CK939527
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_BORHD (Ribosome-recycling factor OS=Borrelia hermsii (strain DAH) GN=frr PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 9.749e-22 Identity = 49/108 (45.37%), Postives = 75/108 (69.44%), Query Frame = 1 Query: 343 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666 +M+R + + + + S+RTGR + A+ DK+ V+YYG L +A I+ P++ ++IQP+DKS L IE+AI+SSDL M P++DG V+R+ +P LT ERRKE+ K K Sbjct: 11 KMDRVLLSLDSEYKSLRTGRISSALFDKVLVDYYGEKTPLTRVANISIPEARLIVIQPWDKSLLSKIEQAILSSDLSMNPSSDGSVLRIKVPVLTVERRKEIVKQAKK 118
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_VIBFM (Ribosome-recycling factor OS=Vibrio fischeri (strain MJ11) GN=frr PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.273e-21 Identity = 50/110 (45.45%), Postives = 73/110 (66.36%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660 D + RME++++ ++ N VRTGR++P++L I VEYYG+ L +A + DS +L I +DK +EKAI+ SDLG+ P + G VIR+ LP LT ERRK+L K+V Sbjct: 8 DAQERMEKSVEALKNNLLKVRTGRAHPSLLSGISVEYYGAKTPLNQVANVVAEDSRTLAITVFDKELAGLVEKAIMMSDLGLNPMSAGTVIRVPLPPLTEERRKDLVKIV 117
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_SHEDO (Ribosome-recycling factor OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=frr PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.273e-21 Identity = 47/113 (41.59%), Postives = 74/113 (65.49%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669 D + RM + +D + VRTGR++P++LD I+V YYG+ LK +A + DS +L + +D+S ++++EKAI++SDLG+ P G +R+ LP LT ERRK+ KVV + Sbjct: 8 DAQERMGKCVDATKNQMAKVRTGRAHPSLLDSIQVSYYGAMSPLKQVANVGIEDSRTLSVTVFDRSMVQAVEKAIMTSDLGLNPMTAGATLRIPLPALTEERRKDFIKVVRNE 120
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_RALSO (Ribosome-recycling factor OS=Ralstonia solanacearum GN=frr PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.273e-21 Identity = 45/109 (41.28%), Postives = 76/109 (69.72%), Query Frame = 1 Query: 343 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669 +M+++ID + + VRTGR++ +LD ++V+YYGS V + +A + D+ ++ +QP++K + ++E+AI +DLG+ P GEVIR+ +P LT ERRKEL+KVV + Sbjct: 13 KMQKSIDAFKADLAKVRTGRAHTGLLDHVQVDYYGSMVPISQVANLGLADARTISVQPWEKKMVSAVERAIRDADLGLNPATMGEVIRVPMPPLTEERRKELTKVVKSE 121
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_PARD8 (Ribosome-recycling factor OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=frr PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.273e-21 Identity = 45/104 (43.27%), Postives = 74/104 (71.15%), Query Frame = 1 Query: 343 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSK 654 +M I+ + + +R G++NP +LD ++V YYG+PV L ++A + PD+ +++I P++K ++ IEK I+ S+LG+TP N+GEVIRL +P LT ERR++L K Sbjct: 14 KMTFAIEYLDEQLSHIRAGKANPKILDCVKVMYYGAPVPLTNVATVTVPDARTIMITPWEKKIIRDIEKGILDSELGITPENNGEVIRLGIPPLTEERRRQLVK 117
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_DESAH (Ribosome-recycling factor OS=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) GN=frr PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.273e-21 Identity = 43/110 (39.09%), Postives = 78/110 (70.91%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660 + + RM +++ + VRTGR++ MLD ++V+YYG+ L +A I P+S + +QP+D S++K +EK I+ +++G+TP++DG++IR+T+P LT +RR+E++K V Sbjct: 8 ETRDRMVKSVKTLEKEMTRVRTGRASMTMLDGVKVDYYGTLTPLNQMASIAIPESRMITVQPWDISAIKEVEKGILKANIGLTPSSDGKIIRITIPPLTEDRRREIAKTV 117
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_BORRA (Ribosome-recycling factor OS=Borrelia recurrentis (strain A1) GN=frr PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.273e-21 Identity = 48/108 (44.44%), Postives = 74/108 (68.52%), Query Frame = 1 Query: 343 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666 +M R + + + + S+RTGR N A+ DK+ V+YYG L +A I+ P++ ++IQP+D+S L IE+AI++SDL M P++DG V+R+ +P LT ERRKE+ K K Sbjct: 11 KMGRVVLSLESEYKSLRTGRVNSALFDKVFVDYYGEKTPLTRVANISVPEARLIVIQPWDRSLLSKIEQAILNSDLSMNPSSDGSVLRIKVPVLTIERRKEIVKQAKK 118
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_BORDL (Ribosome-recycling factor OS=Borrelia duttonii (strain Ly) GN=frr PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.273e-21 Identity = 48/108 (44.44%), Postives = 74/108 (68.52%), Query Frame = 1 Query: 343 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666 +M R + + + + S+RTGR N A+ DK+ V+YYG L +A I+ P++ ++IQP+D+S L IE+AI++SDL M P++DG V+R+ +P LT ERRKE+ K K Sbjct: 11 KMGRVVLSLESEYKSLRTGRVNSALFDKVFVDYYGEKTPLTRVANISVPEARLIVIQPWDRSLLSKIEQAILNSDLSMNPSSDGSVLRIKVPVLTIERRKEIVKQAKK 118
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_ANADE (Ribosome-recycling factor OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=frr PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.273e-21 Identity = 44/110 (40.00%), Postives = 80/110 (72.73%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660 D+ R+ +T+D +RT+ ++VRTGR++ +LD + V+YYG+P L +A ++ P++ ++++P++KS + IEKAI ++LG+ P +D +++R+ +P LT ERRKE+ K V Sbjct: 11 DLHGRILKTLDQLRTDLSAVRTGRASLHLLDNVRVDYYGTPTPLNQVATMSVPEARLIVVKPWEKSMIPPIEKAIREANLGLNPMSDKDLVRVPIPALTEERRKEIVKQV 120
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_VIBF1 (Ribosome-recycling factor OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=frr PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.663e-21 Identity = 49/110 (44.55%), Postives = 73/110 (66.36%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660 D + RME++++ ++ N +RTGR++P++L I VEYYG+ L +A + DS +L I +DK +EKAI+ SDLG+ P + G VIR+ LP LT ERRK+L K+V Sbjct: 8 DAQERMEKSVEALKNNLLKIRTGRAHPSLLSGISVEYYGAQTPLNQVANVVAEDSRTLAITVFDKELAGLVEKAIMMSDLGLNPMSAGTVIRVPLPPLTEERRKDLVKIV 117 The following BLAST results are available for this feature:
BLAST of CK939527 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CK939527 ID=CK939527; Name=CK939527; organism=Citrus sinensis; type=EST; length=671bpback to top |