CK939527

Overview
NameCK939527
Unique NameCK939527
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length671
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_LACS1 (Ribosome-recycling factor OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=frr PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.518e-27
Identity = 56/110 (50.91%), Postives = 81/110 (73.64%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660
            + + +M +  D +R    ++R GR+N ++L++I VEYYG+P  L  +AQI+ P++  LL+ PYDK+SLK+IE AI++SDLG+ P NDG  IRL +PQLT ERRKEL+K V
Sbjct:   10 EAQEKMTKAEDSLRRELGNIRAGRANASLLNRINVEYYGAPTPLNQMAQISVPEARVLLVTPYDKTSLKNIEHAIMASDLGIAPMNDGTAIRLVIPQLTEERRKELAKQV 119          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_FINM2 (Ribosome-recycling factor OS=Finegoldia magna (strain ATCC 29328) GN=frr PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.518e-27
Identity = 56/110 (50.91%), Postives = 82/110 (74.55%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660
            D++ + ++T+  ++    +VR GR+NP++LD I VEYYG+   LK +A I+ P++  L IQP+DKS +K IEK I +S+LG+TP+NDG +IRL  PQLT +RRKEL+KVV
Sbjct:    8 DMETKADKTLHALKEELKTVRAGRANPSILDNIMVEYYGTSTPLKQVATISAPEARLLTIQPWDKSIMKEIEKQIQASNLGITPSNDGTIIRLPFPQLTEDRRKELTKVV 117          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_SYMTH (Ribosome-recycling factor OS=Symbiobacterium thermophilum GN=frr PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.901e-27
Identity = 55/113 (48.67%), Postives = 84/113 (74.34%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669
            D + RM++ +++ R     +R  R+ PA+LDK+ VE YGS V + ++A I  PD  +L+I+P+D+S +K+IE+AI +SDLG+ P NDG+VIRL++P +T ERR+EL KVVAK+
Sbjct:    8 DAEERMKKAVEVFRQELAGMRANRATPALLDKVRVEAYGSEVPVNNVATIEVPDPRTLVIKPWDRSLIKAIERAINASDLGLNPTNDGQVIRLSIPPMTEERRRELVKVVAKR 120          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_LISW6 (Ribosome-recycling factor OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=frr PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.901e-27
Identity = 55/111 (49.55%), Postives = 80/111 (72.07%), Query Frame = 1
Query:  337 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669
            K +M++    +     ++R GR+N ++LD++ V+YYG+P  +  +A I+ P++  LLI PYDK+ L  IEKAI+ SDLG+TPNNDG V+RL++PQLT ERRKEL K V K+
Sbjct:   10 KEKMDKAEQALTRQLGTIRAGRANASLLDRLSVDYYGAPTPVNQMASISVPEARMLLITPYDKTVLGEIEKAILKSDLGLTPNNDGSVLRLSIPQLTEERRKELVKEVKKE 120          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_ENTFA (Ribosome-recycling factor OS=Enterococcus faecalis GN=frr PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.901e-27
Identity = 55/111 (49.55%), Postives = 80/111 (72.07%), Query Frame = 1
Query:  337 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669
            K +M +  + +R     +R GR+N ++LD+I+VEYYG+P  +  +A IN P++  L+I P+DK+S+  IEKAI  SD+G++P NDG VIRL +PQLT ERRKEL+K V K+
Sbjct:   10 KEKMTKAEESLRRELGQIRAGRANASLLDRIQVEYYGAPTPVNQLASINIPEARVLMITPFDKNSIADIEKAIQMSDIGISPTNDGNVIRLVIPQLTEERRKELAKDVKKE 120          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_CLONN (Ribosome-recycling factor OS=Clostridium novyi (strain NT) GN=frr PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.901e-27
Identity = 54/108 (50.00%), Postives = 82/108 (75.93%), Query Frame = 1
Query:  343 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666
            +M ++I +++ +  S++ G++NPAMLD++ VEYYGS   +  +A +++P+   LLIQP+DK+SLK IEKAI+ SDLG+ P+NDG VIRL +P+LT E RK++ K V K
Sbjct:   12 KMLKSISVLKKDLGSMKAGKANPAMLDRVNVEYYGSETPINQLANVSSPEPRVLLIQPWDKNSLKDIEKAILQSDLGLNPSNDGSVIRLIIPELTEETRKDIVKKVKK 119          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_CLOPH (Ribosome-recycling factor OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=frr PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.707e-27
Identity = 50/111 (45.05%), Postives = 86/111 (77.48%), Query Frame = 1
Query:  337 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669
