CK939527

Overview
NameCK939527
Unique NameCK939527
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length671
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_VIBVY (Ribosome-recycling factor OS=Vibrio vulnificus (strain YJ016) GN=frr PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.837e-21
Identity = 47/110 (42.73%), Postives = 75/110 (68.18%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660
            D + RME++++ ++ + + VRTGR++P++L  I V+YYG+   L  +A +   D+ +L I  +DK   + +EKAI+ SDLG+ P + G VIR+ LP LT ERRK+L K+V
Sbjct:    8 DAQERMEKSVEALKNSLSKVRTGRAHPSLLSGISVDYYGAATPLTQVANVIAEDARTLAITVFDKELTQKVEKAIMMSDLGLNPMSAGTVIRVPLPPLTEERRKDLVKIV 117          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_RALPJ (Ribosome-recycling factor OS=Ralstonia pickettii (strain 12J) GN=frr PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.837e-21
Identity = 43/110 (39.09%), Postives = 79/110 (71.82%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660
            + + +M+++I+ ++T+   +RTGR++  +LD ++V+YYGS V +  +A +   D+ ++ +QP++K  ++++EKAI  +DLG+ P   G++IR+  P LT ERRKEL+KVV
Sbjct:    9 NAEQKMQKSIEALKTDLAKIRTGRAHTGLLDHVQVDYYGSMVPISQVANVTLVDARTIGVQPWEKKMVQAVEKAIREADLGLNPATMGDIIRVPTPALTEERRKELTKVV 118          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_RALME (Ribosome-recycling factor OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=frr PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.837e-21
Identity = 44/109 (40.37%), Postives = 78/109 (71.56%), Query Frame = 1
Query:  334 VKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660
            V+ +M+++I+  + +   VRTGR++  +LD ++V+YYGS V +  +A ++  D+ ++ +QP++K  ++++EKAI   DLG+ P   G+VIR+ +P LT ERR+EL+KVV
Sbjct:   10 VEQKMQKSIEAFKADLAKVRTGRAHTGLLDHVQVDYYGSMVPISQVAAVSLADARTISVQPWEKKMVQAVEKAIRDGDLGLNPATMGDVIRVPMPPLTEERRRELTKVV 118          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_PHYAS (Ribosome-recycling factor OS=Phytoplasma australiense GN=frr PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.837e-21
Identity = 47/111 (42.34%), Postives = 77/111 (69.37%), Query Frame = 1
Query:  334 VKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666
            ++ +M +  +++  NF  +RTG +NP +L+K+ + YYGS   LK+++ I+  + + L I+PY+K+ + SI+KAI++SDLG+TP  DG ++RL  P+ T ERRK L K V K
Sbjct:   12 IEKKMSQAQEVMLKNFLEIRTGYANPNILNKVNINYYGSQTPLKTLSSISVSEGTQLQIKPYEKTLIPSIKKAILASDLGITPETDGVLLRLNFPKPTEERRKVLVKEVDK 122          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_NITEC (Ribosome-recycling factor OS=Nitrosomonas eutropha (strain C91) GN=frr PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.837e-21
Identity = 42/106 (39.62%), Postives = 76/106 (71.70%), Query Frame = 1
Query:  343 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660
            +M++++D ++ +F+ VR+GR +  +LD I V+YYG+P  ++ +A +   D+ ++ + P+DK +  +IEKAI  SD+G+ P   GE++R+ +P LT ERRK+L+K+V
Sbjct:   12 KMQKSLDALKVDFSKVRSGRPHTGLLDHITVDYYGTPTPIRQLANVTLADARTIGVIPWDKKAFSAIEKAIRDSDMGLNPMTAGEMVRVPMPPLTEERRKDLTKIV 117          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_METFK (Ribosome-recycling factor OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=frr PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.837e-21
Identity = 43/109 (39.45%), Postives = 78/109 (71.56%), Query Frame = 1
Query:  343 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669
            +M+++I+ ++ + + VRTGR++  +LD ++VEYYGS V++  +A ++  D+ +L +Q Y+K+    +EKAI  +DLG+ P  +G++IR+ +P LT ERR++L KVV  +
Sbjct:   12 KMQKSIEALKADLSKVRTGRAHTGLLDHVQVEYYGSMVAINQVASVSLGDARTLNVQAYEKNMTPKVEKAIRDADLGLNPATNGDIIRVPMPMLTEERRRDLVKVVRSE 120          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_CUPTR (Ribosome-recycling factor OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=frr PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.837e-21
Identity = 45/106 (42.45%), Postives = 74/106 (69.81%), Query Frame = 1
Query:  343 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660
