CK939527

Overview
NameCK939527
Unique NameCK939527
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length671
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_CLOTE (Ribosome-recycling factor OS=Clostridium tetani GN=frr PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.717e-26
Identity = 56/108 (51.85%), Postives = 79/108 (73.15%), Query Frame = 1
Query:  343 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666
            +M + +  ++ +  S++ GR+NPAMLDKIE EYYG+   L  +A I+ P++  L IQP+DKSSLK+IEKAI+ SDLG+ PNNDG +IRL +P+LT E R+ + K V K
Sbjct:   12 KMSKALLALKKDLASLKAGRANPAMLDKIEAEYYGTMTPLSQLANISVPEARILQIQPWDKSSLKAIEKAILVSDLGLNPNNDGTIIRLIIPELTEETRRNIVKTVKK 119          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_CLOBL (Ribosome-recycling factor OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=frr PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.717e-26
Identity = 57/108 (52.78%), Postives = 78/108 (72.22%), Query Frame = 1
Query:  343 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666
            +M +TI  ++    S++ GR+NPAMLD+IE EYYGS   L  +  I+ P++  LLIQP+DKS+L +IEKAI+ SDLG+ P+NDG VIRL +P+LT E RK + K V K
Sbjct:   12 KMGKTIVALKRELASMKAGRANPAMLDRIEAEYYGSMTPLNQLGNISIPEARVLLIQPWDKSALSAIEKAILKSDLGLNPSNDGTVIRLVIPELTEETRKNIVKTVKK 119          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_LISMO (Ribosome-recycling factor OS=Listeria monocytogenes GN=frr PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.242e-26
Identity = 55/111 (49.55%), Postives = 79/111 (71.17%), Query Frame = 1
Query:  337 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669
            K +ME+    +     ++R GR+N ++LD++ V+YYG+   +  +A I+ P++  LLI PYDK+ L  IEKAI+ SDLG+TPNNDG V+RL++PQLT ERRKEL K V K+
Sbjct:   10 KEKMEKAEQALTRQLGTIRAGRANASLLDRLSVDYYGAATPVNQMASISVPEARMLLITPYDKTILGEIEKAILKSDLGLTPNNDGSVLRLSIPQLTEERRKELVKEVKKE 120          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_LISMH (Ribosome-recycling factor OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=frr PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.242e-26
Identity = 55/111 (49.55%), Postives = 79/111 (71.17%), Query Frame = 1
Query:  337 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669
            K +ME+    +     ++R GR+N ++LD++ V+YYG+   +  +A I+ P++  LLI PYDK+ L  IEKAI+ SDLG+TPNNDG V+RL++PQLT ERRKEL K V K+
Sbjct:   10 KEKMEKAEQALTRQLGTIRAGRANASLLDRLSVDYYGAATPVNQMASISVPEARMLLITPYDKTILGEIEKAILKSDLGLTPNNDGSVLRLSIPQLTEERRKELVKEVKKE 120          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_LISMF (Ribosome-recycling factor OS=Listeria monocytogenes serotype 4b (strain F2365) GN=frr PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.242e-26
Identity = 55/111 (49.55%), Postives = 79/111 (71.17%), Query Frame = 1
Query:  337 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669
            K +ME+    +     ++R GR+N ++LD++ V+YYG+   +  +A I+ P++  LLI PYDK+ L  IEKAI+ SDLG+TPNNDG V+RL++PQLT ERRKEL K V K+
Sbjct:   10 KEKMEKAEQALTRQLGTIRAGRANASLLDRLSVDYYGAATPVNQMASISVPEARMLLITPYDKTILGEIEKAILKSDLGLTPNNDGSVLRLSIPQLTEERRKELVKEVKKE 120          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_LISMC (Ribosome-recycling factor OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=frr PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.242e-26
Identity = 55/111 (49.55%), Postives = 79/111 (71.17%), Query Frame = 1
Query:  337 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669
            K +ME+    +     ++R GR+N ++LD++ V+YYG+   +  +A I+ P++  LLI PYDK+ L  IEKAI+ SDLG+TPNNDG V+RL++PQLT ERRKEL K V K+
Sbjct:   10 KEKMEKAEQALTRQLGTIRAGRANASLLDRLSVDYYGAATPVNQMASISVPEARMLLITPYDKTILGEIEKAILKSDLGLTPNNDGSVLRLSIPQLTEERRKELVKEVKKE 120          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_BIFAA (Ribosome-recycling factor OS=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083) GN=frr PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.242e-26
Identity = 52/107 (48.60%), Postives = 78/107 (72.90%), Query Frame = 1
