CK939527
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_SALPK (Ribosome-recycling factor OS=Salmonella paratyphi A (strain AKU_12601) GN=frr PE=3 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 7.465e-22 Identity = 49/110 (44.55%), Postives = 77/110 (70.00%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660 D + RME+ ++ +T + VRTGR++P++LD I VEYYG+ L+ +A + DS +L I +D+S ++EKAI++SDLG+ P++ G I + LP LT ERRK+L+K+V Sbjct: 8 DAEVRMEKCVEAFKTQISKVRTGRASPSLLDGIVVEYYGTLTPLRQLASVTVEDSRTLKINVFDRSMGPAVEKAIMASDLGLNPSSAGTDICVPLPPLTEERRKDLTKIV 117
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_SALPA (Ribosome-recycling factor OS=Salmonella paratyphi A GN=frr PE=3 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 7.465e-22 Identity = 49/110 (44.55%), Postives = 77/110 (70.00%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660 D + RME+ ++ +T + VRTGR++P++LD I VEYYG+ L+ +A + DS +L I +D+S ++EKAI++SDLG+ P++ G I + LP LT ERRK+L+K+V Sbjct: 8 DAEVRMEKCVEAFKTQISKVRTGRASPSLLDGIVVEYYGTLTPLRQLASVTVEDSRTLKINVFDRSMGPAVEKAIMASDLGLNPSSAGTDICVPLPPLTEERRKDLTKIV 117
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_PHOPR (Ribosome-recycling factor OS=Photobacterium profundum GN=frr PE=3 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 7.465e-22 Identity = 50/113 (44.25%), Postives = 75/113 (66.37%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669 D + RM +++D ++ +RTGR++P++LD I VEYYG+ LK +A + DS +L I +D+ IEKAI+ SDLG+ P + G VIR+ LP LT ERR++L K+V K+ Sbjct: 8 DAQERMGKSVDALKNQLVKIRTGRAHPSLLDTIYVEYYGANTPLKQLANVVAEDSRTLAITVFDRELTPKIEKAIMMSDLGLNPMSAGTVIRVPLPPLTEERRRDLVKIVRKE 120
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_NOVAD (Ribosome-recycling factor OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=frr PE=3 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 7.465e-22 Identity = 49/112 (43.75%), Postives = 78/112 (69.64%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666 D++ RM+ ++ +R + + +RTGR+N A+LD I VE YGS + L +A ++ P+ L +Q +DKS++ +EKAI S+ LG+ P +DG +RL +P LT ERRKEL+K+ +K Sbjct: 8 DLERRMKGAVESLRGDLSGLRTGRANTALLDPIVVEVYGSHMPLAQVATVSAPEPRLLSVQVWDKSNVTPVEKAIRSAGLGLNPISDGNTLRLPIPDLTEERRKELAKLASK 119
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_GRAFK (Ribosome-recycling factor OS=Gramella forsetii (strain KT0803) GN=frr PE=3 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 7.465e-22 Identity = 46/108 (42.59%), Postives = 75/108 (69.44%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSK 654 + K ME+ I ++ +++R G+++P+ML + VEYYGS L+ +A +NTPD+ +L IQP++KS + IE+ I+ ++LG P N+GE + + +P LT ERRK+LSK Sbjct: 10 EAKEGMEKAITHLKKQLSNIRAGKASPSMLGSVMVEYYGSQTPLQQVANVNTPDARTLSIQPFEKSLITEIERGIMLANLGFNPMNNGESVIINVPPLTEERRKQLSK 117
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_TREDE (Ribosome-recycling factor OS=Treponema denticola GN=frr PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 9.749e-22 Identity = 46/104 (44.23%), Postives = 73/104 (70.19%), Query Frame = 1 Query: 343 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSK 654 +M++T+ ++ FN +RTGR++ A+ DKI V YG L +A I+ P++ ++IQP+DK L IEKA++ +DL + P NDG+VIR+ +P LT +RRK+L+K Sbjct: 12 KMKKTVVALKEEFNMLRTGRASSALFDKIRVNCYGESTPLNQLANISIPEARLVVIQPWDKGLLVEIEKAVLQADLSVNPTNDGKVIRIAIPPLTEDRRKDLAK 115
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_THEAB (Ribosome-recycling factor OS=Thermosipho africanus (strain TCF52B) GN=frr PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 9.749e-22 Identity = 44/108 (40.74%), Postives = 76/108 (70.37%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSK 654 + + RM+++++ + +RTGR +PA+L++I+++YYG P + +A IN + SL+I+P++K+ L +IEKAI +SDLG+ P NDG V+RL P T+E+R++ K Sbjct: 8 EAELRMKKSVEAIDEELKKLRTGRPSPALLEEIKIDYYGVPTPINQVATINVTEERSLIIKPWEKNLLSAIEKAIQASDLGLNPTNDGNVVRLVFPSPTTEQRQKWVK 115
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_SORC5 (Ribosome-recycling factor OS=Sorangium cellulosum (strain So ce56) GN=frr PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 9.749e-22 Identity = 47/112 (41.96%), Postives = 77/112 (68.75%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666 +++ +E+ I+ +R + VRTGR+N AMLD I V+YYG P + +A ++ P+ + ++P++K+ +K+IEKAI SDLG+ P D ++IRL +P LT ERR+E+ K+ K Sbjct: 8 ELREGIEKAIEALRRDLAKVRTGRANAAMLDGIRVDYYGVPTPIVQMATVSVPEPRLISVKPWEKNQVKAIEKAIRESDLGLNPQVDADLIRLPIPPLTEERRREMVKLTKK 119
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_SHEON (Ribosome-recycling factor OS=Shewanella oneidensis GN=frr PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 9.749e-22 Identity = 46/110 (41.82%), Postives = 74/110 (67.27%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660 D + RM + +D + VRTGR++P++LD I+V YYG+ L +A + D+ +L + +D+S+++++EKAI+SSDLG+ P + G +R+ LP LT ERRK+ KVV Sbjct: 8 DAQERMGKCVDATKNQMAKVRTGRAHPSLLDSIQVSYYGTMTPLNQVANVGVEDARTLSVTVFDRSAIQAVEKAIMSSDLGLNPMSAGATLRIPLPALTEERRKDFIKVV 117
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_PELCD (Ribosome-recycling factor OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=frr PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 9.749e-22 Identity = 44/110 (40.00%), Postives = 74/110 (67.27%), Query Frame = 1 Query: 337 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666 ++ M++ ++ ++ + VRTGR++ ++LD + V+YYG+P L + + P+ + IQP++K L IE+AI +DLG+ P +DG +IRL +P +T ERRKE+ KVV K Sbjct: 10 RSGMDKAVESLKKDMTKVRTGRASTSLLDDVMVDYYGTPTPLNQVGTLAVPEPRLITIQPWEKKLLADIERAIFKADLGLNPTSDGNLIRLVIPPMTEERRKEMGKVVRK 119 The following BLAST results are available for this feature:
BLAST of CK939527 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CK939527 ID=CK939527; Name=CK939527; organism=Citrus sinensis; type=EST; length=671bpback to top |