CK939527
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_LACS1 (Ribosome-recycling factor OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=frr PE=3 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 4.518e-27 Identity = 56/110 (50.91%), Postives = 81/110 (73.64%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660 + + +M + D +R ++R GR+N ++L++I VEYYG+P L +AQI+ P++ LL+ PYDK+SLK+IE AI++SDLG+ P NDG IRL +PQLT ERRKEL+K V Sbjct: 10 EAQEKMTKAEDSLRRELGNIRAGRANASLLNRINVEYYGAPTPLNQMAQISVPEARVLLVTPYDKTSLKNIEHAIMASDLGIAPMNDGTAIRLVIPQLTEERRKELAKQV 119
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_FINM2 (Ribosome-recycling factor OS=Finegoldia magna (strain ATCC 29328) GN=frr PE=3 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 4.518e-27 Identity = 56/110 (50.91%), Postives = 82/110 (74.55%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660 D++ + ++T+ ++ +VR GR+NP++LD I VEYYG+ LK +A I+ P++ L IQP+DKS +K IEK I +S+LG+TP+NDG +IRL PQLT +RRKEL+KVV Sbjct: 8 DMETKADKTLHALKEELKTVRAGRANPSILDNIMVEYYGTSTPLKQVATISAPEARLLTIQPWDKSIMKEIEKQIQASNLGITPSNDGTIIRLPFPQLTEDRRKELTKVV 117
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_SYMTH (Ribosome-recycling factor OS=Symbiobacterium thermophilum GN=frr PE=3 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 5.901e-27 Identity = 55/113 (48.67%), Postives = 84/113 (74.34%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669 D + RM++ +++ R +R R+ PA+LDK+ VE YGS V + ++A I PD +L+I+P+D+S +K+IE+AI +SDLG+ P NDG+VIRL++P +T ERR+EL KVVAK+ Sbjct: 8 DAEERMKKAVEVFRQELAGMRANRATPALLDKVRVEAYGSEVPVNNVATIEVPDPRTLVIKPWDRSLIKAIERAINASDLGLNPTNDGQVIRLSIPPMTEERRRELVKVVAKR 120
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_LISW6 (Ribosome-recycling factor OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=frr PE=3 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 5.901e-27 Identity = 55/111 (49.55%), Postives = 80/111 (72.07%), Query Frame = 1 Query: 337 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669 K +M++ + ++R GR+N ++LD++ V+YYG+P + +A I+ P++ LLI PYDK+ L IEKAI+ SDLG+TPNNDG V+RL++PQLT ERRKEL K V K+ Sbjct: 10 KEKMDKAEQALTRQLGTIRAGRANASLLDRLSVDYYGAPTPVNQMASISVPEARMLLITPYDKTVLGEIEKAILKSDLGLTPNNDGSVLRLSIPQLTEERRKELVKEVKKE 120
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_ENTFA (Ribosome-recycling factor OS=Enterococcus faecalis GN=frr PE=3 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 5.901e-27 Identity = 55/111 (49.55%), Postives = 80/111 (72.07%), Query Frame = 1 Query: 337 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669 K +M + + +R +R GR+N ++LD+I+VEYYG+P + +A IN P++ L+I P+DK+S+ IEKAI SD+G++P NDG VIRL +PQLT ERRKEL+K V K+ Sbjct: 10 KEKMTKAEESLRRELGQIRAGRANASLLDRIQVEYYGAPTPVNQLASINIPEARVLMITPFDKNSIADIEKAIQMSDIGISPTNDGNVIRLVIPQLTEERRKELAKDVKKE 120
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_CLONN (Ribosome-recycling factor OS=Clostridium novyi (strain NT) GN=frr PE=3 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 5.901e-27 Identity = 54/108 (50.00%), Postives = 82/108 (75.93%), Query Frame = 1 Query: 343 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666 +M ++I +++ + S++ G++NPAMLD++ VEYYGS + +A +++P+ LLIQP+DK+SLK IEKAI+ SDLG+ P+NDG VIRL +P+LT E RK++ K V K Sbjct: 12 KMLKSISVLKKDLGSMKAGKANPAMLDRVNVEYYGSETPINQLANVSSPEPRVLLIQPWDKNSLKDIEKAILQSDLGLNPSNDGSVIRLIIPELTEETRKDIVKKVKK 119
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_CLOPH (Ribosome-recycling factor OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=frr PE=3 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 7.707e-27 Identity = 50/111 (45.05%), Postives = 86/111 (77.48%), Query Frame = 1 Query: 337 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669 + +M++++D ++ + +R GR+NP +LDK+ V+YYG+P +++++A ++ P++ + IQP++ +K IEKAI++SDLG+TP+NDG+VIRL P+LT ERRK+L K V K+ Sbjct: 9 EGKMQKSLDSLKEEYVGIRAGRANPHLLDKLRVDYYGTPSAIQAVANVSVPEARVIQIQPWEAKLIKEIEKAIIASDLGLTPSNDGKVIRLVFPELTEERRKDLVKDVKKK 119
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_CLOAB (Ribosome-recycling factor OS=Clostridium acetobutylicum GN=frr PE=3 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 7.707e-27 Identity = 55/112 (49.11%), Postives = 83/112 (74.11%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666 +++ +M ++I ++ S++ GR+NPAMLD+IEV+YYG+ L +A I+ P+S L+IQP+DKS++KSIEKAI+ SDLG+ P+NDG +RL +P+LT E RK + K V K Sbjct: 8 ELEEKMTKSISALKKELTSMKAGRANPAMLDRIEVDYYGTMTPLNQLANISVPESRVLMIQPWDKSAMKSIEKAILISDLGLNPSNDGTTMRLVIPELTEETRKNIVKNVKK 119
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_BACA2 (Ribosome-recycling factor OS=Bacillus amyloliquefaciens (strain FZB42) GN=frr PE=3 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 7.707e-27 Identity = 55/110 (50.00%), Postives = 78/110 (70.91%), Query Frame = 1 Query: 337 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666 K RME+ + SVR GR+NP++LDK+ VEYYG+ L ++ IN P++ L++ PYDK+++ IEKAI+ +DLG+TP +DG +IR+ +P LT ERRKEL KVV K Sbjct: 10 KERMEKAVAAYSRELASVRAGRANPSLLDKVTVEYYGAQTPLNQLSSINVPEARMLVVTPYDKTAIGDIEKAILKADLGVTPTSDGTIIRIAIPALTEERRKELVKVVKK 119
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_MOOTA (Ribosome-recycling factor OS=Moorella thermoacetica (strain ATCC 39073) GN=frr PE=3 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 1.007e-26 Identity = 53/113 (46.90%), Postives = 85/113 (75.22%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669 + + +M++ ++ +R S+R GR+NPA+L+K+ V YYG+P + +A +++P++ L+IQP+D++ L IEKAI+ SDLG+TP++DG VIR+T+PQLT ERR EL KV K+ Sbjct: 8 EAEEKMKKAVEGLRRELASLRAGRANPALLEKVLVSYYGTPTPVNQLATVSSPEARLLVIQPWDRNILPEIEKAILKSDLGLTPSSDGTVIRITIPQLTEERRSELVKVARKK 120 The following BLAST results are available for this feature:
BLAST of CK939527 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CK939527 ID=CK939527; Name=CK939527; organism=Citrus sinensis; type=EST; length=671bpback to top |