CK939527

Overview
NameCK939527
Unique NameCK939527
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length671
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_VIBC3 (Ribosome-recycling factor OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=frr PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.705e-21
Identity = 44/110 (40.00%), Postives = 75/110 (68.18%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660
            D + RME++++ ++   + +RTGR++P++L  I V+YYG+P  L  +A +   D+ +L I  +D+   + +EKAI+ SDLG+ P + G +IR+ LP LT ERR++L K+V
Sbjct:    8 DAQERMEKSVEALKNGLSKIRTGRAHPSLLTGISVDYYGAPTPLNQVANVIAEDARTLAITVFDRELTQKVEKAILMSDLGLNPMSAGTIIRVPLPPLTEERRRDLVKIV 117          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_VESOH (Ribosome-recycling factor OS=Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA) GN=frr PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.705e-21
Identity = 46/106 (43.40%), Postives = 74/106 (69.81%), Query Frame = 1
Query:  343 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660
            +M ++I+ ++  F+ +R  R++P++L++I + YYGS V L  +A I+T DS +L   P++K  +  IEKAI++SDLG+ P   G+VIR+ LP LT ERR EL K++
Sbjct:   12 KMNKSINSLKNAFSKIRASRAHPSLLEQIHINYYGSMVPLSQVANISTEDSRTLKASPWEKDMVSVIEKAIMTSDLGLNPQTIGQVIRIHLPPLTQERRGELVKII 117          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_THESQ (Ribosome-recycling factor OS=Thermotoga sp. (strain RQ2) GN=frr PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.705e-21
Identity = 47/108 (43.52%), Postives = 75/108 (69.44%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSK 654
            + K +M+RT++ +      +RTG+ +PA+L++I+V+YYG P  +  +A I+  +  +L+I+P+DKS L  IEKAI +SDLG+ P NDG VIRL  P  T+E+R++  K
Sbjct:    8 EAKEKMKRTLEKIEDELRKMRTGKPSPAILEEIKVDYYGVPTPVNQLATISISEERTLVIKPWDKSVLSLIEKAINASDLGLNPINDGNVIRLVFPSPTTEQREKWVK 115          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_THEMA (Ribosome-recycling factor OS=Thermotoga maritima GN=frr PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.705e-21
Identity = 47/108 (43.52%), Postives = 75/108 (69.44%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSK 654
            + K +M+RT++ +      +RTG+ +PA+L++I+V+YYG P  +  +A I+  +  +L+I+P+DKS L  IEKAI +SDLG+ P NDG VIRL  P  T+E+R++  K
Sbjct:    8 EAKEKMKRTLEKIEDELRKMRTGKPSPAILEEIKVDYYGVPTPVNQLATISISEERTLVIKPWDKSVLSLIEKAINASDLGLNPINDGNVIRLVFPSPTTEQREKWVK 115          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_SHESR (Ribosome-recycling factor OS=Shewanella sp. (strain MR-7) GN=frr PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.705e-21
Identity = 45/110 (40.91%), Postives = 74/110 (67.27%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660
            D + RM + ++  +     VRTGR++P++LD I+V YYG+   L  +A +   D+ +L +  +D+S+++++EKAI+SSDLG+ P + G  +R+ LP LT ERRK+  KVV
Sbjct:    8 DAQERMGKCVEATKNQMAKVRTGRAHPSLLDSIQVSYYGTMTPLNQVANVGIEDARTLSVTVFDRSAIQAVEKAIMSSDLGLNPMSAGATLRIPLPALTEERRKDFIKVV 117          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_SHESM (Ribosome-recycling factor OS=Shewanella sp. (strain MR-4) GN=frr PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.705e-21
Identity = 45/110 (40.91%), Postives = 74/110 (67.27%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660
            D + RM + ++  +     VRTGR++P++LD I+V YYG+   L  +A +   D+ +L +  +D+S+++++EKAI+SSDLG+ P + G  +R+ LP LT ERRK+  KVV
Sbjct:    8 DAQERMGKCVEATKNQMAKVRTGRAHPSLLDSIQVSYYGTMTPLNQVANVGIEDARTLSVTVFDRSAIQAVEKAIMSSDLGLNPMSAGATLRIPLPALTEERRKDFIKVV 117          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_SHESA (Ribosome-recycling factor OS=Shewanella sp. (strain ANA-3) GN=frr PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.705e-21
Identity = 45/110 (40.91%), Postives = 74/110 (67.27%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660
            D + RM + ++  +     VRTGR++P++LD I+V YYG+   L  +A +   D+ +L +  +D+S+++++EKAI+SSDLG+ P + G  +R+ LP LT ERRK+  KVV
