CK939527

Overview
NameCK939527
Unique NameCK939527
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length671
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_TREPS (Ribosome-recycling factor OS=Treponema pallidum subsp. pallidum (strain SS14) GN=frr PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.663e-21
Identity = 45/102 (44.12%), Postives = 74/102 (72.55%), Query Frame = 1
Query:  343 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKEL 648
            +M++++  ++  FN++RT R+   +LD+I V+YY  P +L  +A ++ P++  ++IQP+DK+ L  IE+AI+ S L + P+NDG+VIRL +P LT ERRKEL
Sbjct:   10 KMKKSLSALQEGFNTLRTERATAHLLDQITVDYYQQPTALSQVATVSVPEARLIIIQPWDKTLLADIERAILKSKLSLNPSNDGKVIRLVIPPLTQERRKEL 111          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_TREPA (Ribosome-recycling factor OS=Treponema pallidum GN=frr PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.663e-21
Identity = 45/102 (44.12%), Postives = 74/102 (72.55%), Query Frame = 1
Query:  343 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKEL 648
            +M++++  ++  FN++RT R+   +LD+I V+YY  P +L  +A ++ P++  ++IQP+DK+ L  IE+AI+ S L + P+NDG+VIRL +P LT ERRKEL
Sbjct:   10 KMKKSLSALQEGFNTLRTERATAHLLDQITVDYYQQPTALSQVATVSVPEARLIIIQPWDKTLLADIERAILKSKLSLNPSNDGKVIRLVIPPLTQERRKEL 111          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_RALEJ (Ribosome-recycling factor OS=Ralstonia eutropha (strain JMP134) GN=frr PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.663e-21
Identity = 47/109 (43.12%), Postives = 76/109 (69.72%), Query Frame = 1
Query:  334 VKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660
            V+ +M+++I+  + +   VRTGR++  +LD ++V+YYGS V +  +A I   D+ ++ +QP++K  + ++EKAI   DLG+ P   GEVIR+ +P LT ERRKEL+KVV
Sbjct:   10 VEQKMQKSIEAFKADLAKVRTGRAHVGLLDHVQVDYYGSMVPISQVANIGLGDARTITVQPWEKKMVGAVEKAIRDCDLGLNPATMGEVIRVPMPPLTEERRKELTKVV 118          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_ACIAC (Ribosome-recycling factor OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=frr PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.663e-21
Identity = 45/113 (39.82%), Postives = 79/113 (69.91%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669
            + +A+M+++I   + N   +RTGR+NPA+LD ++VEYYGS V L  +A ++  D+ ++ +QP++K     IEKAI  S+LG+ P + G++IR+ +P ++ ERRKE++K+   +
Sbjct:    9 NTEAKMDQSIVAFKNNLAKIRTGRANPALLDSVQVEYYGSMVPLSQVANVSLIDARTISVQPWEKGMGAKIEKAIRESELGLNPASMGDLIRVPMPPMSEERRKEMTKLARNE 121          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_RALEH (Ribosome-recycling factor OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=frr PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.172e-21
Identity = 45/109 (41.28%), Postives = 76/109 (69.72%), Query Frame = 1
Query:  334 VKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660
            V+ +M+++I+  + +   +RTGR++  +LD ++V+YYGS V +  +A +   D+ ++ +QP++K  + ++EKAI   DLG+ P   GEVIR+ +P LT ERRKEL+KVV
Sbjct:   10 VEQKMQKSIEAFKADLAKIRTGRAHTGLLDHVQVDYYGSMVPISQVAAVGLADARTITVQPWEKKMVGAVEKAIRDCDLGLNPATMGEVIRVPMPALTEERRKELTKVV 118          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_PSYA2 (Ribosome-recycling factor OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=frr PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.172e-21
Identity = 46/109 (42.20%), Postives = 77/109 (70.64%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKV 657
            D +ARM++T++ + + F+ VRTGR++P ML  + V YYGS   L  +A +N  DS +LL+QP+D++ +++I+KAI  +DLG+ P    +VIR+ +P LT E R+++ K+
Sbjct:    8 DGEARMQKTLEALESTFSKVRTGRAHPGMLSGVMVSYYGSDTPLNQVASVNVEDSRTLLVQPFDRTMVQAIDKAIREADLGLNPMT-ADVIRVPMPALTEETRRDMQKL 115          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_POLSJ (Ribosome-recycling factor OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=frr PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.172e-21
Identity = 44/110 (40.00%), Postives = 75/110 (68.18%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660
