CK939527

Overview
NameCK939527
Unique NameCK939527
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length671
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_LEPBP (Ribosome-recycling factor OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=frr PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.825e-26
Identity = 50/112 (44.64%), Postives = 84/112 (75.00%), Query Frame = 1
Query:  334 VKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669
            ++++M++T+D ++ +F ++RTG++NP M++ + V+YYG+   L  + +I  P+   +LI P++K  LK IEKAI ++ LG+TPNNDG  IR+ +P+LT ERRKEL+KVV ++
Sbjct:    9 MQSKMDKTVDALKKDFGTIRTGKANPMMVEDVRVDYYGTLTPLNQLGKIACPEPRVILITPFEKGMLKDIEKAIFAASLGLTPNNDGSSIRINIPELTGERRKELAKVVKQK 120          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_LEPBA (Ribosome-recycling factor OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=frr PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.825e-26
Identity = 50/112 (44.64%), Postives = 84/112 (75.00%), Query Frame = 1
Query:  334 VKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669
            ++++M++T+D ++ +F ++RTG++NP M++ + V+YYG+   L  + +I  P+   +LI P++K  LK IEKAI ++ LG+TPNNDG  IR+ +P+LT ERRKEL+KVV ++
Sbjct:    9 MQSKMDKTVDALKKDFGTIRTGKANPMMVEDVRVDYYGTLTPLNQLGKIACPEPRVILITPFEKGMLKDIEKAIFAASLGLTPNNDGSSIRINIPELTGERRKELAKVVKQK 120          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_CLOBM (Ribosome-recycling factor OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=frr PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.825e-26
Identity = 56/108 (51.85%), Postives = 79/108 (73.15%), Query Frame = 1
Query:  343 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666
            +M ++I  ++    S++ GR+NPAMLD+I+ EYYGS   L  +A I+ P++  LLIQP+DKSS+ +IEKAI+ SDLG+ P+NDG VIRL +P+LT E RK + K V K
Sbjct:   12 KMGKSIVALKRELASMKAGRANPAMLDRIDAEYYGSMTPLNQLANISVPEARVLLIQPWDKSSMGAIEKAILKSDLGLNPSNDGTVIRLVIPELTEETRKNIVKTVKK 119          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_CLOBH (Ribosome-recycling factor OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=frr PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.825e-26
Identity = 56/108 (51.85%), Postives = 77/108 (71.30%), Query Frame = 1
Query:  343 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666
            +M +TI  ++    S++ GR+NPAMLD+IE EYYGS   L  +  I+ P++  LLIQP+DK +L +IEKAI+ SDLG+ P+NDG VIRL +P+LT E RK + K V K
Sbjct:   12 KMGKTIVALKKELASMKAGRANPAMLDRIEAEYYGSMTPLNQLGNISVPEARVLLIQPWDKGALSAIEKAILKSDLGLNPSNDGTVIRLVIPELTEETRKNIVKTVKK 119          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_CLOB1 (Ribosome-recycling factor OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=frr PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.825e-26
Identity = 56/108 (51.85%), Postives = 77/108 (71.30%), Query Frame = 1
Query:  343 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666
            +M +TI  ++    S++ GR+NPAMLD+IE EYYGS   L  +  I+ P++  LLIQP+DK +L +IEKAI+ SDLG+ P+NDG VIRL +P+LT E RK + K V K
Sbjct:   12 KMGKTIVALKKELASMKAGRANPAMLDRIEAEYYGSMTPLNQLGNISVPEARVLLIQPWDKGALSAIEKAILKSDLGLNPSNDGTVIRLVIPELTEETRKNIVKTVKK 119          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_CARHZ (Ribosome-recycling factor OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=frr PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.825e-26
Identity = 54/113 (47.79%), Postives = 83/113 (73.45%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669
            + +  M++ I++++  F ++R GR+ PA+L+K+ VEYYG+ + +  +A I+ P+   L+IQP+DK +L +IEKAI+ SDLG+TP NDG VIRL +P LT ERR+EL KV  K+
Sbjct:    8 EAQDHMQKAIEVLKKEFATMRVGRATPALLEKVVVEYYGTQMPVNQLATISAPEPRLLVIQPWDKGALGAIEKAILKSDLGITPTNDGSVIRLAIPPLTQERRQELVKVARKK 120          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_BIFLO (Ribosome-recycling factor OS=Bifidobacterium longum GN=frr PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.825e-26
Identity = 51/107 (47.66%), Postives = 80/107 (74.77%), Query Frame = 1
Query:  337 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKV 657
