P+NDG+++R+ LP+LT ERRK+L K+V K
Sbjct:    8 DLEQRMNKSLAALKDELATVRTGRASTSLLDAVMVNAYGSMMPLNQVASMTVPEARMINVQPWDKGQLGAIEKAIRDADLGLNPSNDGQIVRVPLPELTEERRKDLVKLVHK 119          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_HAEIN (Ribosome-recycling factor OS=Haemophilus influenzae GN=frr PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.566e-22
Identity = 45/110 (40.91%), Postives = 80/110 (72.73%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660
            D + RME++++ ++ + + +RTGR+ P++LD I+VEYYG+   L+ +A +   D+ +L +  +D+S + ++EKAI++SDLG+ P++ G  IR+ LP LT ERR++L K+V
Sbjct:    8 DAQDRMEKSLEALKGHISKIRTGRAQPSLLDAIQVEYYGAATPLRQLANVVAEDARTLAVTVFDRSLISAVEKAILTSDLGLNPSSAGTTIRVPLPPLTEERRRDLIKIV 117          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_HAEIG (Ribosome-recycling factor OS=Haemophilus influenzae (strain PittGG) GN=frr PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.566e-22
Identity = 45/110 (40.91%), Postives = 80/110 (72.73%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660
            D + RME++++ ++ + + +RTGR+ P++LD I+VEYYG+   L+ +A +   D+ +L +  +D+S + ++EKAI++SDLG+ P++ G  IR+ LP LT ERR++L K+V
Sbjct:    8 DAQDRMEKSLEALKGHISKIRTGRAQPSLLDAIQVEYYGAATPLRQLANVVAEDARTLAVTVFDRSLISAVEKAILTSDLGLNPSSAGTTIRVPLPPLTEERRRDLIKIV 117          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_HAEI8 (Ribosome-recycling factor OS=Haemophilus influenzae (strain 86-028NP) GN=frr PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.566e-22
Identity = 45/110 (40.91%), Postives = 80/110 (72.73%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660
            D + RME++++ ++ + + +RTGR+ P++LD I+VEYYG+   L+ +A +   D+ +L +  +D+S + ++EKAI++SDLG+ P++ G  IR+ LP LT ERR++L K+V
Sbjct:    8 DAQDRMEKSLEALKGHISKIRTGRAQPSLLDAIQVEYYGAATPLRQLANVVAEDARTLAVTVFDRSLISAVEKAILTSDLGLNPSSAGTTIRVPLPPLTEERRRDLIKIV 117          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_EDWI9 (Ribosome-recycling factor OS=Edwardsiella ictaluri (strain 93-146) GN=frr PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.566e-22
Identity = 50/113 (44.25%), Postives = 78/113 (69.03%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669
            D + RM++ ++  + N + +RTGR++P +LD I+VEYYG+   L+ +A I   DS +L +  +D+S   +IEKAI++SDLG+ P + G VIR+ LP LT ERRK+L K+V  +
Sbjct:    8 DAETRMDKCVESFKGNISKIRTGRAHPNLLDGIQVEYYGTATPLRQLANIVAEDSRTLALTVFDRSMSGAIEKAILTSDLGLNPASAGTVIRVPLPPLTEERRKDLIKLVRSE 120          
The following BLAST results are available for this feature:
BLAST of CK939527 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_ERWT91.964e-2245.45Ribosome-recycling factor OS=Erwinia tasmaniensis ... [more]
RRF_BURPP1.964e-2242.20Ribosome-recycling factor OS=Burkholderia phytofir... [more]
RRF_THERP2.566e-2238.94Ribosome-recycling factor OS=Thermomicrobium roseu... [more]
RRF_SODGM2.566e-2244.55Ribosome-recycling factor OS=Sodalis glossinidius ... [more]
RRF_SHEAM2.566e-2243.64Ribosome-recycling factor OS=Shewanella amazonensi... [more]
RRF_MAGSM2.566e-2241.96Ribosome-recycling factor OS=Magnetococcus sp. (st... [more]
RRF_HAEIN2.566e-2240.91Ribosome-recycling factor OS=Haemophilus influenza... [more]
RRF_HAEIG2.566e-2240.91Ribosome-recycling factor OS=Haemophilus influenza... [more]
RRF_HAEI82.566e-2240.91Ribosome-recycling factor OS=Haemophilus influenza... [more]
RRF_EDWI92.566e-2244.25Ribosome-recycling factor OS=Edwardsiella ictaluri... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004749_D04 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IF_D04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939527 ID=CK939527; Name=CK939527; organism=Citrus sinensis; type=EST; length=671bp
GCGGGGAACTANNNTCTTAAGTCTGAGCGAGCGTTCATGGCCACGCACTT
TTCTTCAACAGGGCCCATGCGGTCCATTTTCCAACTGAAATCAAATCCTC
CCAAATGCCTCCTTTTCCTCCCTGATTCTTGTCATAGAAGAGCCGAAACT
GCCACGTGCCGTGCTAGCAGCGTTAGTGTGCGCCAGTGGAGCTCAGCTGC
AAACTACTCTAGACTTGTGAAATTATCCAACAAACCTATCGTTGTAAGAC
AACTGGCACACAAGAGAAATGGAGTTGTGAGGTGTGCAACTATTGAAGAA
ATTGAAGCGGAAAAATCTTCCATTGAGAAGGATGTTAAAGCTAGGATGGA
AAGGACTATCGATATGGTCCGAACCAATTTCAATTCCGTGAGGACAGGAA
GATCGAATCCAGCTATGCTAGATAAGATTGAGGTGGAATACTATGGAAGC
CCAGTAAGTTTGAAGAGCATAGCTCAAATCAATACCCCTGATTCAAGTTC
TCTATTGATTCAACCATATGACAAATCCAGCTTAAAGTCTATAGAGAAGG
CCATAGTAAGCTCTGATCTTGGCATGACCCCAAACAATGATGGTGAAGTC
ATACGGTTAACCCTTCCTCAATTGACATCCGAAAGGAGGAAGGAACTGTC
AAAGGTTGTGGCCAAACAGGC
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