Sbjct:    8 DAQERMGKCVEATKNQMAKVRTGRAHPSLLDSIQVSYYGTMTPLNQVANVGIEDARTLSVTVFDRSAIQAVEKAIMSSDLGLNPMSAGATLRIPLPALTEERRKDFIKVV 117          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_RICBR (Ribosome-recycling factor OS=Rickettsia bellii (strain RML369-C) GN=frr PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.705e-21
Identity = 45/112 (40.18%), Postives = 79/112 (70.54%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666
            +++ +M++ + ++      +RTGR++  +LD + VE YG  + L  +A + TPD+ ++ +Q +DKS + S+EKAI  ++LG+TP++DG++IRL +P LT ERRKEL+K+  K
Sbjct:    9 NLQEKMDKALKVLDHELKGLRTGRASVNLLDSVTVEAYGDRMPLSQVASLTTPDARTINVQVWDKSMVSSVEKAITVANLGLTPSSDGQLIRLPIPALTEERRKELAKLAHK 120          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_RICB8 (Ribosome-recycling factor OS=Rickettsia bellii (strain OSU 85-389) GN=frr PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.705e-21
Identity = 45/112 (40.18%), Postives = 79/112 (70.54%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666
            +++ +M++ + ++      +RTGR++  +LD + VE YG  + L  +A + TPD+ ++ +Q +DKS + S+EKAI  ++LG+TP++DG++IRL +P LT ERRKEL+K+  K
Sbjct:    9 NLQEKMDKALKVLDHELKGLRTGRASVNLLDSVTVEAYGDRMPLSQVASLTTPDARTINVQVWDKSMVSSVEKAITVANLGLTPSSDGQLIRLPIPALTEERRKELAKLAHK 120          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_NITMU (Ribosome-recycling factor OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=frr PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.705e-21
Identity = 42/106 (39.62%), Postives = 77/106 (72.64%), Query Frame = 1
Query:  343 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660
            +M+++++ ++ +   +RTGR++  +LD + V+YYG+P ++  +A I+  D+ ++ + P++K  L +IEKAI +SDLG+ P   GE+IR+ +P LT ERR++L+KVV
Sbjct:   12 KMQKSLEALKLDLGKIRTGRAHTGLLDHVTVDYYGNPTAINQVANISLADARTITVAPWEKKMLGAIEKAIRNSDLGLNPTTVGELIRVPMPPLTEERRRDLTKVV 117          
The following BLAST results are available for this feature:
BLAST of CK939527 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_VIBC33.705e-2140.00Ribosome-recycling factor OS=Vibrio cholerae serot... [more]
RRF_VESOH3.705e-2143.40Ribosome-recycling factor OS=Vesicomyosocius okuta... [more]
RRF_THESQ3.705e-2143.52Ribosome-recycling factor OS=Thermotoga sp. (strai... [more]
RRF_THEMA3.705e-2143.52Ribosome-recycling factor OS=Thermotoga maritima G... [more]
RRF_SHESR3.705e-2140.91Ribosome-recycling factor OS=Shewanella sp. (strai... [more]
RRF_SHESM3.705e-2140.91Ribosome-recycling factor OS=Shewanella sp. (strai... [more]
RRF_SHESA3.705e-2140.91Ribosome-recycling factor OS=Shewanella sp. (strai... [more]
RRF_RICBR3.705e-2140.18Ribosome-recycling factor OS=Rickettsia bellii (st... [more]
RRF_RICB83.705e-2140.18Ribosome-recycling factor OS=Rickettsia bellii (st... [more]
RRF_NITMU3.705e-2139.62Ribosome-recycling factor OS=Nitrosospira multifor... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004749_D04 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IF_D04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939527 ID=CK939527; Name=CK939527; organism=Citrus sinensis; type=EST; length=671bp
GCGGGGAACTANNNTCTTAAGTCTGAGCGAGCGTTCATGGCCACGCACTT
TTCTTCAACAGGGCCCATGCGGTCCATTTTCCAACTGAAATCAAATCCTC
CCAAATGCCTCCTTTTCCTCCCTGATTCTTGTCATAGAAGAGCCGAAACT
GCCACGTGCCGTGCTAGCAGCGTTAGTGTGCGCCAGTGGAGCTCAGCTGC
AAACTACTCTAGACTTGTGAAATTATCCAACAAACCTATCGTTGTAAGAC
AACTGGCACACAAGAGAAATGGAGTTGTGAGGTGTGCAACTATTGAAGAA
ATTGAAGCGGAAAAATCTTCCATTGAGAAGGATGTTAAAGCTAGGATGGA
AAGGACTATCGATATGGTCCGAACCAATTTCAATTCCGTGAGGACAGGAA
GATCGAATCCAGCTATGCTAGATAAGATTGAGGTGGAATACTATGGAAGC
CCAGTAAGTTTGAAGAGCATAGCTCAAATCAATACCCCTGATTCAAGTTC
TCTATTGATTCAACCATATGACAAATCCAGCTTAAAGTCTATAGAGAAGG
CCATAGTAAGCTCTGATCTTGGCATGACCCCAAACAATGATGGTGAAGTC
ATACGGTTAACCCTTCCTCAATTGACATCCGAAAGGAGGAAGGAACTGTC
AAAGGTTGTGGCCAAACAGGC
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