CK939527

Overview
NameCK939527
Unique NameCK939527
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length671
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_BURMS (Ribosome-recycling factor OS=Burkholderia mallei (strain SAVP1) GN=frr PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.838e-21
Identity = 43/112 (38.39%), Postives = 78/112 (69.64%), Query Frame = 1
Query:  334 VKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669
            V+ +M+R+I+  + +   +RTGR++  +LD ++V+YYGS V +  +A +   D+ ++ +QP++K+ +  +EKAI  +DLG+ P   G++IR+ +P LT ERR+EL+KVV  +
Sbjct:   10 VEQKMQRSIEAFKNDLAKIRTGRAHTGLLDHVQVDYYGSMVPISQVANLTLVDARTIGVQPWEKTMVAKVEKAIREADLGLNPATSGDLIRVPMPPLTEERRRELTKVVKSE 121          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_BURMA (Ribosome-recycling factor OS=Burkholderia mallei GN=frr PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.838e-21
Identity = 43/112 (38.39%), Postives = 78/112 (69.64%), Query Frame = 1
Query:  334 VKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669
            V+ +M+R+I+  + +   +RTGR++  +LD ++V+YYGS V +  +A +   D+ ++ +QP++K+ +  +EKAI  +DLG+ P   G++IR+ +P LT ERR+EL+KVV  +
Sbjct:   10 VEQKMQRSIEAFKNDLAKIRTGRAHTGLLDHVQVDYYGSMVPISQVANLTLVDARTIGVQPWEKTMVAKVEKAIREADLGLNPATSGDLIRVPMPPLTEERRRELTKVVKSE 121          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_BURM9 (Ribosome-recycling factor OS=Burkholderia mallei (strain NCTC 10229) GN=frr PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.838e-21
Identity = 43/112 (38.39%), Postives = 78/112 (69.64%), Query Frame = 1
Query:  334 VKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669
            V+ +M+R+I+  + +   +RTGR++  +LD ++V+YYGS V +  +A +   D+ ++ +QP++K+ +  +EKAI  +DLG+ P   G++IR+ +P LT ERR+EL+KVV  +
Sbjct:   10 VEQKMQRSIEAFKNDLAKIRTGRAHTGLLDHVQVDYYGSMVPISQVANLTLVDARTIGVQPWEKTMVAKVEKAIREADLGLNPATSGDLIRVPMPPLTEERRRELTKVVKSE 121          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_BURM7 (Ribosome-recycling factor OS=Burkholderia mallei (strain NCTC 10247) GN=frr PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.838e-21
Identity = 43/112 (38.39%), Postives = 78/112 (69.64%), Query Frame = 1
Query:  334 VKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669
            V+ +M+R+I+  + +   +RTGR++  +LD ++V+YYGS V +  +A +   D+ ++ +QP++K+ +  +EKAI  +DLG+ P   G++IR+ +P LT ERR+EL+KVV  +
Sbjct:   10 VEQKMQRSIEAFKNDLAKIRTGRAHTGLLDHVQVDYYGSMVPISQVANLTLVDARTIGVQPWEKTMVAKVEKAIREADLGLNPATSGDLIRVPMPPLTEERRRELTKVVKSE 121          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_AZOSB (Ribosome-recycling factor OS=Azoarcus sp. (strain BH72) GN=frr PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.838e-21
Identity = 46/109 (42.20%), Postives = 76/109 (69.72%), Query Frame = 1
Query:  343 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669
            +M+++ID ++T+   +RTGR++  +LD + VEYYGS V +  +A I   D+ ++ +Q ++K  L  +EKAI   DLG+ P N GE+IR+ +P LT ERR++L+KVV ++
Sbjct:   12 KMQKSIDALKTDLAKIRTGRAHTGLLDHVMVEYYGSMVPINQVANITLIDARTIGVQTWEKPMLGKVEKAIRDCDLGLNPANMGEIIRVPMPALTEERRRDLTKVVRQE 120          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_THEP1 (Ribosome-recycling factor OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=frr PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.319e-21
Identity = 46/108 (42.59%), Postives = 75/108 (69.44%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSK 654
            + K +M++T++ +      +RTG+ +PA+L++I+V+YYG P  +  +A I+  +  +L+I+P+DKS L  IEKAI +SDLG+ P NDG VIRL  P  T+E+R++  K
Sbjct:    8 EAKEKMKKTLERIEDELRKMRTGKPSPAILEEIKVDYYGVPTPVNQLATISVSEERTLVIKPWDKSVLSLIEKAINASDLGLNPINDGNVIRLVFPSPTTEQREKWVK 115          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_POLNA (Ribosome-recycling factor OS=Polaromonas naphthalenivorans (strain CJ2) GN=frr PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.319e-21
Identity = 44/106 (41.51%), Postives = 73/106 (68.87%), Query Frame = 1
Query:  343 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660
