CK939527

Overview
NameCK939527
Unique NameCK939527
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length671
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_DESHY (Ribosome-recycling factor OS=Desulfitobacterium hafniense (strain Y51) GN=frr PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.315e-26
Identity = 56/113 (49.56%), Postives = 81/113 (71.68%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669
            + + RM + ++ ++  + ++R GR+NP MLDKI VEYYG+   +  +A I+ P+   L IQP+DKSSL  IEKAI+ SDLG+ P++DG VIRL +PQLT+ERR E+ K V K+
Sbjct:    8 EAEDRMVKAVEALKREYATIRAGRANPNMLDKITVEYYGTQTPVNQLANISVPEPRMLTIQPWDKSSLPMIEKAILKSDLGLNPSSDGTVIRLLIPQLTAERRTEIVKTVKKK 120          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_DESHD (Ribosome-recycling factor OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=frr PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.315e-26
Identity = 56/113 (49.56%), Postives = 81/113 (71.68%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669
            + + RM + ++ ++  + ++R GR+NP MLDKI VEYYG+   +  +A I+ P+   L IQP+DKSSL  IEKAI+ SDLG+ P++DG VIRL +PQLT+ERR E+ K V K+
Sbjct:    8 EAEDRMVKAVEALKREYATIRAGRANPNMLDKITVEYYGTQTPVNQLANISVPEPRMLTIQPWDKSSLPMIEKAILKSDLGLNPSSDGTVIRLLIPQLTAERRTEIVKTVKKK 120          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_CLOBK (Ribosome-recycling factor OS=Clostridium botulinum (strain Okra / Type B1) GN=frr PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.315e-26
Identity = 57/108 (52.78%), Postives = 78/108 (72.22%), Query Frame = 1
Query:  343 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666
            +M +TI  ++    S++ GR+NPAMLD+IE EYYGS   L  +  I+ P++  LLIQP+DKS+L +IEKAI+ SDLG+ P+NDG VIRL +P+LT E RK + K V K
Sbjct:   12 KMGKTIVALKRELASMKAGRANPAMLDRIEAEYYGSMTPLNQLGNISVPEARVLLIQPWDKSALSAIEKAILKSDLGLNPSNDGTVIRLVIPELTEETRKNIVKTVKK 119          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_CLOBJ (Ribosome-recycling factor OS=Clostridium botulinum (strain Kyoto / Type A2) GN=frr PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.315e-26
Identity = 57/108 (52.78%), Postives = 78/108 (72.22%), Query Frame = 1
Query:  343 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666
            +M +TI  ++    S++ GR+NPAMLD+IE EYYGS   L  +  I+ P++  LLIQP+DKS+L +IEKAI+ SDLG+ P+NDG VIRL +P+LT E RK + K V K
Sbjct:   12 KMGKTIVALKRELASMKAGRANPAMLDRIEAEYYGSMTPLNQLGNISVPEARVLLIQPWDKSALSAIEKAILKSDLGLNPSNDGTVIRLVIPELTEETRKNIVKTVKK 119          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_CLOB6 (Ribosome-recycling factor OS=Clostridium botulinum (strain 657 / Type Ba4) GN=frr PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.315e-26
Identity = 57/108 (52.78%), Postives = 78/108 (72.22%), Query Frame = 1
Query:  343 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666
            +M +TI  ++    S++ GR+NPAMLD+IE EYYGS   L  +  I+ P++  LLIQP+DKS+L +IEKAI+ SDLG+ P+NDG VIRL +P+LT E RK + K V K
Sbjct:   12 KMGKTIVALKRELASMKAGRANPAMLDRIEAEYYGSMTPLNQLGNISVPEARVLLIQPWDKSALSAIEKAILKSDLGLNPSNDGTVIRLVIPELTEETRKNIVKTVKK 119          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_BACSU (Ribosome-recycling factor OS=Bacillus subtilis GN=frr PE=1 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.315e-26
Identity = 55/110 (50.00%), Postives = 79/110 (71.82%), Query Frame = 1
Query:  337 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666
            K +ME+ I   +    +VR GR+NP++LDK+ VEYYG+   L  ++ IN P++  L+I PYDK+++  IEKAI+ +DLG+TP +DG +IR+ +P LT ERRKEL KVV K
Sbjct:   10 KEKMEKAIAAYQRELATVRAGRANPSLLDKVTVEYYGAQTPLNQLSSINVPEARMLVITPYDKTAIGDIEKAILKADLGLTPTSDGNMIRIAIPALTEERRKELVKVVKK 119          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_THETN (Ribosome-recycling factor OS=Thermoanaerobacter tengcongensis GN=frr PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.717e-26
Identity = 55/113 (48.67%), Postives = 83/113 (73.45%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669