            + + +M++++D  + +   +RTGR+NP +LD + V+YYGS V +  +A ++  D+ ++ + P++K     IEKAI  SDLG+ P   G++IR+ +P +T ERRKEL+KVV
Sbjct:    9 NAEQKMQQSVDSFKNSLTKIRTGRANPGLLDTVHVDYYGSMVPISQVANVSLLDARTISVSPWEKGMGAKIEKAIRDSDLGLNPAAQGDLIRVPMPAMTEERRKELTKVV 118          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_METPP (Ribosome-recycling factor OS=Methylibium petroleiphilum (strain PM1) GN=frr PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.172e-21
Identity = 47/114 (41.23%), Postives = 78/114 (68.42%), Query Frame = 1
Query:  331 DVKARME----RTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660
            D+K   E    R+I+  ++    +RTGR++P +LD++ VEYYGS VS+  +A ++  D+ ++ +QP++K     IEKAI  SDLG+ P++ GE++R+ +P L  ERR++L+KVV
Sbjct:    5 DIKKTFEQKSARSIESFKSELQKIRTGRAHPGILDQVHVEYYGSMVSISQVANVSLLDARTISVQPWEKGMGPKIEKAIRESDLGLNPSSQGELLRVPMPALNEERRRDLTKVV 118          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_ERYLH (Ribosome-recycling factor OS=Erythrobacter litoralis (strain HTCC2594) GN=frr PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.172e-21
Identity = 42/112 (37.50%), Postives = 77/112 (68.75%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666
            D++ RM   ++ ++++ + +RTGR+N ++LD + VE YG+ + L  +A +N P+   L +Q +DK+++ ++EK I  ++LG+ P  DG+ +RL +P LT ERRKEL+K+  +
Sbjct:    8 DIERRMAGAVESLKSDLSGLRTGRANTSLLDPVVVEVYGAMMPLNQVATVNAPEPRMLAVQVWDKANVSAVEKGITKANLGLNPMTDGQTVRLPMPDLTEERRKELAKLAGQ 119          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_BORT9 (Ribosome-recycling factor OS=Borrelia turicatae (strain 91E135) GN=frr PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.172e-21
Identity = 47/108 (43.52%), Postives = 74/108 (68.52%), Query Frame = 1
Query:  343 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666
            +M + +  + + + S+RTGR N ++ DK+ V+YYG    L  +A ++ P++  ++IQP+DKS L  IE+AI+SSDL M P++DG V+R+ +P LT ERRKE+ K   K
Sbjct:   11 KMSKVLLSLESEYKSLRTGRINSSLFDKVLVDYYGEKTPLTRVANVSIPEARLIVIQPWDKSLLSKIEQAILSSDLSMNPSSDGAVLRIKVPVLTVERRKEIVKQAKK 118          
The following BLAST results are available for this feature:
BLAST of CK939527 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_TREPS1.663e-2144.12Ribosome-recycling factor OS=Treponema pallidum su... [more]
RRF_TREPA1.663e-2144.12Ribosome-recycling factor OS=Treponema pallidum GN... [more]
RRF_RALEJ1.663e-2143.12Ribosome-recycling factor OS=Ralstonia eutropha (s... [more]
RRF_ACIAC1.663e-2139.82Ribosome-recycling factor OS=Acidovorax avenae sub... [more]
RRF_RALEH2.172e-2141.28Ribosome-recycling factor OS=Ralstonia eutropha (s... [more]
RRF_PSYA22.172e-2142.20Ribosome-recycling factor OS=Psychrobacter arcticu... [more]
RRF_POLSJ2.172e-2140.00Ribosome-recycling factor OS=Polaromonas sp. (stra... [more]
RRF_METPP2.172e-2141.23Ribosome-recycling factor OS=Methylibium petroleip... [more]
RRF_ERYLH2.172e-2137.50Ribosome-recycling factor OS=Erythrobacter litoral... [more]
RRF_BORT92.172e-2143.52Ribosome-recycling factor OS=Borrelia turicatae (s... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004749_D04 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IF_D04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939527 ID=CK939527; Name=CK939527; organism=Citrus sinensis; type=EST; length=671bp
GCGGGGAACTANNNTCTTAAGTCTGAGCGAGCGTTCATGGCCACGCACTT
TTCTTCAACAGGGCCCATGCGGTCCATTTTCCAACTGAAATCAAATCCTC
CCAAATGCCTCCTTTTCCTCCCTGATTCTTGTCATAGAAGAGCCGAAACT
GCCACGTGCCGTGCTAGCAGCGTTAGTGTGCGCCAGTGGAGCTCAGCTGC
AAACTACTCTAGACTTGTGAAATTATCCAACAAACCTATCGTTGTAAGAC
AACTGGCACACAAGAGAAATGGAGTTGTGAGGTGTGCAACTATTGAAGAA
ATTGAAGCGGAAAAATCTTCCATTGAGAAGGATGTTAAAGCTAGGATGGA
AAGGACTATCGATATGGTCCGAACCAATTTCAATTCCGTGAGGACAGGAA
GATCGAATCCAGCTATGCTAGATAAGATTGAGGTGGAATACTATGGAAGC
CCAGTAAGTTTGAAGAGCATAGCTCAAATCAATACCCCTGATTCAAGTTC
TCTATTGATTCAACCATATGACAAATCCAGCTTAAAGTCTATAGAGAAGG
CCATAGTAAGCTCTGATCTTGGCATGACCCCAAACAATGATGGTGAAGTC
ATACGGTTAACCCTTCCTCAATTGACATCCGAAAGGAGGAAGGAACTGTC
AAAGGTTGTGGCCAAACAGGC
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