CK939527
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_SHEB9 (Ribosome-recycling factor OS=Shewanella baltica (strain OS195) GN=frr PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 3.351e-22 Identity = 47/113 (41.59%), Postives = 75/113 (66.37%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669 D + RM + +D + VRTGR++P++LD I+V YYG+ L +A + DS +L + +D+S+++++EKAI+SSDLG+ P + G +R+ LP LT ERRK+ KVV + Sbjct: 8 DAQERMGKCVDATKNQMAKVRTGRAHPSLLDSIQVSYYGTMTPLNQVANVGVEDSRTLSVTVFDRSAIQAVEKAIMSSDLGLNPMSAGATLRIPLPALTEERRKDFIKVVRNE 120
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_SHEB8 (Ribosome-recycling factor OS=Shewanella baltica (strain OS185) GN=frr PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 3.351e-22 Identity = 47/113 (41.59%), Postives = 75/113 (66.37%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669 D + RM + +D + VRTGR++P++LD I+V YYG+ L +A + DS +L + +D+S+++++EKAI+SSDLG+ P + G +R+ LP LT ERRK+ KVV + Sbjct: 8 DAQERMGKCVDATKNQMAKVRTGRAHPSLLDSIQVSYYGTMTPLNQVANVGVEDSRTLSVTVFDRSAIQAVEKAIMSSDLGLNPMSAGATLRIPLPALTEERRKDFIKVVRNE 120
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_SHEB5 (Ribosome-recycling factor OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=frr PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 3.351e-22 Identity = 47/113 (41.59%), Postives = 75/113 (66.37%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669 D + RM + +D + VRTGR++P++LD I+V YYG+ L +A + DS +L + +D+S+++++EKAI+SSDLG+ P + G +R+ LP LT ERRK+ KVV + Sbjct: 8 DAQERMGKCVDATKNQMAKVRTGRAHPSLLDSIQVSYYGTMTPLNQVANVGVEDSRTLSVTVFDRSAIQAVEKAIMSSDLGLNPMSAGATLRIPLPALTEERRKDFIKVVRNE 120
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_SHEB2 (Ribosome-recycling factor OS=Shewanella baltica (strain OS223) GN=frr PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 3.351e-22 Identity = 47/113 (41.59%), Postives = 75/113 (66.37%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669 D + RM + +D + VRTGR++P++LD I+V YYG+ L +A + DS +L + +D+S+++++EKAI+SSDLG+ P + G +R+ LP LT ERRK+ KVV + Sbjct: 8 DAQERMGKCVDATKNQMAKVRTGRAHPSLLDSIQVSYYGTMTPLNQVANVGVEDSRTLSVTVFDRSAIQAVEKAIMSSDLGLNPMSAGATLRIPLPALTEERRKDFIKVVRNE 120
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_PSYIN (Ribosome-recycling factor OS=Psychromonas ingrahamii (strain 37) GN=frr PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 3.351e-22 Identity = 46/110 (41.82%), Postives = 78/110 (70.91%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660 D ++RM+++++ R+ + +RTGR++P++LD I V YYGS L+ + ++T D+ +L + +D S +K++EKAI+ S LG+ P + G VIR+ LP LT ERR++L K+V Sbjct: 8 DAQSRMDKSVEAFRSQLSKIRTGRAHPSLLDGIMVPYYGSNTPLRQVGNVSTEDARTLTVTVFDASLIKAVEKAIMGSSLGLNPMSAGTVIRIPLPPLTEERRRDLIKIV 117
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_BURXL (Ribosome-recycling factor OS=Burkholderia xenovorans (strain LB400) GN=frr PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 3.351e-22 Identity = 46/109 (42.20%), Postives = 76/109 (69.72%), Query Frame = 1 Query: 343 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669 +M+R+ID + + + +RTGR++ +LD I+ +YYGSPV + +A + D+ ++ +QP++K + +EKAI SDLG+ P G+VIR+ +P LT ERR+EL+KVV + Sbjct: 13 KMQRSIDAFKNDLSKIRTGRAHTGLLDHIQCDYYGSPVPISQVANLTLIDARTIGVQPWEKKMVPVVEKAIRESDLGLNPATQGDVIRVPMPALTEERRRELTKVVKSE 121
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_BRAJA (Ribosome-recycling factor OS=Bradyrhizobium japonicum GN=frr PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 3.351e-22 Identity = 48/112 (42.86%), Postives = 78/112 (69.64%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666 +VK RM+ + ++ +RTGR++ +MLD ++VE YGS + L +A ++ P+ + +Q +DKS +K++EKAIV S+LG++P +G+V+RL +P+L ERRKEL KV K Sbjct: 11 EVKRRMQGAVQSLKHELGGLRTGRASASMLDPVQVEAYGSHMPLNQLATVSVPEPRLISVQVWDKSMVKAVEKAIVDSNLGLSPATEGQVLRLRIPELNEERRKELVKVAHK 122
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_ALHEH (Ribosome-recycling factor OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=frr PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 3.351e-22 Identity = 50/113 (44.25%), Postives = 73/113 (64.60%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669 D + RM+++I+ R +RTGR++ +LD I V YYG+ V L A + D+ +L + P++KS + +EKAI SSDLG+TP G VIR+ +P LT +RRKEL KVV + Sbjct: 8 DAETRMKKSIEAFRAELRKIRTGRAHTNLLDHISVTYYGTEVPLNQAASVKVEDARTLSVIPFEKSMVPEVEKAIQSSDLGLTPTTAGTVIRIPMPPLTEDRRKELVKVVRSE 120
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_ACTSZ (Ribosome-recycling factor OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=frr PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 3.351e-22 Identity = 44/110 (40.00%), Postives = 82/110 (74.55%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660 D + RME++++ ++ + + +RTGR+ P++LD I+V+YYG+ L+ +A + D+ +L + +D+S ++++EKAI++SDLG+ P++ G IR+ LP LT ERR++L+K+V Sbjct: 8 DAQDRMEKSLEALKGHISKIRTGRAQPSLLDAIQVDYYGAATPLRQLANVVAEDARTLAVTVFDRSLIQAVEKAILTSDLGLNPSSAGTTIRVPLPPLTEERRRDLTKLV 117
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_SHESW (Ribosome-recycling factor OS=Shewanella sp. (strain W3-18-1) GN=frr PE=3 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 4.376e-22 Identity = 47/110 (42.73%), Postives = 74/110 (67.27%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660 D + RM + +D + VRTGR++P++LD I+V YYG+ L +A + DS +L + +D+S+++++EKAI+SSDLG+ P + G +R+ LP LT ERRK+ KVV Sbjct: 8 DAQERMGKCVDATKNQMAKVRTGRAHPSLLDSIQVSYYGTMTPLNQVANVGVEDSRTLSVTVFDRSAIQAVEKAIMSSDLGLNPMSAGATLRIPLPALTEERRKDFIKVV 117 The following BLAST results are available for this feature:
BLAST of CK939527 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CK939527 ID=CK939527; Name=CK939527; organism=Citrus sinensis; type=EST; length=671bpback to top |