CK939527
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_VIBC3 (Ribosome-recycling factor OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=frr PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 3.705e-21 Identity = 44/110 (40.00%), Postives = 75/110 (68.18%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660 D + RME++++ ++ + +RTGR++P++L I V+YYG+P L +A + D+ +L I +D+ + +EKAI+ SDLG+ P + G +IR+ LP LT ERR++L K+V Sbjct: 8 DAQERMEKSVEALKNGLSKIRTGRAHPSLLTGISVDYYGAPTPLNQVANVIAEDARTLAITVFDRELTQKVEKAILMSDLGLNPMSAGTIIRVPLPPLTEERRRDLVKIV 117
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_VESOH (Ribosome-recycling factor OS=Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA) GN=frr PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 3.705e-21 Identity = 46/106 (43.40%), Postives = 74/106 (69.81%), Query Frame = 1 Query: 343 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660 +M ++I+ ++ F+ +R R++P++L++I + YYGS V L +A I+T DS +L P++K + IEKAI++SDLG+ P G+VIR+ LP LT ERR EL K++ Sbjct: 12 KMNKSINSLKNAFSKIRASRAHPSLLEQIHINYYGSMVPLSQVANISTEDSRTLKASPWEKDMVSVIEKAIMTSDLGLNPQTIGQVIRIHLPPLTQERRGELVKII 117
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_THESQ (Ribosome-recycling factor OS=Thermotoga sp. (strain RQ2) GN=frr PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 3.705e-21 Identity = 47/108 (43.52%), Postives = 75/108 (69.44%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSK 654 + K +M+RT++ + +RTG+ +PA+L++I+V+YYG P + +A I+ + +L+I+P+DKS L IEKAI +SDLG+ P NDG VIRL P T+E+R++ K Sbjct: 8 EAKEKMKRTLEKIEDELRKMRTGKPSPAILEEIKVDYYGVPTPVNQLATISISEERTLVIKPWDKSVLSLIEKAINASDLGLNPINDGNVIRLVFPSPTTEQREKWVK 115
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_THEMA (Ribosome-recycling factor OS=Thermotoga maritima GN=frr PE=1 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 3.705e-21 Identity = 47/108 (43.52%), Postives = 75/108 (69.44%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSK 654 + K +M+RT++ + +RTG+ +PA+L++I+V+YYG P + +A I+ + +L+I+P+DKS L IEKAI +SDLG+ P NDG VIRL P T+E+R++ K Sbjct: 8 EAKEKMKRTLEKIEDELRKMRTGKPSPAILEEIKVDYYGVPTPVNQLATISISEERTLVIKPWDKSVLSLIEKAINASDLGLNPINDGNVIRLVFPSPTTEQREKWVK 115
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_SHESR (Ribosome-recycling factor OS=Shewanella sp. (strain MR-7) GN=frr PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 3.705e-21 Identity = 45/110 (40.91%), Postives = 74/110 (67.27%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660 D + RM + ++ + VRTGR++P++LD I+V YYG+ L +A + D+ +L + +D+S+++++EKAI+SSDLG+ P + G +R+ LP LT ERRK+ KVV Sbjct: 8 DAQERMGKCVEATKNQMAKVRTGRAHPSLLDSIQVSYYGTMTPLNQVANVGIEDARTLSVTVFDRSAIQAVEKAIMSSDLGLNPMSAGATLRIPLPALTEERRKDFIKVV 117
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_SHESM (Ribosome-recycling factor OS=Shewanella sp. (strain MR-4) GN=frr PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 3.705e-21 Identity = 45/110 (40.91%), Postives = 74/110 (67.27%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660 D + RM + ++ + VRTGR++P++LD I+V YYG+ L +A + D+ +L + +D+S+++++EKAI+SSDLG+ P + G +R+ LP LT ERRK+ KVV Sbjct: 8 DAQERMGKCVEATKNQMAKVRTGRAHPSLLDSIQVSYYGTMTPLNQVANVGIEDARTLSVTVFDRSAIQAVEKAIMSSDLGLNPMSAGATLRIPLPALTEERRKDFIKVV 117
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_SHESA (Ribosome-recycling factor OS=Shewanella sp. (strain ANA-3) GN=frr PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 3.705e-21 Identity = 45/110 (40.91%), Postives = 74/110 (67.27%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660 D + RM + ++ + VRTGR++P++LD I+V YYG+ L +A + D+ +L + +D+S+++++EKAI+SSDLG+ P + G +R+ LP LT ERRK+ KVV Sbjct: 8 DAQERMGKCVEATKNQMAKVRTGRAHPSLLDSIQVSYYGTMTPLNQVANVGIEDARTLSVTVFDRSAIQAVEKAIMSSDLGLNPMSAGATLRIPLPALTEERRKDFIKVV 117
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_RICBR (Ribosome-recycling factor OS=Rickettsia bellii (strain RML369-C) GN=frr PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 3.705e-21 Identity = 45/112 (40.18%), Postives = 79/112 (70.54%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666 +++ +M++ + ++ +RTGR++ +LD + VE YG + L +A + TPD+ ++ +Q +DKS + S+EKAI ++LG+TP++DG++IRL +P LT ERRKEL+K+ K Sbjct: 9 NLQEKMDKALKVLDHELKGLRTGRASVNLLDSVTVEAYGDRMPLSQVASLTTPDARTINVQVWDKSMVSSVEKAITVANLGLTPSSDGQLIRLPIPALTEERRKELAKLAHK 120
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_RICB8 (Ribosome-recycling factor OS=Rickettsia bellii (strain OSU 85-389) GN=frr PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 3.705e-21 Identity = 45/112 (40.18%), Postives = 79/112 (70.54%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666 +++ +M++ + ++ +RTGR++ +LD + VE YG + L +A + TPD+ ++ +Q +DKS + S+EKAI ++LG+TP++DG++IRL +P LT ERRKEL+K+ K Sbjct: 9 NLQEKMDKALKVLDHELKGLRTGRASVNLLDSVTVEAYGDRMPLSQVASLTTPDARTINVQVWDKSMVSSVEKAITVANLGLTPSSDGQLIRLPIPALTEERRKELAKLAHK 120
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_NITMU (Ribosome-recycling factor OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=frr PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 3.705e-21 Identity = 42/106 (39.62%), Postives = 77/106 (72.64%), Query Frame = 1 Query: 343 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660 +M+++++ ++ + +RTGR++ +LD + V+YYG+P ++ +A I+ D+ ++ + P++K L +IEKAI +SDLG+ P GE+IR+ +P LT ERR++L+KVV Sbjct: 12 KMQKSLEALKLDLGKIRTGRAHTGLLDHVTVDYYGNPTAINQVANISLADARTITVAPWEKKMLGAIEKAIRNSDLGLNPTTVGELIRVPMPPLTEERRRDLTKVV 117 The following BLAST results are available for this feature:
BLAST of CK939527 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CK939527 ID=CK939527; Name=CK939527; organism=Citrus sinensis; type=EST; length=671bpback to top |