            K +M +T++  + NF+ +RTGR+NPA+L+ I V+YYG+P  +K++A I  P+  +L + P+D S   ++EKA+ +SDLG++PN DG VIRLT+P+LT +RRKE  K+
Sbjct:    8 KEQMAKTVENTKENFSGIRTGRANPALLNGITVDYYGAPTPIKAVASIGVPEPRTLSVTPFDASQAGAVEKALRNSDLGISPNRDGNVIRLTMPELTEDRRKEYVKL 114          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_BIFLI (Ribosome-recycling factor OS=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / NCTC 11817 / S12) GN=frr PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.825e-26
Identity = 51/107 (47.66%), Postives = 80/107 (74.77%), Query Frame = 1
Query:  337 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKV 657
            + +M +T++  + NF+ +RTGR+NPA+L+ I V+YYG+P  +K++A I  P+  +L + P+D S   ++EKA+ +SDLG++PN DG VIRLT+P+LT ERRKE  K+
Sbjct:    8 REQMAKTVENTKENFSGIRTGRANPALLNGITVDYYGAPTPIKAVASIGVPEPRTLSVTPFDASQAGAVEKALRNSDLGVSPNRDGNVIRLTMPELTEERRKEYVKL 114          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_BIFLD (Ribosome-recycling factor OS=Bifidobacterium longum (strain DJO10A) GN=frr PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.825e-26
Identity = 51/107 (47.66%), Postives = 80/107 (74.77%), Query Frame = 1
Query:  337 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKV 657
            K +M +T++  + NF+ +RTGR+NPA+L+ I V+YYG+P  +K++A I  P+  +L + P+D S   ++EKA+ +SDLG++PN DG VIRLT+P+LT +RRKE  K+
Sbjct:    8 KEQMAKTVENTKENFSGIRTGRANPALLNGITVDYYGAPTPIKAVASIGVPEPRTLSVTPFDASQAGAVEKALRNSDLGISPNRDGNVIRLTMPELTEDRRKEYVKL 114          
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_LAWIP (Ribosome-recycling factor OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=frr PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.995e-26
Identity = 54/112 (48.21%), Postives = 81/112 (72.32%), Query Frame = 1
Query:  331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666
            D + RM + I  +   F  +RTGR++ +++D I+V+YYG+P  +  +A I  PDSSS+ IQP+DK++   IEKAI+ S+LG+TP NDG++IR+TLP LT +RRK+L K+  K
Sbjct:   11 DSQERMVKAITSLEKEFTKLRTGRASTSIVDTIKVDYYGTPTPINQLASIAIPDSSSITIQPWDKTAFNPIEKAILKSELGLTPINDGKIIRITLPPLTEDRRKDLVKLARK 122          
The following BLAST results are available for this feature:
BLAST of CK939527 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_LEPBP3.825e-2644.64Ribosome-recycling factor OS=Leptospira biflexa se... [more]
RRF_LEPBA3.825e-2644.64Ribosome-recycling factor OS=Leptospira biflexa se... [more]
RRF_CLOBM3.825e-2651.85Ribosome-recycling factor OS=Clostridium botulinum... [more]
RRF_CLOBH3.825e-2651.85Ribosome-recycling factor OS=Clostridium botulinum... [more]
RRF_CLOB13.825e-2651.85Ribosome-recycling factor OS=Clostridium botulinum... [more]
RRF_CARHZ3.825e-2647.79Ribosome-recycling factor OS=Carboxydothermus hydr... [more]
RRF_BIFLO3.825e-2647.66Ribosome-recycling factor OS=Bifidobacterium longu... [more]
RRF_BIFLI3.825e-2647.66Ribosome-recycling factor OS=Bifidobacterium longu... [more]
RRF_BIFLD3.825e-2647.66Ribosome-recycling factor OS=Bifidobacterium longu... [more]
RRF_LAWIP4.995e-2648.21Ribosome-recycling factor OS=Lawsonia intracellula... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004749_D04 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IF_D04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939527 ID=CK939527; Name=CK939527; organism=Citrus sinensis; type=EST; length=671bp
GCGGGGAACTANNNTCTTAAGTCTGAGCGAGCGTTCATGGCCACGCACTT
TTCTTCAACAGGGCCCATGCGGTCCATTTTCCAACTGAAATCAAATCCTC
CCAAATGCCTCCTTTTCCTCCCTGATTCTTGTCATAGAAGAGCCGAAACT
GCCACGTGCCGTGCTAGCAGCGTTAGTGTGCGCCAGTGGAGCTCAGCTGC
AAACTACTCTAGACTTGTGAAATTATCCAACAAACCTATCGTTGTAAGAC
AACTGGCACACAAGAGAAATGGAGTTGTGAGGTGTGCAACTATTGAAGAA
ATTGAAGCGGAAAAATCTTCCATTGAGAAGGATGTTAAAGCTAGGATGGA
AAGGACTATCGATATGGTCCGAACCAATTTCAATTCCGTGAGGACAGGAA
GATCGAATCCAGCTATGCTAGATAAGATTGAGGTGGAATACTATGGAAGC
CCAGTAAGTTTGAAGAGCATAGCTCAAATCAATACCCCTGATTCAAGTTC
TCTATTGATTCAACCATATGACAAATCCAGCTTAAAGTCTATAGAGAAGG
CCATAGTAAGCTCTGATCTTGGCATGACCCCAAACAATGATGGTGAAGTC
ATACGGTTAACCCTTCCTCAATTGACATCCGAAAGGAGGAAGGAACTGTC
AAAGGTTGTGGCCAAACAGGC
back to top