CK939527
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_BURMS (Ribosome-recycling factor OS=Burkholderia mallei (strain SAVP1) GN=frr PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 4.838e-21 Identity = 43/112 (38.39%), Postives = 78/112 (69.64%), Query Frame = 1 Query: 334 VKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669 V+ +M+R+I+ + + +RTGR++ +LD ++V+YYGS V + +A + D+ ++ +QP++K+ + +EKAI +DLG+ P G++IR+ +P LT ERR+EL+KVV + Sbjct: 10 VEQKMQRSIEAFKNDLAKIRTGRAHTGLLDHVQVDYYGSMVPISQVANLTLVDARTIGVQPWEKTMVAKVEKAIREADLGLNPATSGDLIRVPMPPLTEERRRELTKVVKSE 121
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_BURMA (Ribosome-recycling factor OS=Burkholderia mallei GN=frr PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 4.838e-21 Identity = 43/112 (38.39%), Postives = 78/112 (69.64%), Query Frame = 1 Query: 334 VKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669 V+ +M+R+I+ + + +RTGR++ +LD ++V+YYGS V + +A + D+ ++ +QP++K+ + +EKAI +DLG+ P G++IR+ +P LT ERR+EL+KVV + Sbjct: 10 VEQKMQRSIEAFKNDLAKIRTGRAHTGLLDHVQVDYYGSMVPISQVANLTLVDARTIGVQPWEKTMVAKVEKAIREADLGLNPATSGDLIRVPMPPLTEERRRELTKVVKSE 121
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_BURM9 (Ribosome-recycling factor OS=Burkholderia mallei (strain NCTC 10229) GN=frr PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 4.838e-21 Identity = 43/112 (38.39%), Postives = 78/112 (69.64%), Query Frame = 1 Query: 334 VKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669 V+ +M+R+I+ + + +RTGR++ +LD ++V+YYGS V + +A + D+ ++ +QP++K+ + +EKAI +DLG+ P G++IR+ +P LT ERR+EL+KVV + Sbjct: 10 VEQKMQRSIEAFKNDLAKIRTGRAHTGLLDHVQVDYYGSMVPISQVANLTLVDARTIGVQPWEKTMVAKVEKAIREADLGLNPATSGDLIRVPMPPLTEERRRELTKVVKSE 121
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_BURM7 (Ribosome-recycling factor OS=Burkholderia mallei (strain NCTC 10247) GN=frr PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 4.838e-21 Identity = 43/112 (38.39%), Postives = 78/112 (69.64%), Query Frame = 1 Query: 334 VKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669 V+ +M+R+I+ + + +RTGR++ +LD ++V+YYGS V + +A + D+ ++ +QP++K+ + +EKAI +DLG+ P G++IR+ +P LT ERR+EL+KVV + Sbjct: 10 VEQKMQRSIEAFKNDLAKIRTGRAHTGLLDHVQVDYYGSMVPISQVANLTLVDARTIGVQPWEKTMVAKVEKAIREADLGLNPATSGDLIRVPMPPLTEERRRELTKVVKSE 121
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_AZOSB (Ribosome-recycling factor OS=Azoarcus sp. (strain BH72) GN=frr PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 4.838e-21 Identity = 46/109 (42.20%), Postives = 76/109 (69.72%), Query Frame = 1 Query: 343 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669 +M+++ID ++T+ +RTGR++ +LD + VEYYGS V + +A I D+ ++ +Q ++K L +EKAI DLG+ P N GE+IR+ +P LT ERR++L+KVV ++ Sbjct: 12 KMQKSIDALKTDLAKIRTGRAHTGLLDHVMVEYYGSMVPINQVANITLIDARTIGVQTWEKPMLGKVEKAIRDCDLGLNPANMGEIIRVPMPALTEERRRDLTKVVRQE 120
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_THEP1 (Ribosome-recycling factor OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=frr PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 6.319e-21 Identity = 46/108 (42.59%), Postives = 75/108 (69.44%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSK 654 + K +M++T++ + +RTG+ +PA+L++I+V+YYG P + +A I+ + +L+I+P+DKS L IEKAI +SDLG+ P NDG VIRL P T+E+R++ K Sbjct: 8 EAKEKMKKTLERIEDELRKMRTGKPSPAILEEIKVDYYGVPTPVNQLATISVSEERTLVIKPWDKSVLSLIEKAINASDLGLNPINDGNVIRLVFPSPTTEQREKWVK 115
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_POLNA (Ribosome-recycling factor OS=Polaromonas naphthalenivorans (strain CJ2) GN=frr PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 6.319e-21 Identity = 44/106 (41.51%), Postives = 73/106 (68.87%), Query Frame = 1 Query: 343 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660 +M+++++ + N +RTGR+NP +LD + V+YYGS V + +A + D+ ++ + P++K IEKAI SDLG+ P + G++IR+ +P +T ERRKEL+KVV Sbjct: 13 KMQQSLESFQHNLTKIRTGRANPGLLDTVHVDYYGSMVPISQVANVALLDARTISVSPWEKGMGAKIEKAIRDSDLGLNPASQGDLIRVPMPAMTEERRKELTKVV 118
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_DIAST (Ribosome-recycling factor OS=Diaphorobacter sp. (strain TPSY) GN=frr PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 6.319e-21 Identity = 46/111 (41.44%), Postives = 76/111 (68.47%), Query Frame = 1 Query: 337 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669 +A+M+++I + N +RTGR+NP +LD I VEYYGS V L +A + D+ ++ +QP++K+ IEKAI SDLG+ P + G++IR+ +P ++ ERRKE++K+ + Sbjct: 11 EAKMDQSIAAFKNNLAKIRTGRANPQLLDTIHVEYYGSMVPLSQVANVALLDARTISVQPWEKNMGAKIEKAIRESDLGLNPASMGDLIRVPMPPMSEERRKEMTKLARSE 121
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_DESPS (Ribosome-recycling factor OS=Desulfotalea psychrophila GN=frr PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 6.319e-21 Identity = 47/112 (41.96%), Postives = 75/112 (66.96%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666 ++ RM ++++ + + + VRTGR++ ++LD I V YGS + L +A + P+S + +QP+D + IEKAI+ S LG+ P NDG+V+RL +PQLT +RRK+L K V K Sbjct: 7 EMSGRMAKSVEAFKNDLSRVRTGRASISILDDITVVAYGSTMPLNQVATLTIPESRMIALQPWDPQMIPPIEKAILKSGLGLNPVNDGKVVRLNIPQLTEDRRKDLVKQVKK 118
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_BURCH (Ribosome-recycling factor OS=Burkholderia cenocepacia (strain HI2424) GN=frr PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 6.319e-21 Identity = 43/112 (38.39%), Postives = 78/112 (69.64%), Query Frame = 1 Query: 334 VKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669 V+ +M+R+I+ + + +RTGR++ +LD ++V+YYGS V + +A + D+ ++ +QP++K+ + +EKAI +DLG+ P G++IR+ +P LT ERR+EL+KVV + Sbjct: 10 VEQKMQRSIEAFKNDLAKIRTGRAHTGLLDHVQVDYYGSMVPISQVANLTLVDARTIGVQPWEKNMVAKVEKAIREADLGLNPATTGDLIRVPMPALTEERRRELTKVVKSE 121 The following BLAST results are available for this feature:
BLAST of CK939527 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CK939527 ID=CK939527; Name=CK939527; organism=Citrus sinensis; type=EST; length=671bpback to top |