            D + RM++T++++++   ++R GR+NPA+LD+I V YYG+P  L  +A I  P+   L++QP+D S +  IEKAI  SDLG+ P +DG+V+RL LP+LT ERRKEL K+V K+
Sbjct:    7 DSEERMKKTLNVLKSELAAIRAGRANPALLDRITVNYYGTPTPLNRLATITAPEPRVLVVQPWDVSQIGEIEKAIQKSDLGINPVSDGKVLRLVLPELTEERRKELVKLVHKK 119          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_STRU0 (Ribosome-recycling factor OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=frr PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.717e-26
Identity = 57/108 (52.78%), Postives = 77/108 (71.30%), Query Frame = 1
Query:  343 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666
            R E++   +   + S+R GR+N ++LD+I+VEYYG P  L  +A I  P++  LLI P+DKSS+K IE+AI +SDLG+TP NDG VIRL +P LT E RKEL+K V K
Sbjct:   12 RFEQSFQSLSREYASIRAGRANASLLDRIQVEYYGVPTPLNQLASITVPEARVLLISPFDKSSIKDIERAINASDLGITPANDGSVIRLVIPALTEETRKELAKEVKK 119          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_STRMU (Ribosome-recycling factor OS=Streptococcus mutans GN=frr PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.717e-26
Identity = 58/110 (52.73%), Postives = 76/110 (69.09%), Query Frame = 1
Query:  337 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666
            K R E++   +   F S+R GR+N ++LD+IEVEYYG P  L  +A I  P++  LL+ P+DKSSLK IE AI +SD+G+ P NDG VIRL +P LT E RKEL+K V K
Sbjct:   10 KERFEQSHQSLAREFGSIRAGRANASLLDRIEVEYYGVPTPLNQLASITVPEARVLLVSPFDKSSLKDIEHAINASDIGINPANDGSVIRLVIPALTEETRKELAKEVKK 119          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_OENOB (Ribosome-recycling factor OS=Oenococcus oeni (strain BAA-331 / PSU-1) GN=frr PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.717e-26
Identity = 57/110 (51.82%), Postives = 78/110 (70.91%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVV 660
            +VK RM +     +    ++R GR+NP +L+KI+VEYYG+P  L  +A +  P++  LLI PYDK+SLK+IE+AI +SDLG+TP NDG  IRL +PQLT + RKEL K V
Sbjct:    6 EVKERMGKVSKAFQNELINIRAGRANPNILNKIQVEYYGAPTPLNQLASVQIPEARVLLITPYDKTSLKAIEQAIFASDLGLTPQNDGSAIRLIIPQLTEDSRKELVKQV 115          
The following BLAST results are available for this feature:
BLAST of CK939527 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_DESHY1.315e-2649.56Ribosome-recycling factor OS=Desulfitobacterium ha... [more]
RRF_DESHD1.315e-2649.56Ribosome-recycling factor OS=Desulfitobacterium ha... [more]
RRF_CLOBK1.315e-2652.78Ribosome-recycling factor OS=Clostridium botulinum... [more]
RRF_CLOBJ1.315e-2652.78Ribosome-recycling factor OS=Clostridium botulinum... [more]
RRF_CLOB61.315e-2652.78Ribosome-recycling factor OS=Clostridium botulinum... [more]
RRF_BACSU1.315e-2650.00Ribosome-recycling factor OS=Bacillus subtilis GN=... [more]
RRF_THETN1.717e-2648.67Ribosome-recycling factor OS=Thermoanaerobacter te... [more]
RRF_STRU01.717e-2652.78Ribosome-recycling factor OS=Streptococcus uberis ... [more]
RRF_STRMU1.717e-2652.73Ribosome-recycling factor OS=Streptococcus mutans ... [more]
RRF_OENOB1.717e-2651.82Ribosome-recycling factor OS=Oenococcus oeni (stra... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004749_D04 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IF_D04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939527 ID=CK939527; Name=CK939527; organism=Citrus sinensis; type=EST; length=671bp
GCGGGGAACTANNNTCTTAAGTCTGAGCGAGCGTTCATGGCCACGCACTT
TTCTTCAACAGGGCCCATGCGGTCCATTTTCCAACTGAAATCAAATCCTC
CCAAATGCCTCCTTTTCCTCCCTGATTCTTGTCATAGAAGAGCCGAAACT
GCCACGTGCCGTGCTAGCAGCGTTAGTGTGCGCCAGTGGAGCTCAGCTGC
AAACTACTCTAGACTTGTGAAATTATCCAACAAACCTATCGTTGTAAGAC
AACTGGCACACAAGAGAAATGGAGTTGTGAGGTGTGCAACTATTGAAGAA
ATTGAAGCGGAAAAATCTTCCATTGAGAAGGATGTTAAAGCTAGGATGGA
AAGGACTATCGATATGGTCCGAACCAATTTCAATTCCGTGAGGACAGGAA
GATCGAATCCAGCTATGCTAGATAAGATTGAGGTGGAATACTATGGAAGC
CCAGTAAGTTTGAAGAGCATAGCTCAAATCAATACCCCTGATTCAAGTTC
TCTATTGATTCAACCATATGACAAATCCAGCTTAAAGTCTATAGAGAAGG
CCATAGTAAGCTCTGATCTTGGCATGACCCCAAACAATGATGGTGAAGTC
ATACGGTTAACCCTTCCTCAATTGACATCCGAAAGGAGGAAGGAACTGTC
AAAGGTTGTGGCCAAACAGGC
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