            +M+++I+  + +   +RTGR++  +LD ++V+YYGS V +  +A I   D+ ++ +QP++K  + ++EKAI   DLG+ P   GEVIR+ +P LT ERRKEL+KVV
Sbjct:   13 KMQKSIEAFKADLAKIRTGRAHTGLLDHVQVDYYGSMVPISQVAAIGLADARTITVQPWEKKMVSAVEKAIRDCDLGLNPATMGEVIRVPMPALTEERRKELTKVV 118          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_BURS3 (Ribosome-recycling factor OS=Burkholderia sp. (strain 383) GN=frr PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.837e-21
Identity = 45/112 (40.18%), Postives = 77/112 (68.75%), Query Frame = 1
Query:  334 VKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669
            V+ +M+R+ID  +++   +RTGR++  MLD ++V+YYGS V +  +A +   D+ ++ +QP++K  +  +EKAI  +DLG+ P   G+ IR+ +P LT ERR+EL+KVV  +
Sbjct:   10 VEQKMQRSIDAFKSDLAKIRTGRAHTGMLDHVQVDYYGSMVPISQVANMTLVDARTIGVQPWEKPMVAKVEKAIREADLGLNPATSGDQIRVPMPALTEERRRELTKVVKSE 121          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_VIBCM (Ribosome-recycling factor OS=Vibrio cholerae serotype O1 (strain M66-2) GN=frr PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.705e-21
Identity = 44/110 (40.00%), Postives = 75/110 (68.18%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660
            D + RME++++ ++   + +RTGR++P++L  I V+YYG+P  L  +A +   D+ +L I  +D+   + +EKAI+ SDLG+ P + G +IR+ LP LT ERR++L K+V
Sbjct:    8 DAQERMEKSVEALKNGLSKIRTGRAHPSLLTGISVDYYGAPTPLNQVANVIAEDARTLAITVFDRELTQKVEKAILMSDLGLNPMSAGTIIRVPLPPLTEERRRDLVKIV 117          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_VIBCH (Ribosome-recycling factor OS=Vibrio cholerae GN=frr PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.705e-21
Identity = 44/110 (40.00%), Postives = 75/110 (68.18%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660
            D + RME++++ ++   + +RTGR++P++L  I V+YYG+P  L  +A +   D+ +L I  +D+   + +EKAI+ SDLG+ P + G +IR+ LP LT ERR++L K+V
Sbjct:    8 DAQERMEKSVEALKNGLSKIRTGRAHPSLLTGISVDYYGAPTPLNQVANVIAEDARTLAITVFDRELTQKVEKAILMSDLGLNPMSAGTIIRVPLPPLTEERRRDLVKIV 117          
The following BLAST results are available for this feature:
BLAST of CK939527 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_VIBVY2.837e-2142.73Ribosome-recycling factor OS=Vibrio vulnificus (st... [more]
RRF_RALPJ2.837e-2139.09Ribosome-recycling factor OS=Ralstonia pickettii (... [more]
RRF_RALME2.837e-2140.37Ribosome-recycling factor OS=Ralstonia metallidura... [more]
RRF_PHYAS2.837e-2142.34Ribosome-recycling factor OS=Phytoplasma australie... [more]
RRF_NITEC2.837e-2139.62Ribosome-recycling factor OS=Nitrosomonas eutropha... [more]
RRF_METFK2.837e-2139.45Ribosome-recycling factor OS=Methylobacillus flage... [more]
RRF_CUPTR2.837e-2142.45Ribosome-recycling factor OS=Cupriavidus taiwanens... [more]
RRF_BURS32.837e-2140.18Ribosome-recycling factor OS=Burkholderia sp. (str... [more]
RRF_VIBCM3.705e-2140.00Ribosome-recycling factor OS=Vibrio cholerae serot... [more]
RRF_VIBCH3.705e-2140.00Ribosome-recycling factor OS=Vibrio cholerae GN=fr... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004749_D04 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IF_D04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939527 ID=CK939527; Name=CK939527; organism=Citrus sinensis; type=EST; length=671bp
GCGGGGAACTANNNTCTTAAGTCTGAGCGAGCGTTCATGGCCACGCACTT
TTCTTCAACAGGGCCCATGCGGTCCATTTTCCAACTGAAATCAAATCCTC
CCAAATGCCTCCTTTTCCTCCCTGATTCTTGTCATAGAAGAGCCGAAACT
GCCACGTGCCGTGCTAGCAGCGTTAGTGTGCGCCAGTGGAGCTCAGCTGC
AAACTACTCTAGACTTGTGAAATTATCCAACAAACCTATCGTTGTAAGAC
AACTGGCACACAAGAGAAATGGAGTTGTGAGGTGTGCAACTATTGAAGAA
ATTGAAGCGGAAAAATCTTCCATTGAGAAGGATGTTAAAGCTAGGATGGA
AAGGACTATCGATATGGTCCGAACCAATTTCAATTCCGTGAGGACAGGAA
GATCGAATCCAGCTATGCTAGATAAGATTGAGGTGGAATACTATGGAAGC
CCAGTAAGTTTGAAGAGCATAGCTCAAATCAATACCCCTGATTCAAGTTC
TCTATTGATTCAACCATATGACAAATCCAGCTTAAAGTCTATAGAGAAGG
CCATAGTAAGCTCTGATCTTGGCATGACCCCAAACAATGATGGTGAAGTC
ATACGGTTAACCCTTCCTCAATTGACATCCGAAAGGAGGAAGGAACTGTC
AAAGGTTGTGGCCAAACAGGC
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