CK939527
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_LEPBP (Ribosome-recycling factor OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=frr PE=3 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 3.825e-26 Identity = 50/112 (44.64%), Postives = 84/112 (75.00%), Query Frame = 1 Query: 334 VKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669 ++++M++T+D ++ +F ++RTG++NP M++ + V+YYG+ L + +I P+ +LI P++K LK IEKAI ++ LG+TPNNDG IR+ +P+LT ERRKEL+KVV ++ Sbjct: 9 MQSKMDKTVDALKKDFGTIRTGKANPMMVEDVRVDYYGTLTPLNQLGKIACPEPRVILITPFEKGMLKDIEKAIFAASLGLTPNNDGSSIRINIPELTGERRKELAKVVKQK 120
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_LEPBA (Ribosome-recycling factor OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=frr PE=3 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 3.825e-26 Identity = 50/112 (44.64%), Postives = 84/112 (75.00%), Query Frame = 1 Query: 334 VKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669 ++++M++T+D ++ +F ++RTG++NP M++ + V+YYG+ L + +I P+ +LI P++K LK IEKAI ++ LG+TPNNDG IR+ +P+LT ERRKEL+KVV ++ Sbjct: 9 MQSKMDKTVDALKKDFGTIRTGKANPMMVEDVRVDYYGTLTPLNQLGKIACPEPRVILITPFEKGMLKDIEKAIFAASLGLTPNNDGSSIRINIPELTGERRKELAKVVKQK 120
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_CLOBM (Ribosome-recycling factor OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=frr PE=3 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 3.825e-26 Identity = 56/108 (51.85%), Postives = 79/108 (73.15%), Query Frame = 1 Query: 343 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666 +M ++I ++ S++ GR+NPAMLD+I+ EYYGS L +A I+ P++ LLIQP+DKSS+ +IEKAI+ SDLG+ P+NDG VIRL +P+LT E RK + K V K Sbjct: 12 KMGKSIVALKRELASMKAGRANPAMLDRIDAEYYGSMTPLNQLANISVPEARVLLIQPWDKSSMGAIEKAILKSDLGLNPSNDGTVIRLVIPELTEETRKNIVKTVKK 119
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_CLOBH (Ribosome-recycling factor OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=frr PE=3 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 3.825e-26 Identity = 56/108 (51.85%), Postives = 77/108 (71.30%), Query Frame = 1 Query: 343 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666 +M +TI ++ S++ GR+NPAMLD+IE EYYGS L + I+ P++ LLIQP+DK +L +IEKAI+ SDLG+ P+NDG VIRL +P+LT E RK + K V K Sbjct: 12 KMGKTIVALKKELASMKAGRANPAMLDRIEAEYYGSMTPLNQLGNISVPEARVLLIQPWDKGALSAIEKAILKSDLGLNPSNDGTVIRLVIPELTEETRKNIVKTVKK 119
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_CLOB1 (Ribosome-recycling factor OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=frr PE=3 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 3.825e-26 Identity = 56/108 (51.85%), Postives = 77/108 (71.30%), Query Frame = 1 Query: 343 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666 +M +TI ++ S++ GR+NPAMLD+IE EYYGS L + I+ P++ LLIQP+DK +L +IEKAI+ SDLG+ P+NDG VIRL +P+LT E RK + K V K Sbjct: 12 KMGKTIVALKKELASMKAGRANPAMLDRIEAEYYGSMTPLNQLGNISVPEARVLLIQPWDKGALSAIEKAILKSDLGLNPSNDGTVIRLVIPELTEETRKNIVKTVKK 119
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_CARHZ (Ribosome-recycling factor OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=frr PE=3 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 3.825e-26 Identity = 54/113 (47.79%), Postives = 83/113 (73.45%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQ 669 + + M++ I++++ F ++R GR+ PA+L+K+ VEYYG+ + + +A I+ P+ L+IQP+DK +L +IEKAI+ SDLG+TP NDG VIRL +P LT ERR+EL KV K+ Sbjct: 8 EAQDHMQKAIEVLKKEFATMRVGRATPALLEKVVVEYYGTQMPVNQLATISAPEPRLLVIQPWDKGALGAIEKAILKSDLGITPTNDGSVIRLAIPPLTQERRQELVKVARKK 120
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_BIFLO (Ribosome-recycling factor OS=Bifidobacterium longum GN=frr PE=3 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 3.825e-26 Identity = 51/107 (47.66%), Postives = 80/107 (74.77%), Query Frame = 1 Query: 337 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKV 657 K +M +T++ + NF+ +RTGR+NPA+L+ I V+YYG+P +K++A I P+ +L + P+D S ++EKA+ +SDLG++PN DG VIRLT+P+LT +RRKE K+ Sbjct: 8 KEQMAKTVENTKENFSGIRTGRANPALLNGITVDYYGAPTPIKAVASIGVPEPRTLSVTPFDASQAGAVEKALRNSDLGISPNRDGNVIRLTMPELTEDRRKEYVKL 114
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_BIFLI (Ribosome-recycling factor OS=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / NCTC 11817 / S12) GN=frr PE=3 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 3.825e-26 Identity = 51/107 (47.66%), Postives = 80/107 (74.77%), Query Frame = 1 Query: 337 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKV 657 + +M +T++ + NF+ +RTGR+NPA+L+ I V+YYG+P +K++A I P+ +L + P+D S ++EKA+ +SDLG++PN DG VIRLT+P+LT ERRKE K+ Sbjct: 8 REQMAKTVENTKENFSGIRTGRANPALLNGITVDYYGAPTPIKAVASIGVPEPRTLSVTPFDASQAGAVEKALRNSDLGVSPNRDGNVIRLTMPELTEERRKEYVKL 114
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_BIFLD (Ribosome-recycling factor OS=Bifidobacterium longum (strain DJO10A) GN=frr PE=3 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 3.825e-26 Identity = 51/107 (47.66%), Postives = 80/107 (74.77%), Query Frame = 1 Query: 337 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKV 657 K +M +T++ + NF+ +RTGR+NPA+L+ I V+YYG+P +K++A I P+ +L + P+D S ++EKA+ +SDLG++PN DG VIRLT+P+LT +RRKE K+ Sbjct: 8 KEQMAKTVENTKENFSGIRTGRANPALLNGITVDYYGAPTPIKAVASIGVPEPRTLSVTPFDASQAGAVEKALRNSDLGISPNRDGNVIRLTMPELTEDRRKEYVKL 114
BLAST of CK939527 vs. ExPASy Swiss-Prot
Match: RRF_LAWIP (Ribosome-recycling factor OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=frr PE=3 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 4.995e-26 Identity = 54/112 (48.21%), Postives = 81/112 (72.32%), Query Frame = 1 Query: 331 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAK 666 D + RM + I + F +RTGR++ +++D I+V+YYG+P + +A I PDSSS+ IQP+DK++ IEKAI+ S+LG+TP NDG++IR+TLP LT +RRK+L K+ K Sbjct: 11 DSQERMVKAITSLEKEFTKLRTGRASTSIVDTIKVDYYGTPTPINQLASIAIPDSSSITIQPWDKTAFNPIEKAILKSELGLTPINDGKIIRITLPPLTEDRRKDLVKLARK 122 The following BLAST results are available for this feature:
BLAST of CK939527 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CK939527 ID=CK939527; Name=CK939527; organism=Citrus sinensis; type=EST; length=671bpback to top |