CK939527

Overview
NameCK939527
Unique NameCK939527
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length671
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_BORHD (Ribosome-recycling factor OS=Borrelia hermsii (strain DAH) GN=frr PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 9.749e-22
Identity = 49/108 (45.37%), Postives = 75/108 (69.44%), Query Frame = 1
Query:  343 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666
            +M+R +  + + + S+RTGR + A+ DK+ V+YYG    L  +A I+ P++  ++IQP+DKS L  IE+AI+SSDL M P++DG V+R+ +P LT ERRKE+ K   K
Sbjct:   11 KMDRVLLSLDSEYKSLRTGRISSALFDKVLVDYYGEKTPLTRVANISIPEARLIVIQPWDKSLLSKIEQAILSSDLSMNPSSDGSVLRIKVPVLTVERRKEIVKQAKK 118          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_VIBFM (Ribosome-recycling factor OS=Vibrio fischeri (strain MJ11) GN=frr PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.273e-21
Identity = 50/110 (45.45%), Postives = 73/110 (66.36%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660
            D + RME++++ ++ N   VRTGR++P++L  I VEYYG+   L  +A +   DS +L I  +DK     +EKAI+ SDLG+ P + G VIR+ LP LT ERRK+L K+V
Sbjct:    8 DAQERMEKSVEALKNNLLKVRTGRAHPSLLSGISVEYYGAKTPLNQVANVVAEDSRTLAITVFDKELAGLVEKAIMMSDLGLNPMSAGTVIRVPLPPLTEERRKDLVKIV 117          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_SHEDO (Ribosome-recycling factor OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=frr PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.273e-21
Identity = 47/113 (41.59%), Postives = 74/113 (65.49%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669
            D + RM + +D  +     VRTGR++P++LD I+V YYG+   LK +A +   DS +L +  +D+S ++++EKAI++SDLG+ P   G  +R+ LP LT ERRK+  KVV  +
Sbjct:    8 DAQERMGKCVDATKNQMAKVRTGRAHPSLLDSIQVSYYGAMSPLKQVANVGIEDSRTLSVTVFDRSMVQAVEKAIMTSDLGLNPMTAGATLRIPLPALTEERRKDFIKVVRNE 120          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_RALSO (Ribosome-recycling factor OS=Ralstonia solanacearum GN=frr PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.273e-21
Identity = 45/109 (41.28%), Postives = 76/109 (69.72%), Query Frame = 1
Query:  343 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669
            +M+++ID  + +   VRTGR++  +LD ++V+YYGS V +  +A +   D+ ++ +QP++K  + ++E+AI  +DLG+ P   GEVIR+ +P LT ERRKEL+KVV  +
Sbjct:   13 KMQKSIDAFKADLAKVRTGRAHTGLLDHVQVDYYGSMVPISQVANLGLADARTISVQPWEKKMVSAVERAIRDADLGLNPATMGEVIRVPMPPLTEERRKELTKVVKSE 121          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_PARD8 (Ribosome-recycling factor OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=frr PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.273e-21
Identity = 45/104 (43.27%), Postives = 74/104 (71.15%), Query Frame = 1
Query:  343 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSK 654
            +M   I+ +    + +R G++NP +LD ++V YYG+PV L ++A +  PD+ +++I P++K  ++ IEK I+ S+LG+TP N+GEVIRL +P LT ERR++L K
Sbjct:   14 KMTFAIEYLDEQLSHIRAGKANPKILDCVKVMYYGAPVPLTNVATVTVPDARTIMITPWEKKIIRDIEKGILDSELGITPENNGEVIRLGIPPLTEERRRQLVK 117          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_DESAH (Ribosome-recycling factor OS=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) GN=frr PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.273e-21
Identity = 43/110 (39.09%), Postives = 78/110 (70.91%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660
            + + RM +++  +      VRTGR++  MLD ++V+YYG+   L  +A I  P+S  + +QP+D S++K +EK I+ +++G+TP++DG++IR+T+P LT +RR+E++K V
Sbjct:    8 ETRDRMVKSVKTLEKEMTRVRTGRASMTMLDGVKVDYYGTLTPLNQMASIAIPESRMITVQPWDISAIKEVEKGILKANIGLTPSSDGKIIRITIPPLTEDRRREIAKTV 117          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_BORRA (Ribosome-recycling factor OS=Borrelia recurrentis (strain A1) GN=frr PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.273e-21
Identity = 48/108 (44.44%), Postives = 74/108 (68.52%), Query Frame = 1
Query:  343 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666
