CK939527
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_VIBVY (Ribosome-recycling factor OS=Vibrio vulnificus (strain YJ016) GN=frr PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 2.837e-21 Identity = 47/110 (42.73%), Postives = 75/110 (68.18%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660 D + RME++++ ++ + + VRTGR++P++L I V+YYG+ L +A + D+ +L I +DK + +EKAI+ SDLG+ P + G VIR+ LP LT ERRK+L K+V Sbjct: 8 DAQERMEKSVEALKNSLSKVRTGRAHPSLLSGISVDYYGAATPLTQVANVIAEDARTLAITVFDKELTQKVEKAIMMSDLGLNPMSAGTVIRVPLPPLTEERRKDLVKIV 117
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_RALPJ (Ribosome-recycling factor OS=Ralstonia pickettii (strain 12J) GN=frr PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 2.837e-21 Identity = 43/110 (39.09%), Postives = 79/110 (71.82%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660 + + +M+++I+ ++T+ +RTGR++ +LD ++V+YYGS V + +A + D+ ++ +QP++K ++++EKAI +DLG+ P G++IR+ P LT ERRKEL+KVV Sbjct: 9 NAEQKMQKSIEALKTDLAKIRTGRAHTGLLDHVQVDYYGSMVPISQVANVTLVDARTIGVQPWEKKMVQAVEKAIREADLGLNPATMGDIIRVPTPALTEERRKELTKVV 118
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_RALME (Ribosome-recycling factor OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=frr PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 2.837e-21 Identity = 44/109 (40.37%), Postives = 78/109 (71.56%), Query Frame = 1 Query: 334 VKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660 V+ +M+++I+ + + VRTGR++ +LD ++V+YYGS V + +A ++ D+ ++ +QP++K ++++EKAI DLG+ P G+VIR+ +P LT ERR+EL+KVV Sbjct: 10 VEQKMQKSIEAFKADLAKVRTGRAHTGLLDHVQVDYYGSMVPISQVAAVSLADARTISVQPWEKKMVQAVEKAIRDGDLGLNPATMGDVIRVPMPPLTEERRRELTKVV 118
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_PHYAS (Ribosome-recycling factor OS=Phytoplasma australiense GN=frr PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 2.837e-21 Identity = 47/111 (42.34%), Postives = 77/111 (69.37%), Query Frame = 1 Query: 334 VKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666 ++ +M + +++ NF +RTG +NP +L+K+ + YYGS LK+++ I+ + + L I+PY+K+ + SI+KAI++SDLG+TP DG ++RL P+ T ERRK L K V K Sbjct: 12 IEKKMSQAQEVMLKNFLEIRTGYANPNILNKVNINYYGSQTPLKTLSSISVSEGTQLQIKPYEKTLIPSIKKAILASDLGITPETDGVLLRLNFPKPTEERRKVLVKEVDK 122
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_NITEC (Ribosome-recycling factor OS=Nitrosomonas eutropha (strain C91) GN=frr PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 2.837e-21 Identity = 42/106 (39.62%), Postives = 76/106 (71.70%), Query Frame = 1 Query: 343 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660 +M++++D ++ +F+ VR+GR + +LD I V+YYG+P ++ +A + D+ ++ + P+DK + +IEKAI SD+G+ P GE++R+ +P LT ERRK+L+K+V Sbjct: 12 KMQKSLDALKVDFSKVRSGRPHTGLLDHITVDYYGTPTPIRQLANVTLADARTIGVIPWDKKAFSAIEKAIRDSDMGLNPMTAGEMVRVPMPPLTEERRKDLTKIV 117
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_METFK (Ribosome-recycling factor OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=frr PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 2.837e-21 Identity = 43/109 (39.45%), Postives = 78/109 (71.56%), Query Frame = 1 Query: 343 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669 +M+++I+ ++ + + VRTGR++ +LD ++VEYYGS V++ +A ++ D+ +L +Q Y+K+ +EKAI +DLG+ P +G++IR+ +P LT ERR++L KVV + Sbjct: 12 KMQKSIEALKADLSKVRTGRAHTGLLDHVQVEYYGSMVAINQVASVSLGDARTLNVQAYEKNMTPKVEKAIRDADLGLNPATNGDIIRVPMPMLTEERRRDLVKVVRSE 120
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_CUPTR (Ribosome-recycling factor OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=frr PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 2.837e-21 Identity = 45/106 (42.45%), Postives = 74/106 (69.81%), Query Frame = 1 Query: 343 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660 +M+++I+ + + +RTGR++ +LD ++V+YYGS V + +A I D+ ++ +QP++K + ++EKAI DLG+ P GEVIR+ +P LT ERRKEL+KVV Sbjct: 13 KMQKSIEAFKADLAKIRTGRAHTGLLDHVQVDYYGSMVPISQVAAIGLADARTITVQPWEKKMVSAVEKAIRDCDLGLNPATMGEVIRVPMPALTEERRKELTKVV 118
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_BURS3 (Ribosome-recycling factor OS=Burkholderia sp. (strain 383) GN=frr PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 2.837e-21 Identity = 45/112 (40.18%), Postives = 77/112 (68.75%), Query Frame = 1 Query: 334 VKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669 V+ +M+R+ID +++ +RTGR++ MLD ++V+YYGS V + +A + D+ ++ +QP++K + +EKAI +DLG+ P G+ IR+ +P LT ERR+EL+KVV + Sbjct: 10 VEQKMQRSIDAFKSDLAKIRTGRAHTGMLDHVQVDYYGSMVPISQVANMTLVDARTIGVQPWEKPMVAKVEKAIREADLGLNPATSGDQIRVPMPALTEERRRELTKVVKSE 121
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_VIBCM (Ribosome-recycling factor OS=Vibrio cholerae serotype O1 (strain M66-2) GN=frr PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 3.705e-21 Identity = 44/110 (40.00%), Postives = 75/110 (68.18%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660 D + RME++++ ++ + +RTGR++P++L I V+YYG+P L +A + D+ +L I +D+ + +EKAI+ SDLG+ P + G +IR+ LP LT ERR++L K+V Sbjct: 8 DAQERMEKSVEALKNGLSKIRTGRAHPSLLTGISVDYYGAPTPLNQVANVIAEDARTLAITVFDRELTQKVEKAILMSDLGLNPMSAGTIIRVPLPPLTEERRRDLVKIV 117
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_VIBCH (Ribosome-recycling factor OS=Vibrio cholerae GN=frr PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 3.705e-21 Identity = 44/110 (40.00%), Postives = 75/110 (68.18%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660 D + RME++++ ++ + +RTGR++P++L I V+YYG+P L +A + D+ +L I +D+ + +EKAI+ SDLG+ P + G +IR+ LP LT ERR++L K+V Sbjct: 8 DAQERMEKSVEALKNGLSKIRTGRAHPSLLTGISVDYYGAPTPLNQVANVIAEDARTLAITVFDRELTQKVEKAILMSDLGLNPMSAGTIIRVPLPPLTEERRRDLVKIV 117 The following BLAST results are available for this feature:
BLAST of CK939527 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CK939527 ID=CK939527; Name=CK939527; organism=Citrus sinensis; type=EST; length=671bpback to top |