            + +M++++D ++  +  +R GR+NP +LDK+ V+YYG+P +++++A ++ P++  + IQP++   +K IEKAI++SDLG+TP+NDG+VIRL  P+LT ERRK+L K V K+
Sbjct:    9 EGKMQKSLDSLKEEYVGIRAGRANPHLLDKLRVDYYGTPSAIQAVANVSVPEARVIQIQPWEAKLIKEIEKAIIASDLGLTPSNDGKVIRLVFPELTEERRKDLVKDVKKK 119          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_CLOAB (Ribosome-recycling factor OS=Clostridium acetobutylicum GN=frr PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.707e-27
Identity = 55/112 (49.11%), Postives = 83/112 (74.11%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666
            +++ +M ++I  ++    S++ GR+NPAMLD+IEV+YYG+   L  +A I+ P+S  L+IQP+DKS++KSIEKAI+ SDLG+ P+NDG  +RL +P+LT E RK + K V K
Sbjct:    8 ELEEKMTKSISALKKELTSMKAGRANPAMLDRIEVDYYGTMTPLNQLANISVPESRVLMIQPWDKSAMKSIEKAILISDLGLNPSNDGTTMRLVIPELTEETRKNIVKNVKK 119          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_BACA2 (Ribosome-recycling factor OS=Bacillus amyloliquefaciens (strain FZB42) GN=frr PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.707e-27
Identity = 55/110 (50.00%), Postives = 78/110 (70.91%), Query Frame = 1
Query:  337 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666
            K RME+ +        SVR GR+NP++LDK+ VEYYG+   L  ++ IN P++  L++ PYDK+++  IEKAI+ +DLG+TP +DG +IR+ +P LT ERRKEL KVV K
Sbjct:   10 KERMEKAVAAYSRELASVRAGRANPSLLDKVTVEYYGAQTPLNQLSSINVPEARMLVVTPYDKTAIGDIEKAILKADLGVTPTSDGTIIRIAIPALTEERRKELVKVVKK 119          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_MOOTA (Ribosome-recycling factor OS=Moorella thermoacetica (strain ATCC 39073) GN=frr PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.007e-26
Identity = 53/113 (46.90%), Postives = 85/113 (75.22%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669
            + + +M++ ++ +R    S+R GR+NPA+L+K+ V YYG+P  +  +A +++P++  L+IQP+D++ L  IEKAI+ SDLG+TP++DG VIR+T+PQLT ERR EL KV  K+
Sbjct:    8 EAEEKMKKAVEGLRRELASLRAGRANPALLEKVLVSYYGTPTPVNQLATVSSPEARLLVIQPWDRNILPEIEKAILKSDLGLTPSSDGTVIRITIPQLTEERRSELVKVARKK 120          
The following BLAST results are available for this feature:
BLAST of CK939527 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_LACS14.518e-2750.91Ribosome-recycling factor OS=Lactobacillus salivar... [more]
RRF_FINM24.518e-2750.91Ribosome-recycling factor OS=Finegoldia magna (str... [more]
RRF_SYMTH5.901e-2748.67Ribosome-recycling factor OS=Symbiobacterium therm... [more]
RRF_LISW65.901e-2749.55Ribosome-recycling factor OS=Listeria welshimeri s... [more]
RRF_ENTFA5.901e-2749.55Ribosome-recycling factor OS=Enterococcus faecalis... [more]
RRF_CLONN5.901e-2750.00Ribosome-recycling factor OS=Clostridium novyi (st... [more]
RRF_CLOPH7.707e-2745.05Ribosome-recycling factor OS=Clostridium phytoferm... [more]
RRF_CLOAB7.707e-2749.11Ribosome-recycling factor OS=Clostridium acetobuty... [more]
RRF_BACA27.707e-2750.00Ribosome-recycling factor OS=Bacillus amyloliquefa... [more]
RRF_MOOTA1.007e-2646.90Ribosome-recycling factor OS=Moorella thermoacetic... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004749_D04 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IF_D04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939527 ID=CK939527; Name=CK939527; organism=Citrus sinensis; type=EST; length=671bp
GCGGGGAACTANNNTCTTAAGTCTGAGCGAGCGTTCATGGCCACGCACTT
TTCTTCAACAGGGCCCATGCGGTCCATTTTCCAACTGAAATCAAATCCTC
CCAAATGCCTCCTTTTCCTCCCTGATTCTTGTCATAGAAGAGCCGAAACT
GCCACGTGCCGTGCTAGCAGCGTTAGTGTGCGCCAGTGGAGCTCAGCTGC
AAACTACTCTAGACTTGTGAAATTATCCAACAAACCTATCGTTGTAAGAC
AACTGGCACACAAGAGAAATGGAGTTGTGAGGTGTGCAACTATTGAAGAA
ATTGAAGCGGAAAAATCTTCCATTGAGAAGGATGTTAAAGCTAGGATGGA
AAGGACTATCGATATGGTCCGAACCAATTTCAATTCCGTGAGGACAGGAA
GATCGAATCCAGCTATGCTAGATAAGATTGAGGTGGAATACTATGGAAGC
CCAGTAAGTTTGAAGAGCATAGCTCAAATCAATACCCCTGATTCAAGTTC
TCTATTGATTCAACCATATGACAAATCCAGCTTAAAGTCTATAGAGAAGG
CCATAGTAAGCTCTGATCTTGGCATGACCCCAAACAATGATGGTGAAGTC
ATACGGTTAACCCTTCCTCAATTGACATCCGAAAGGAGGAAGGAACTGTC
AAAGGTTGTGGCCAAACAGGC
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