            +M+++++  + N   +RTGR+NP +LD + V+YYGS V +  +A +   D+ ++ + P++K     IEKAI  SDLG+ P + G++IR+ +P +T ERRKEL+KVV
Sbjct:   13 KMQQSLESFQHNLTKIRTGRANPGLLDTVHVDYYGSMVPISQVANVALLDARTISVSPWEKGMGAKIEKAIRDSDLGLNPASQGDLIRVPMPAMTEERRKELTKVV 118          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_DIAST (Ribosome-recycling factor OS=Diaphorobacter sp. (strain TPSY) GN=frr PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.319e-21
Identity = 46/111 (41.44%), Postives = 76/111 (68.47%), Query Frame = 1
Query:  337 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669
            +A+M+++I   + N   +RTGR+NP +LD I VEYYGS V L  +A +   D+ ++ +QP++K+    IEKAI  SDLG+ P + G++IR+ +P ++ ERRKE++K+   +
Sbjct:   11 EAKMDQSIAAFKNNLAKIRTGRANPQLLDTIHVEYYGSMVPLSQVANVALLDARTISVQPWEKNMGAKIEKAIRESDLGLNPASMGDLIRVPMPPMSEERRKEMTKLARSE 121          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_DESPS (Ribosome-recycling factor OS=Desulfotalea psychrophila GN=frr PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.319e-21
Identity = 47/112 (41.96%), Postives = 75/112 (66.96%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666
            ++  RM ++++  + + + VRTGR++ ++LD I V  YGS + L  +A +  P+S  + +QP+D   +  IEKAI+ S LG+ P NDG+V+RL +PQLT +RRK+L K V K
Sbjct:    7 EMSGRMAKSVEAFKNDLSRVRTGRASISILDDITVVAYGSTMPLNQVATLTIPESRMIALQPWDPQMIPPIEKAILKSGLGLNPVNDGKVVRLNIPQLTEDRRKDLVKQVKK 118          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_BURCH (Ribosome-recycling factor OS=Burkholderia cenocepacia (strain HI2424) GN=frr PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.319e-21
Identity = 43/112 (38.39%), Postives = 78/112 (69.64%), Query Frame = 1
Query:  334 VKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669
            V+ +M+R+I+  + +   +RTGR++  +LD ++V+YYGS V +  +A +   D+ ++ +QP++K+ +  +EKAI  +DLG+ P   G++IR+ +P LT ERR+EL+KVV  +
Sbjct:   10 VEQKMQRSIEAFKNDLAKIRTGRAHTGLLDHVQVDYYGSMVPISQVANLTLVDARTIGVQPWEKNMVAKVEKAIREADLGLNPATTGDLIRVPMPALTEERRRELTKVVKSE 121          
The following BLAST results are available for this feature:
BLAST of CK939527 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_BURMS4.838e-2138.39Ribosome-recycling factor OS=Burkholderia mallei (... [more]
RRF_BURMA4.838e-2138.39Ribosome-recycling factor OS=Burkholderia mallei G... [more]
RRF_BURM94.838e-2138.39Ribosome-recycling factor OS=Burkholderia mallei (... [more]
RRF_BURM74.838e-2138.39Ribosome-recycling factor OS=Burkholderia mallei (... [more]
RRF_AZOSB4.838e-2142.20Ribosome-recycling factor OS=Azoarcus sp. (strain ... [more]
RRF_THEP16.319e-2142.59Ribosome-recycling factor OS=Thermotoga petrophila... [more]
RRF_POLNA6.319e-2141.51Ribosome-recycling factor OS=Polaromonas naphthale... [more]
RRF_DIAST6.319e-2141.44Ribosome-recycling factor OS=Diaphorobacter sp. (s... [more]
RRF_DESPS6.319e-2141.96Ribosome-recycling factor OS=Desulfotalea psychrop... [more]
RRF_BURCH6.319e-2138.39Ribosome-recycling factor OS=Burkholderia cenocepa... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004749_D04 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IF_D04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939527 ID=CK939527; Name=CK939527; organism=Citrus sinensis; type=EST; length=671bp
GCGGGGAACTANNNTCTTAAGTCTGAGCGAGCGTTCATGGCCACGCACTT
TTCTTCAACAGGGCCCATGCGGTCCATTTTCCAACTGAAATCAAATCCTC
CCAAATGCCTCCTTTTCCTCCCTGATTCTTGTCATAGAAGAGCCGAAACT
GCCACGTGCCGTGCTAGCAGCGTTAGTGTGCGCCAGTGGAGCTCAGCTGC
AAACTACTCTAGACTTGTGAAATTATCCAACAAACCTATCGTTGTAAGAC
AACTGGCACACAAGAGAAATGGAGTTGTGAGGTGTGCAACTATTGAAGAA
ATTGAAGCGGAAAAATCTTCCATTGAGAAGGATGTTAAAGCTAGGATGGA
AAGGACTATCGATATGGTCCGAACCAATTTCAATTCCGTGAGGACAGGAA
GATCGAATCCAGCTATGCTAGATAAGATTGAGGTGGAATACTATGGAAGC
CCAGTAAGTTTGAAGAGCATAGCTCAAATCAATACCCCTGATTCAAGTTC
TCTATTGATTCAACCATATGACAAATCCAGCTTAAAGTCTATAGAGAAGG
CCATAGTAAGCTCTGATCTTGGCATGACCCCAAACAATGATGGTGAAGTC
ATACGGTTAACCCTTCCTCAATTGACATCCGAAAGGAGGAAGGAACTGTC
AAAGGTTGTGGCCAAACAGGC
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