CK939527

Overview
NameCK939527
Unique NameCK939527
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length671
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_SHEB9 (Ribosome-recycling factor OS=Shewanella baltica (strain OS195) GN=frr PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.351e-22
Identity = 47/113 (41.59%), Postives = 75/113 (66.37%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669
            D + RM + +D  +     VRTGR++P++LD I+V YYG+   L  +A +   DS +L +  +D+S+++++EKAI+SSDLG+ P + G  +R+ LP LT ERRK+  KVV  +
Sbjct:    8 DAQERMGKCVDATKNQMAKVRTGRAHPSLLDSIQVSYYGTMTPLNQVANVGVEDSRTLSVTVFDRSAIQAVEKAIMSSDLGLNPMSAGATLRIPLPALTEERRKDFIKVVRNE 120          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_SHEB8 (Ribosome-recycling factor OS=Shewanella baltica (strain OS185) GN=frr PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.351e-22
Identity = 47/113 (41.59%), Postives = 75/113 (66.37%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669
            D + RM + +D  +     VRTGR++P++LD I+V YYG+   L  +A +   DS +L +  +D+S+++++EKAI+SSDLG+ P + G  +R+ LP LT ERRK+  KVV  +
Sbjct:    8 DAQERMGKCVDATKNQMAKVRTGRAHPSLLDSIQVSYYGTMTPLNQVANVGVEDSRTLSVTVFDRSAIQAVEKAIMSSDLGLNPMSAGATLRIPLPALTEERRKDFIKVVRNE 120          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_SHEB5 (Ribosome-recycling factor OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=frr PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.351e-22
Identity = 47/113 (41.59%), Postives = 75/113 (66.37%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669
            D + RM + +D  +     VRTGR++P++LD I+V YYG+   L  +A +   DS +L +  +D+S+++++EKAI+SSDLG+ P + G  +R+ LP LT ERRK+  KVV  +
Sbjct:    8 DAQERMGKCVDATKNQMAKVRTGRAHPSLLDSIQVSYYGTMTPLNQVANVGVEDSRTLSVTVFDRSAIQAVEKAIMSSDLGLNPMSAGATLRIPLPALTEERRKDFIKVVRNE 120          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_SHEB2 (Ribosome-recycling factor OS=Shewanella baltica (strain OS223) GN=frr PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.351e-22
Identity = 47/113 (41.59%), Postives = 75/113 (66.37%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669
            D + RM + +D  +     VRTGR++P++LD I+V YYG+   L  +A +   DS +L +  +D+S+++++EKAI+SSDLG+ P + G  +R+ LP LT ERRK+  KVV  +
Sbjct:    8 DAQERMGKCVDATKNQMAKVRTGRAHPSLLDSIQVSYYGTMTPLNQVANVGVEDSRTLSVTVFDRSAIQAVEKAIMSSDLGLNPMSAGATLRIPLPALTEERRKDFIKVVRNE 120          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_PSYIN (Ribosome-recycling factor OS=Psychromonas ingrahamii (strain 37) GN=frr PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.351e-22
Identity = 46/110 (41.82%), Postives = 78/110 (70.91%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660
            D ++RM+++++  R+  + +RTGR++P++LD I V YYGS   L+ +  ++T D+ +L +  +D S +K++EKAI+ S LG+ P + G VIR+ LP LT ERR++L K+V
Sbjct:    8 DAQSRMDKSVEAFRSQLSKIRTGRAHPSLLDGIMVPYYGSNTPLRQVGNVSTEDARTLTVTVFDASLIKAVEKAIMGSSLGLNPMSAGTVIRIPLPPLTEERRRDLIKIV 117          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_BURXL (Ribosome-recycling factor OS=Burkholderia xenovorans (strain LB400) GN=frr PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.351e-22
Identity = 46/109 (42.20%), Postives = 76/109 (69.72%), Query Frame = 1
Query:  343 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669
            +M+R+ID  + + + +RTGR++  +LD I+ +YYGSPV +  +A +   D+ ++ +QP++K  +  +EKAI  SDLG+ P   G+VIR+ +P LT ERR+EL+KVV  +
Sbjct:   13 KMQRSIDAFKNDLSKIRTGRAHTGLLDHIQCDYYGSPVPISQVANLTLIDARTIGVQPWEKKMVPVVEKAIRESDLGLNPATQGDVIRVPMPALTEERRRELTKVVKSE 121          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_BRAJA (Ribosome-recycling factor OS=Bradyrhizobium japonicum GN=frr PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.351e-22
Identity = 48/112 (42.86%), Postives = 78/112 (69.64%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666
