CK939527

Overview
NameCK939527
Unique NameCK939527
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length671
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_LEPBJ (Ribosome-recycling factor OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=frr PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.553e-27
Identity = 54/109 (49.54%), Postives = 83/109 (76.15%), Query Frame = 1
Query:  334 VKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660
            +K +M++TID+V+ +F +VRTGR+NP++++ I V+YYG+   +  +  I+ P+   L+I PYDK  +K IEKAI +S LG+ P+NDG VIR+ +P+LT ERRKEL+K+V
Sbjct:   10 MKTKMDKTIDLVKKDFGTVRTGRANPSLVEDIRVDYYGTLTPINQLGNISVPEPRMLVISPYDKGIMKDIEKAIQASGLGLQPSNDGVVIRIIIPELTGERRKELAKIV 118          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_CLOK5 (Ribosome-recycling factor OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=frr PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.553e-27
Identity = 57/108 (52.78%), Postives = 82/108 (75.93%), Query Frame = 1
Query:  343 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666
            +M +T+D++     S++ GR+NPA+LDKIEVEYYG+   +  +A I+ P++  L IQP+DKS+LKSIEKAI+ SDLG+ P+NDGE+IRL +P+LT E RK + K + K
Sbjct:   12 KMNKTVDVLVKELASMKAGRANPAILDKIEVEYYGAMTPISQLAGISIPEARILAIQPWDKSALKSIEKAILKSDLGINPSNDGEIIRLIIPELTEETRKNIVKNIKK 119          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_CLOK1 (Ribosome-recycling factor OS=Clostridium kluyveri (strain NBRC 12016) GN=frr PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.553e-27
Identity = 57/108 (52.78%), Postives = 82/108 (75.93%), Query Frame = 1
Query:  343 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666
            +M +T+D++     S++ GR+NPA+LDKIEVEYYG+   +  +A I+ P++  L IQP+DKS+LKSIEKAI+ SDLG+ P+NDGE+IRL +P+LT E RK + K + K
Sbjct:   12 KMNKTVDVLVKELASMKAGRANPAILDKIEVEYYGAMTPISQLAGISIPEARILAIQPWDKSALKSIEKAILKSDLGINPSNDGEIIRLIIPELTEETRKNIVKNIKK 119          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_BREBN (Ribosome-recycling factor OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=frr PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.553e-27
Identity = 54/112 (48.21%), Postives = 84/112 (75.00%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666
            D++ RM + I+ ++ + +S+R GR+NPAMLD++ V+YYG+P  +  +A I+ P+   L IQP+DK++LK I++A+  SDLG++P+NDG +IRL +P LT ERRKEL K+  K
Sbjct:    8 DMEDRMNKAINALKRDLSSLRAGRANPAMLDRVTVDYYGTPTPISQLANISVPEPRMLTIQPWDKTALKEIDRALQQSDLGISPSNDGVIIRLIIPPLTEERRKELVKLAGK 119          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_KOCRD (Ribosome-recycling factor OS=Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201) GN=frr PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.028e-27
Identity = 55/110 (50.00%), Postives = 78/110 (70.91%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660
            D   RM + +D  +T+F++VRTGR+NPA+   + V YYG+P  L+ +A   TP++ +LLI PYD+S+L  IEKA+  SD+G  P NDG VIR+ +P+LT ERRKE  K+V
Sbjct:    8 DATTRMGKAVDAAKTDFSTVRTGRANPALFSSLLVAYYGTPTPLQQLASFQTPEARTLLITPYDRSALNDIEKALRDSDIGANPANDGNVIRVVMPELTEERRKEYVKIV 117          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_GEOKA (Ribosome-recycling factor OS=Geobacillus kaustophilus GN=frr PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.028e-27
Identity = 54/110 (49.09%), Postives = 81/110 (73.64%), Query Frame = 1
Query:  337 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666
            K +M++ +        S+R GR+N  +L+K+ V+YYG P  +  +A I+ P++  L+IQPYDKS++K +EKAI++SDLG+TP+NDG VIRL +P LT ERR+EL+K+V K
Sbjct:   10 KEKMDKAVQAFTRELASIRAGRANAGLLEKVTVDYYGVPTPINQLASISVPEARLLVIQPYDKSAIKEMEKAILASDLGLTPSNDGSVIRLVIPPLTEERRRELAKLVKK 119          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_BACHD (Ribosome-recycling factor OS=Bacillus halodurans GN=frr PE=3 SV=3)

HSP 1 Score: 122.479 bits (306), Expect = 2.028e-27
Identity = 57/112 (50.89%), Postives = 81/112 (72.32%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666
