CK939527

Overview
NameCK939527
Unique NameCK939527
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length671
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_SALPK (Ribosome-recycling factor OS=Salmonella paratyphi A (strain AKU_12601) GN=frr PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.465e-22
Identity = 49/110 (44.55%), Postives = 77/110 (70.00%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660
            D + RME+ ++  +T  + VRTGR++P++LD I VEYYG+   L+ +A +   DS +L I  +D+S   ++EKAI++SDLG+ P++ G  I + LP LT ERRK+L+K+V
Sbjct:    8 DAEVRMEKCVEAFKTQISKVRTGRASPSLLDGIVVEYYGTLTPLRQLASVTVEDSRTLKINVFDRSMGPAVEKAIMASDLGLNPSSAGTDICVPLPPLTEERRKDLTKIV 117          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_SALPA (Ribosome-recycling factor OS=Salmonella paratyphi A GN=frr PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.465e-22
Identity = 49/110 (44.55%), Postives = 77/110 (70.00%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660
            D + RME+ ++  +T  + VRTGR++P++LD I VEYYG+   L+ +A +   DS +L I  +D+S   ++EKAI++SDLG+ P++ G  I + LP LT ERRK+L+K+V
Sbjct:    8 DAEVRMEKCVEAFKTQISKVRTGRASPSLLDGIVVEYYGTLTPLRQLASVTVEDSRTLKINVFDRSMGPAVEKAIMASDLGLNPSSAGTDICVPLPPLTEERRKDLTKIV 117          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_PHOPR (Ribosome-recycling factor OS=Photobacterium profundum GN=frr PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.465e-22
Identity = 50/113 (44.25%), Postives = 75/113 (66.37%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669
            D + RM +++D ++     +RTGR++P++LD I VEYYG+   LK +A +   DS +L I  +D+     IEKAI+ SDLG+ P + G VIR+ LP LT ERR++L K+V K+
Sbjct:    8 DAQERMGKSVDALKNQLVKIRTGRAHPSLLDTIYVEYYGANTPLKQLANVVAEDSRTLAITVFDRELTPKIEKAIMMSDLGLNPMSAGTVIRVPLPPLTEERRRDLVKIVRKE 120          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_NOVAD (Ribosome-recycling factor OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=frr PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.465e-22
Identity = 49/112 (43.75%), Postives = 78/112 (69.64%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666
            D++ RM+  ++ +R + + +RTGR+N A+LD I VE YGS + L  +A ++ P+   L +Q +DKS++  +EKAI S+ LG+ P +DG  +RL +P LT ERRKEL+K+ +K
Sbjct:    8 DLERRMKGAVESLRGDLSGLRTGRANTALLDPIVVEVYGSHMPLAQVATVSAPEPRLLSVQVWDKSNVTPVEKAIRSAGLGLNPISDGNTLRLPIPDLTEERRKELAKLASK 119          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_GRAFK (Ribosome-recycling factor OS=Gramella forsetii (strain KT0803) GN=frr PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.465e-22
Identity = 46/108 (42.59%), Postives = 75/108 (69.44%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSK 654
            + K  ME+ I  ++   +++R G+++P+ML  + VEYYGS   L+ +A +NTPD+ +L IQP++KS +  IE+ I+ ++LG  P N+GE + + +P LT ERRK+LSK
Sbjct:   10 EAKEGMEKAITHLKKQLSNIRAGKASPSMLGSVMVEYYGSQTPLQQVANVNTPDARTLSIQPFEKSLITEIERGIMLANLGFNPMNNGESVIINVPPLTEERRKQLSK 117          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_TREDE (Ribosome-recycling factor OS=Treponema denticola GN=frr PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 9.749e-22
Identity = 46/104 (44.23%), Postives = 73/104 (70.19%), Query Frame = 1
Query:  343 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSK 654
            +M++T+  ++  FN +RTGR++ A+ DKI V  YG    L  +A I+ P++  ++IQP+DK  L  IEKA++ +DL + P NDG+VIR+ +P LT +RRK+L+K
Sbjct:   12 KMKKTVVALKEEFNMLRTGRASSALFDKIRVNCYGESTPLNQLANISIPEARLVVIQPWDKGLLVEIEKAVLQADLSVNPTNDGKVIRIAIPPLTEDRRKDLAK 115          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_THEAB (Ribosome-recycling factor OS=Thermosipho africanus (strain TCF52B) GN=frr PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 9.749e-22
Identity = 44/108 (40.74%), Postives = 76/108 (70.37%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSK 654
            + + RM+++++ +      +RTGR +PA+L++I+++YYG P  +  +A IN  +  SL+I+P++K+ L +IEKAI +SDLG+ P NDG V+RL  P  T+E+R++  K