            +M R +  + + + S+RTGR N A+ DK+ V+YYG    L  +A I+ P++  ++IQP+D+S L  IE+AI++SDL M P++DG V+R+ +P LT ERRKE+ K   K
Sbjct:   11 KMGRVVLSLESEYKSLRTGRVNSALFDKVFVDYYGEKTPLTRVANISVPEARLIVIQPWDRSLLSKIEQAILNSDLSMNPSSDGSVLRIKVPVLTIERRKEIVKQAKK 118          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_BORDL (Ribosome-recycling factor OS=Borrelia duttonii (strain Ly) GN=frr PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.273e-21
Identity = 48/108 (44.44%), Postives = 74/108 (68.52%), Query Frame = 1
Query:  343 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666
            +M R +  + + + S+RTGR N A+ DK+ V+YYG    L  +A I+ P++  ++IQP+D+S L  IE+AI++SDL M P++DG V+R+ +P LT ERRKE+ K   K
Sbjct:   11 KMGRVVLSLESEYKSLRTGRVNSALFDKVFVDYYGEKTPLTRVANISVPEARLIVIQPWDRSLLSKIEQAILNSDLSMNPSSDGSVLRIKVPVLTIERRKEIVKQAKK 118          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_ANADE (Ribosome-recycling factor OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=frr PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.273e-21
Identity = 44/110 (40.00%), Postives = 80/110 (72.73%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660
            D+  R+ +T+D +RT+ ++VRTGR++  +LD + V+YYG+P  L  +A ++ P++  ++++P++KS +  IEKAI  ++LG+ P +D +++R+ +P LT ERRKE+ K V
Sbjct:   11 DLHGRILKTLDQLRTDLSAVRTGRASLHLLDNVRVDYYGTPTPLNQVATMSVPEARLIVVKPWEKSMIPPIEKAIREANLGLNPMSDKDLVRVPIPALTEERRKEIVKQV 120          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_VIBF1 (Ribosome-recycling factor OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=frr PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.663e-21
Identity = 49/110 (44.55%), Postives = 73/110 (66.36%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660
            D + RME++++ ++ N   +RTGR++P++L  I VEYYG+   L  +A +   DS +L I  +DK     +EKAI+ SDLG+ P + G VIR+ LP LT ERRK+L K+V
Sbjct:    8 DAQERMEKSVEALKNNLLKIRTGRAHPSLLSGISVEYYGAQTPLNQVANVVAEDSRTLAITVFDKELAGLVEKAIMMSDLGLNPMSAGTVIRVPLPPLTEERRKDLVKIV 117          
The following BLAST results are available for this feature:
BLAST of CK939527 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_BORHD9.749e-2245.37Ribosome-recycling factor OS=Borrelia hermsii (str... [more]
RRF_VIBFM1.273e-2145.45Ribosome-recycling factor OS=Vibrio fischeri (stra... [more]
RRF_SHEDO1.273e-2141.59Ribosome-recycling factor OS=Shewanella denitrific... [more]
RRF_RALSO1.273e-2141.28Ribosome-recycling factor OS=Ralstonia solanacearu... [more]
RRF_PARD81.273e-2143.27Ribosome-recycling factor OS=Parabacteroides dista... [more]
RRF_DESAH1.273e-2139.09Ribosome-recycling factor OS=Desulfobacterium auto... [more]
RRF_BORRA1.273e-2144.44Ribosome-recycling factor OS=Borrelia recurrentis ... [more]
RRF_BORDL1.273e-2144.44Ribosome-recycling factor OS=Borrelia duttonii (st... [more]
RRF_ANADE1.273e-2140.00Ribosome-recycling factor OS=Anaeromyxobacter deha... [more]
RRF_VIBF11.663e-2144.55Ribosome-recycling factor OS=Vibrio fischeri (stra... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004749_D04 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IF_D04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939527 ID=CK939527; Name=CK939527; organism=Citrus sinensis; type=EST; length=671bp
GCGGGGAACTANNNTCTTAAGTCTGAGCGAGCGTTCATGGCCACGCACTT
TTCTTCAACAGGGCCCATGCGGTCCATTTTCCAACTGAAATCAAATCCTC
CCAAATGCCTCCTTTTCCTCCCTGATTCTTGTCATAGAAGAGCCGAAACT
GCCACGTGCCGTGCTAGCAGCGTTAGTGTGCGCCAGTGGAGCTCAGCTGC
AAACTACTCTAGACTTGTGAAATTATCCAACAAACCTATCGTTGTAAGAC
AACTGGCACACAAGAGAAATGGAGTTGTGAGGTGTGCAACTATTGAAGAA
ATTGAAGCGGAAAAATCTTCCATTGAGAAGGATGTTAAAGCTAGGATGGA
AAGGACTATCGATATGGTCCGAACCAATTTCAATTCCGTGAGGACAGGAA
GATCGAATCCAGCTATGCTAGATAAGATTGAGGTGGAATACTATGGAAGC
CCAGTAAGTTTGAAGAGCATAGCTCAAATCAATACCCCTGATTCAAGTTC
TCTATTGATTCAACCATATGACAAATCCAGCTTAAAGTCTATAGAGAAGG
CCATAGTAAGCTCTGATCTTGGCATGACCCCAAACAATGATGGTGAAGTC
ATACGGTTAACCCTTCCTCAATTGACATCCGAAAGGAGGAAGGAACTGTC
AAAGGTTGTGGCCAAACAGGC
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