            +VK RM+  +  ++     +RTGR++ +MLD ++VE YGS + L  +A ++ P+   + +Q +DKS +K++EKAIV S+LG++P  +G+V+RL +P+L  ERRKEL KV  K
Sbjct:   11 EVKRRMQGAVQSLKHELGGLRTGRASASMLDPVQVEAYGSHMPLNQLATVSVPEPRLISVQVWDKSMVKAVEKAIVDSNLGLSPATEGQVLRLRIPELNEERRKELVKVAHK 122          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_ALHEH (Ribosome-recycling factor OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=frr PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.351e-22
Identity = 50/113 (44.25%), Postives = 73/113 (64.60%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669
            D + RM+++I+  R     +RTGR++  +LD I V YYG+ V L   A +   D+ +L + P++KS +  +EKAI SSDLG+TP   G VIR+ +P LT +RRKEL KVV  +
Sbjct:    8 DAETRMKKSIEAFRAELRKIRTGRAHTNLLDHISVTYYGTEVPLNQAASVKVEDARTLSVIPFEKSMVPEVEKAIQSSDLGLTPTTAGTVIRIPMPPLTEDRRKELVKVVRSE 120          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_ACTSZ (Ribosome-recycling factor OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=frr PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.351e-22
Identity = 44/110 (40.00%), Postives = 82/110 (74.55%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660
            D + RME++++ ++ + + +RTGR+ P++LD I+V+YYG+   L+ +A +   D+ +L +  +D+S ++++EKAI++SDLG+ P++ G  IR+ LP LT ERR++L+K+V
Sbjct:    8 DAQDRMEKSLEALKGHISKIRTGRAQPSLLDAIQVDYYGAATPLRQLANVVAEDARTLAVTVFDRSLIQAVEKAILTSDLGLNPSSAGTTIRVPLPPLTEERRRDLTKLV 117          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_SHESW (Ribosome-recycling factor OS=Shewanella sp. (strain W3-18-1) GN=frr PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.376e-22
Identity = 47/110 (42.73%), Postives = 74/110 (67.27%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660
            D + RM + +D  +     VRTGR++P++LD I+V YYG+   L  +A +   DS +L +  +D+S+++++EKAI+SSDLG+ P + G  +R+ LP LT ERRK+  KVV
Sbjct:    8 DAQERMGKCVDATKNQMAKVRTGRAHPSLLDSIQVSYYGTMTPLNQVANVGVEDSRTLSVTVFDRSAIQAVEKAIMSSDLGLNPMSAGATLRIPLPALTEERRKDFIKVV 117          
The following BLAST results are available for this feature:
BLAST of CK939527 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_SHEB93.351e-2241.59Ribosome-recycling factor OS=Shewanella baltica (s... [more]
RRF_SHEB83.351e-2241.59Ribosome-recycling factor OS=Shewanella baltica (s... [more]
RRF_SHEB53.351e-2241.59Ribosome-recycling factor OS=Shewanella baltica (s... [more]
RRF_SHEB23.351e-2241.59Ribosome-recycling factor OS=Shewanella baltica (s... [more]
RRF_PSYIN3.351e-2241.82Ribosome-recycling factor OS=Psychromonas ingraham... [more]
RRF_BURXL3.351e-2242.20Ribosome-recycling factor OS=Burkholderia xenovora... [more]
RRF_BRAJA3.351e-2242.86Ribosome-recycling factor OS=Bradyrhizobium japoni... [more]
RRF_ALHEH3.351e-2244.25Ribosome-recycling factor OS=Alkalilimnicola ehrli... [more]
RRF_ACTSZ3.351e-2240.00Ribosome-recycling factor OS=Actinobacillus succin... [more]
RRF_SHESW4.376e-2242.73Ribosome-recycling factor OS=Shewanella sp. (strai... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004749_D04 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IF_D04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939527 ID=CK939527; Name=CK939527; organism=Citrus sinensis; type=EST; length=671bp
GCGGGGAACTANNNTCTTAAGTCTGAGCGAGCGTTCATGGCCACGCACTT
TTCTTCAACAGGGCCCATGCGGTCCATTTTCCAACTGAAATCAAATCCTC
CCAAATGCCTCCTTTTCCTCCCTGATTCTTGTCATAGAAGAGCCGAAACT
GCCACGTGCCGTGCTAGCAGCGTTAGTGTGCGCCAGTGGAGCTCAGCTGC
AAACTACTCTAGACTTGTGAAATTATCCAACAAACCTATCGTTGTAAGAC
AACTGGCACACAAGAGAAATGGAGTTGTGAGGTGTGCAACTATTGAAGAA
ATTGAAGCGGAAAAATCTTCCATTGAGAAGGATGTTAAAGCTAGGATGGA
AAGGACTATCGATATGGTCCGAACCAATTTCAATTCCGTGAGGACAGGAA
GATCGAATCCAGCTATGCTAGATAAGATTGAGGTGGAATACTATGGAAGC
CCAGTAAGTTTGAAGAGCATAGCTCAAATCAATACCCCTGATTCAAGTTC
TCTATTGATTCAACCATATGACAAATCCAGCTTAAAGTCTATAGAGAAGG
CCATAGTAAGCTCTGATCTTGGCATGACCCCAAACAATGATGGTGAAGTC
ATACGGTTAACCCTTCCTCAATTGACATCCGAAAGGAGGAAGGAACTGTC
AAAGGTTGTGGCCAAACAGGC
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