            D + RM +  + +      +R GR+NPAMLD+I VEYYG+   L  +A I+ P++  L+IQP+DKSS+  IE+AI  SDLG+TP+NDG VIR+T+P LT ERR++L+K+V K
Sbjct:    8 DAEQRMTKATEALGRELAKLRAGRANPAMLDRITVEYYGAETPLNQLATISVPEARLLVIQPFDKSSISDIERAIQKSDLGLTPSNDGTVIRITIPPLTEERRRDLTKLVKK 119          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_RUBXD (Ribosome-recycling factor OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=frr PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.649e-27
Identity = 57/110 (51.82%), Postives = 82/110 (74.55%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660
            D + RM+  ++ VR  F ++RTGR+NPA+LD+IEVE YG+ + +KS+A I  P+   L I PYD + LK+IE+AI  SDLG+ P NDG++IRL +P+LT ERR+EL ++V
Sbjct:    9 DAERRMKGALEAVRHQFATIRTGRANPALLDRIEVEAYGTRMPIKSVASIGAPEPRLLTITPYDPNLLKTIERAIRDSDLGLNPQNDGKIIRLPIPELTEERRRELIRLV 118          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_CLAMS (Ribosome-recycling factor OS=Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) GN=frr PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.649e-27
Identity = 56/111 (50.45%), Postives = 82/111 (73.87%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVS-SDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660
            D + RM + ++ V+ +F SVRTGR+NPA+  K+ VEYYGSP  L  +A +N P++ +L++ PYDK++LK IEKA+V+  +L  T  NDGE++R TLP+LT +RRKE  K+V
Sbjct:    9 DARDRMGKAVEAVKEDFGSVRTGRANPALFQKVMVEYYGSPTPLGQLASMNNPEARTLIVTPYDKTALKEIEKALVNVPNLSATVGNDGEMVRFTLPELTEDRRKEFVKIV 119          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_SYNAS (Ribosome-recycling factor OS=Syntrophus aciditrophicus (strain SB) GN=frr PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.459e-27
Identity = 56/112 (50.00%), Postives = 82/112 (73.21%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666
            ++K  ME+ +  +  +FN VRTGR++ ++LD I+ +YYG+P  L  +A ++ P+S  +LI P+D S+L +IEKAI  SDLG+ PNNDG+VIR+++P LT  RRKEL KVV K
Sbjct:    8 ELKQNMEKGLQALEKSFNKVRTGRASISLLDGIKADYYGTPTPLNQVATLSVPESRQILISPWDTSALNAIEKAIQKSDLGLVPNNDGKVIRISIPPLTEARRKELVKVVRK 119          
The following BLAST results are available for this feature:
BLAST of CK939527 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_LEPBJ1.553e-2749.54Ribosome-recycling factor OS=Leptospira borgpeters... [more]
RRF_CLOK51.553e-2752.78Ribosome-recycling factor OS=Clostridium kluyveri ... [more]
RRF_CLOK11.553e-2752.78Ribosome-recycling factor OS=Clostridium kluyveri ... [more]
RRF_BREBN1.553e-2748.21Ribosome-recycling factor OS=Brevibacillus brevis ... [more]
RRF_KOCRD2.028e-2750.00Ribosome-recycling factor OS=Kocuria rhizophila (s... [more]
RRF_GEOKA2.028e-2749.09Ribosome-recycling factor OS=Geobacillus kaustophi... [more]
RRF_BACHD2.028e-2750.89Ribosome-recycling factor OS=Bacillus halodurans G... [more]
RRF_RUBXD2.649e-2751.82Ribosome-recycling factor OS=Rubrobacter xylanophi... [more]
RRF_CLAMS2.649e-2750.45Ribosome-recycling factor OS=Clavibacter michigane... [more]
RRF_SYNAS3.459e-2750.00Ribosome-recycling factor OS=Syntrophus aciditroph... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004749_D04 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IF_D04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939527 ID=CK939527; Name=CK939527; organism=Citrus sinensis; type=EST; length=671bp
GCGGGGAACTANNNTCTTAAGTCTGAGCGAGCGTTCATGGCCACGCACTT
TTCTTCAACAGGGCCCATGCGGTCCATTTTCCAACTGAAATCAAATCCTC
CCAAATGCCTCCTTTTCCTCCCTGATTCTTGTCATAGAAGAGCCGAAACT
GCCACGTGCCGTGCTAGCAGCGTTAGTGTGCGCCAGTGGAGCTCAGCTGC
AAACTACTCTAGACTTGTGAAATTATCCAACAAACCTATCGTTGTAAGAC
AACTGGCACACAAGAGAAATGGAGTTGTGAGGTGTGCAACTATTGAAGAA
ATTGAAGCGGAAAAATCTTCCATTGAGAAGGATGTTAAAGCTAGGATGGA
AAGGACTATCGATATGGTCCGAACCAATTTCAATTCCGTGAGGACAGGAA
GATCGAATCCAGCTATGCTAGATAAGATTGAGGTGGAATACTATGGAAGC
CCAGTAAGTTTGAAGAGCATAGCTCAAATCAATACCCCTGATTCAAGTTC
TCTATTGATTCAACCATATGACAAATCCAGCTTAAAGTCTATAGAGAAGG
CCATAGTAAGCTCTGATCTTGGCATGACCCCAAACAATGATGGTGAAGTC
ATACGGTTAACCCTTCCTCAATTGACATCCGAAAGGAGGAAGGAACTGTC
AAAGGTTGTGGCCAAACAGGC
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