Sbjct:    8 EAELRMKKSVEAIDEELKKLRTGRPSPALLEEIKIDYYGVPTPINQVATINVTEERSLIIKPWEKNLLSAIEKAIQASDLGLNPTNDGNVVRLVFPSPTTEQRQKWVK 115          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_SORC5 (Ribosome-recycling factor OS=Sorangium cellulosum (strain So ce56) GN=frr PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 9.749e-22
Identity = 47/112 (41.96%), Postives = 77/112 (68.75%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666
            +++  +E+ I+ +R +   VRTGR+N AMLD I V+YYG P  +  +A ++ P+   + ++P++K+ +K+IEKAI  SDLG+ P  D ++IRL +P LT ERR+E+ K+  K
Sbjct:    8 ELREGIEKAIEALRRDLAKVRTGRANAAMLDGIRVDYYGVPTPIVQMATVSVPEPRLISVKPWEKNQVKAIEKAIRESDLGLNPQVDADLIRLPIPPLTEERRREMVKLTKK 119          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_SHEON (Ribosome-recycling factor OS=Shewanella oneidensis GN=frr PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 9.749e-22
Identity = 46/110 (41.82%), Postives = 74/110 (67.27%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660
            D + RM + +D  +     VRTGR++P++LD I+V YYG+   L  +A +   D+ +L +  +D+S+++++EKAI+SSDLG+ P + G  +R+ LP LT ERRK+  KVV
Sbjct:    8 DAQERMGKCVDATKNQMAKVRTGRAHPSLLDSIQVSYYGTMTPLNQVANVGVEDARTLSVTVFDRSAIQAVEKAIMSSDLGLNPMSAGATLRIPLPALTEERRKDFIKVV 117          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_PELCD (Ribosome-recycling factor OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=frr PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 9.749e-22
Identity = 44/110 (40.00%), Postives = 74/110 (67.27%), Query Frame = 1
Query:  337 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666
            ++ M++ ++ ++ +   VRTGR++ ++LD + V+YYG+P  L  +  +  P+   + IQP++K  L  IE+AI  +DLG+ P +DG +IRL +P +T ERRKE+ KVV K
Sbjct:   10 RSGMDKAVESLKKDMTKVRTGRASTSLLDDVMVDYYGTPTPLNQVGTLAVPEPRLITIQPWEKKLLADIERAIFKADLGLNPTSDGNLIRLVIPPMTEERRKEMGKVVRK 119          
The following BLAST results are available for this feature:
BLAST of CK939527 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_SALPK7.465e-2244.55Ribosome-recycling factor OS=Salmonella paratyphi ... [more]
RRF_SALPA7.465e-2244.55Ribosome-recycling factor OS=Salmonella paratyphi ... [more]
RRF_PHOPR7.465e-2244.25Ribosome-recycling factor OS=Photobacterium profun... [more]
RRF_NOVAD7.465e-2243.75Ribosome-recycling factor OS=Novosphingobium aroma... [more]
RRF_GRAFK7.465e-2242.59Ribosome-recycling factor OS=Gramella forsetii (st... [more]
RRF_TREDE9.749e-2244.23Ribosome-recycling factor OS=Treponema denticola G... [more]
RRF_THEAB9.749e-2240.74Ribosome-recycling factor OS=Thermosipho africanus... [more]
RRF_SORC59.749e-2241.96Ribosome-recycling factor OS=Sorangium cellulosum ... [more]
RRF_SHEON9.749e-2241.82Ribosome-recycling factor OS=Shewanella oneidensis... [more]
RRF_PELCD9.749e-2240.00Ribosome-recycling factor OS=Pelobacter carbinolic... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004749_D04 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IF_D04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939527 ID=CK939527; Name=CK939527; organism=Citrus sinensis; type=EST; length=671bp
GCGGGGAACTANNNTCTTAAGTCTGAGCGAGCGTTCATGGCCACGCACTT
TTCTTCAACAGGGCCCATGCGGTCCATTTTCCAACTGAAATCAAATCCTC
CCAAATGCCTCCTTTTCCTCCCTGATTCTTGTCATAGAAGAGCCGAAACT
GCCACGTGCCGTGCTAGCAGCGTTAGTGTGCGCCAGTGGAGCTCAGCTGC
AAACTACTCTAGACTTGTGAAATTATCCAACAAACCTATCGTTGTAAGAC
AACTGGCACACAAGAGAAATGGAGTTGTGAGGTGTGCAACTATTGAAGAA
ATTGAAGCGGAAAAATCTTCCATTGAGAAGGATGTTAAAGCTAGGATGGA
AAGGACTATCGATATGGTCCGAACCAATTTCAATTCCGTGAGGACAGGAA
GATCGAATCCAGCTATGCTAGATAAGATTGAGGTGGAATACTATGGAAGC
CCAGTAAGTTTGAAGAGCATAGCTCAAATCAATACCCCTGATTCAAGTTC
TCTATTGATTCAACCATATGACAAATCCAGCTTAAAGTCTATAGAGAAGG
CCATAGTAAGCTCTGATCTTGGCATGACCCCAAACAATGATGGTGAAGTC
ATACGGTTAACCCTTCCTCAATTGACATCCGAAAGGAGGAAGGAACTGTC
AAAGGTTGTGGCCAAACAGGC
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