CK939527
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_LEPBJ (Ribosome-recycling factor OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=frr PE=3 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 1.553e-27 Identity = 54/109 (49.54%), Postives = 83/109 (76.15%), Query Frame = 1 Query: 334 VKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660 +K +M++TID+V+ +F +VRTGR+NP++++ I V+YYG+ + + I+ P+ L+I PYDK +K IEKAI +S LG+ P+NDG VIR+ +P+LT ERRKEL+K+V Sbjct: 10 MKTKMDKTIDLVKKDFGTVRTGRANPSLVEDIRVDYYGTLTPINQLGNISVPEPRMLVISPYDKGIMKDIEKAIQASGLGLQPSNDGVVIRIIIPELTGERRKELAKIV 118
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_CLOK5 (Ribosome-recycling factor OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=frr PE=3 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 1.553e-27 Identity = 57/108 (52.78%), Postives = 82/108 (75.93%), Query Frame = 1 Query: 343 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666 +M +T+D++ S++ GR+NPA+LDKIEVEYYG+ + +A I+ P++ L IQP+DKS+LKSIEKAI+ SDLG+ P+NDGE+IRL +P+LT E RK + K + K Sbjct: 12 KMNKTVDVLVKELASMKAGRANPAILDKIEVEYYGAMTPISQLAGISIPEARILAIQPWDKSALKSIEKAILKSDLGINPSNDGEIIRLIIPELTEETRKNIVKNIKK 119
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_CLOK1 (Ribosome-recycling factor OS=Clostridium kluyveri (strain NBRC 12016) GN=frr PE=3 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 1.553e-27 Identity = 57/108 (52.78%), Postives = 82/108 (75.93%), Query Frame = 1 Query: 343 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666 +M +T+D++ S++ GR+NPA+LDKIEVEYYG+ + +A I+ P++ L IQP+DKS+LKSIEKAI+ SDLG+ P+NDGE+IRL +P+LT E RK + K + K Sbjct: 12 KMNKTVDVLVKELASMKAGRANPAILDKIEVEYYGAMTPISQLAGISIPEARILAIQPWDKSALKSIEKAILKSDLGINPSNDGEIIRLIIPELTEETRKNIVKNIKK 119
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_BREBN (Ribosome-recycling factor OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=frr PE=3 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 1.553e-27 Identity = 54/112 (48.21%), Postives = 84/112 (75.00%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666 D++ RM + I+ ++ + +S+R GR+NPAMLD++ V+YYG+P + +A I+ P+ L IQP+DK++LK I++A+ SDLG++P+NDG +IRL +P LT ERRKEL K+ K Sbjct: 8 DMEDRMNKAINALKRDLSSLRAGRANPAMLDRVTVDYYGTPTPISQLANISVPEPRMLTIQPWDKTALKEIDRALQQSDLGISPSNDGVIIRLIIPPLTEERRKELVKLAGK 119
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_KOCRD (Ribosome-recycling factor OS=Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201) GN=frr PE=3 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 2.028e-27 Identity = 55/110 (50.00%), Postives = 78/110 (70.91%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660 D RM + +D +T+F++VRTGR+NPA+ + V YYG+P L+ +A TP++ +LLI PYD+S+L IEKA+ SD+G P NDG VIR+ +P+LT ERRKE K+V Sbjct: 8 DATTRMGKAVDAAKTDFSTVRTGRANPALFSSLLVAYYGTPTPLQQLASFQTPEARTLLITPYDRSALNDIEKALRDSDIGANPANDGNVIRVVMPELTEERRKEYVKIV 117
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_GEOKA (Ribosome-recycling factor OS=Geobacillus kaustophilus GN=frr PE=3 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 2.028e-27 Identity = 54/110 (49.09%), Postives = 81/110 (73.64%), Query Frame = 1 Query: 337 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666 K +M++ + S+R GR+N +L+K+ V+YYG P + +A I+ P++ L+IQPYDKS++K +EKAI++SDLG+TP+NDG VIRL +P LT ERR+EL+K+V K Sbjct: 10 KEKMDKAVQAFTRELASIRAGRANAGLLEKVTVDYYGVPTPINQLASISVPEARLLVIQPYDKSAIKEMEKAILASDLGLTPSNDGSVIRLVIPPLTEERRRELAKLVKK 119
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_BACHD (Ribosome-recycling factor OS=Bacillus halodurans GN=frr PE=3 SV=3) HSP 1 Score: 122.479 bits (306), Expect = 2.028e-27 Identity = 57/112 (50.89%), Postives = 81/112 (72.32%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666 D + RM + + + +R GR+NPAMLD+I VEYYG+ L +A I+ P++ L+IQP+DKSS+ IE+AI SDLG+TP+NDG VIR+T+P LT ERR++L+K+V K Sbjct: 8 DAEQRMTKATEALGRELAKLRAGRANPAMLDRITVEYYGAETPLNQLATISVPEARLLVIQPFDKSSISDIERAIQKSDLGLTPSNDGTVIRITIPPLTEERRRDLTKLVKK 119
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_RUBXD (Ribosome-recycling factor OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=frr PE=3 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 2.649e-27 Identity = 57/110 (51.82%), Postives = 82/110 (74.55%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660 D + RM+ ++ VR F ++RTGR+NPA+LD+IEVE YG+ + +KS+A I P+ L I PYD + LK+IE+AI SDLG+ P NDG++IRL +P+LT ERR+EL ++V Sbjct: 9 DAERRMKGALEAVRHQFATIRTGRANPALLDRIEVEAYGTRMPIKSVASIGAPEPRLLTITPYDPNLLKTIERAIRDSDLGLNPQNDGKIIRLPIPELTEERRRELIRLV 118
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_CLAMS (Ribosome-recycling factor OS=Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) GN=frr PE=3 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 2.649e-27 Identity = 56/111 (50.45%), Postives = 82/111 (73.87%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVS-SDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660 D + RM + ++ V+ +F SVRTGR+NPA+ K+ VEYYGSP L +A +N P++ +L++ PYDK++LK IEKA+V+ +L T NDGE++R TLP+LT +RRKE K+V Sbjct: 9 DARDRMGKAVEAVKEDFGSVRTGRANPALFQKVMVEYYGSPTPLGQLASMNNPEARTLIVTPYDKTALKEIEKALVNVPNLSATVGNDGEMVRFTLPELTEDRRKEFVKIV 119
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_SYNAS (Ribosome-recycling factor OS=Syntrophus aciditrophicus (strain SB) GN=frr PE=3 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 3.459e-27 Identity = 56/112 (50.00%), Postives = 82/112 (73.21%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666 ++K ME+ + + +FN VRTGR++ ++LD I+ +YYG+P L +A ++ P+S +LI P+D S+L +IEKAI SDLG+ PNNDG+VIR+++P LT RRKEL KVV K Sbjct: 8 ELKQNMEKGLQALEKSFNKVRTGRASISLLDGIKADYYGTPTPLNQVATLSVPESRQILISPWDTSALNAIEKAIQKSDLGLVPNNDGKVIRISIPPLTEARRKELVKVVRK 119 The following BLAST results are available for this feature:
BLAST of CK939527 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CK939527 ID=CK939527; Name=CK939527; organism=Citrus sinensis; type=EST; length=671bpback to top |