Query:  337 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKV 657
            KA+M ++++  + NF+ +RTGR+NPA+L+ I V+YYG+P  LK++A I  P+  +L + P+D S   ++EKA+  SDLG +P  DG VIRLT+P+LT ERRKE  K+
Sbjct:    9 KAQMAKSVESTKENFSGIRTGRANPALLNGITVDYYGAPTPLKAVATIGVPEPRTLAVTPFDASQANAVEKALRDSDLGASPRRDGNVIRLTMPELTEERRKEYVKI 115          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_BDEBA (Ribosome-recycling factor OS=Bdellovibrio bacteriovorus GN=frr PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.242e-26
Identity = 57/112 (50.89%), Postives = 80/112 (71.43%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666
            + +A+ME+T++ +      VRTGR+  +MLD I V YYG+P  L  +A I+TPD+ S LI P++ + LK IE+AI+ S+LGM P NDG+VIRL +P LT ERRK+L+K V K
Sbjct:    9 NAQAKMEKTLNSLSEELKKVRTGRAQVSMLDGIRVNYYGTPSPLSQVASISTPDAKSFLIAPWEVAILKDIEQAIIKSELGMAPMNDGKVIRLKVPDLTEERRKDLAKQVKK 120          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_MYCA9 (Ribosome-recycling factor OS=Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) GN=frr PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.929e-26
Identity = 49/108 (45.37%), Postives = 80/108 (74.07%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSK 654
            D + +ME+ + + R +F ++RTGR+NP M  ++ ++YYG+P  +  +A IN P++  ++I+PY+ + LK+IE AI +SDLG+ P+NDG +IR+ +PQLT ERR+EL K
Sbjct:    8 DAEEKMEKAVTVARDDFATIRTGRANPGMFQRVVIDYYGTPTPITQVAGINVPEARMVVIKPYESNQLKAIEDAIRNSDLGLNPSNDGSIIRVAIPQLTEERRRELVK 115          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_LISIN (Ribosome-recycling factor OS=Listeria innocua GN=frr PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.929e-26
Identity = 55/111 (49.55%), Postives = 79/111 (71.17%), Query Frame = 1
Query:  337 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669
            K +ME+    +     ++R GR+N ++LD++ V+YYG+   +  +A I+ P++  LLI PYDK+ L  IEKAI+ SDLG+TPNNDG V+RL++PQLT ERRKEL K V K+
Sbjct:   10 KEKMEKAEQALTRQLGTIRAGRANASLLDRLTVDYYGAATPVNQMASISVPEARMLLITPYDKTILGEIEKAILKSDLGLTPNNDGSVLRLSIPQLTEERRKELVKEVKKE 120          
The following BLAST results are available for this feature:
BLAST of CK939527 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_CLOTE1.717e-2651.85Ribosome-recycling factor OS=Clostridium tetani GN... [more]
RRF_CLOBL1.717e-2652.78Ribosome-recycling factor OS=Clostridium botulinum... [more]
RRF_LISMO2.242e-2649.55Ribosome-recycling factor OS=Listeria monocytogene... [more]
RRF_LISMH2.242e-2649.55Ribosome-recycling factor OS=Listeria monocytogene... [more]
RRF_LISMF2.242e-2649.55Ribosome-recycling factor OS=Listeria monocytogene... [more]
RRF_LISMC2.242e-2649.55Ribosome-recycling factor OS=Listeria monocytogene... [more]
RRF_BIFAA2.242e-2648.60Ribosome-recycling factor OS=Bifidobacterium adole... [more]
RRF_BDEBA2.242e-2650.89Ribosome-recycling factor OS=Bdellovibrio bacterio... [more]
RRF_MYCA92.929e-2645.37Ribosome-recycling factor OS=Mycobacterium abscess... [more]
RRF_LISIN2.929e-2649.55Ribosome-recycling factor OS=Listeria innocua GN=f... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004749_D04 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IF_D04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939527 ID=CK939527; Name=CK939527; organism=Citrus sinensis; type=EST; length=671bp
GCGGGGAACTANNNTCTTAAGTCTGAGCGAGCGTTCATGGCCACGCACTT
TTCTTCAACAGGGCCCATGCGGTCCATTTTCCAACTGAAATCAAATCCTC
CCAAATGCCTCCTTTTCCTCCCTGATTCTTGTCATAGAAGAGCCGAAACT
GCCACGTGCCGTGCTAGCAGCGTTAGTGTGCGCCAGTGGAGCTCAGCTGC
AAACTACTCTAGACTTGTGAAATTATCCAACAAACCTATCGTTGTAAGAC
AACTGGCACACAAGAGAAATGGAGTTGTGAGGTGTGCAACTATTGAAGAA
ATTGAAGCGGAAAAATCTTCCATTGAGAAGGATGTTAAAGCTAGGATGGA
AAGGACTATCGATATGGTCCGAACCAATTTCAATTCCGTGAGGACAGGAA
GATCGAATCCAGCTATGCTAGATAAGATTGAGGTGGAATACTATGGAAGC
CCAGTAAGTTTGAAGAGCATAGCTCAAATCAATACCCCTGATTCAAGTTC
TCTATTGATTCAACCATATGACAAATCCAGCTTAAAGTCTATAGAGAAGG
CCATAGTAAGCTCTGATCTTGGCATGACCCCAAACAATGATGGTGAAGTC
ATACGGTTAACCCTTCCTCAATTGACATCCGAAAGGAGGAAGGAACTGTC
AAAGGTTGTGGCCAAACAGGC
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