CK939525

Overview
NameCK939525
Unique NameCK939525
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK939525_ssr17 microsatellite CK939525_ssr17:17..32. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2009 contig Csv1_Contig2009:1..869. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK939525 vs. ExPASy Swiss-Prot
Match: HSP15_SOYBN (17.6 kDa class I heat shock protein OS=Glycine max GN=HSP17.6-L PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.262e-17
Identity = 47/110 (42.73%), Postives = 64/110 (58.18%), Query Frame = 3
Query:  177 KSFNAPTRTYVRDAKAMAGTPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 506
            K F+ PT +   +  A   T  D KE   ++V   D+PGLK  ++KVQ+EDD VL IS             + R++R  GKFMR+F LPENA VE + A  ++GVLTVT+
Sbjct:   28 KDFHVPTSSVSAENSAFVNTRVDWKETQEAHVLKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVDRSSGKFMRRFRLPENAKVEQVKACMENGVLTVTI 137          
BLAST of CK939525 vs. ExPASy Swiss-Prot
Match: HSP13_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-M PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.262e-17
Identity = 50/110 (45.45%), Postives = 65/110 (59.09%), Query Frame = 3
Query:  177 KSFNAPTRTYVRDAKAMAGTPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 506
            K F+ PT     ++ A   T  D KE P ++VF  D+PGLK  ++KVQ+EDD VL IS             + R+ER  G FMR+F LPENA VE + A  ++GVLTVTV
Sbjct:   28 KDFHFPTSLSAENS-AFVNTRVDWKETPEAHVFEADIPGLKKEEVKVQIEDDRVLQISGERNLEKEDKNDTWHRVERSSGNFMRRFRLPENAKVEQVKASMENGVLTVTV 136          
BLAST of CK939525 vs. ExPASy Swiss-Prot
Match: HS181_ARATH (18.1 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.262e-17
Identity = 47/99 (47.47%), Postives = 60/99 (60.61%), Query Frame = 3
Query:  210 RDAKAMAGTPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 506
            RD  A      D KE P ++VF  D+PGLK  ++KV+VED NVL IS            K+ R+ER  GKFMR+F LPENA +E + A  ++GVLTV V
Sbjct:   44 RDVAAFTNARVDWKETPEAHVFKADLPGLKKEEVKVEVEDKNVLQISGERSKENEEKNDKWHRVERASGKFMRRFRLPENAKMEEVKATMENGVLTVVV 142          
BLAST of CK939525 vs. ExPASy Swiss-Prot
Match: HSP11_SOLPE (17.7 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.583e-17
Identity = 46/98 (46.94%), Postives = 62/98 (63.27%), Query Frame = 3
Query:  213 DAKAMAGTPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 506
            +  A A T  D KE P ++VF  D+PGLK  ++KV+VE+D VL IS            K+ R+ER  GKFMR+F LPENA ++ + A  ++GVLTVTV
Sbjct:   40 ETSAFANTRIDWKETPEAHVFKADLPGLKLEEVKVEVEEDRVLQISGERNMEKEDKNDKWQRVERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTV 137          
BLAST of CK939525 vs. ExPASy Swiss-Prot
Match: HSP11_MEDSA (18.1 kDa class I heat shock protein (Fragment) OS=Medicago sativa GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.597e-17
Identity = 44/102 (43.14%), Postives = 64/102 (62.75%), Query Frame = 3
Query:  201 TYVRDAKAMAGTPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 506
            ++ ++  A   T  D KE P ++VF  D+PGLK  ++KV++EDD VL IS            ++ R+ER  GKFMR+F LPENA ++ + A  ++GVLTVTV
Sbjct:   25 SFPQENSAFVSTRIDWKETPEAHVFKADLPGLKKEEVKVEIEDDRVLQISGERNVEKEDKNDQWHRVERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVTV 126          
BLAST of CK939525 vs. ExPASy Swiss-Prot
Match: HS181_ORYSJ (18.1 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.597e-17
Identity = 50/118 (42.37%), Postives = 66/118 (55.93%), Query Frame = 3
Query:  153 GADDSADNKSFNAPTRTYVRDAKAMAGTPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 506
            G+   +    F +  R    +  A AG   D KE P ++VF  D+PGLK  ++KV+VED NVL IS            K+ R+ER  GKF+R+F LPEN   E I A  ++GVLTVTV
Sbjct:   27 GSGSRSSGSIFPSFPRGTSSETAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERSKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTV 144          
BLAST of CK939525 vs. ExPASy Swiss-Prot
Match: HS16B_ORYSJ (16.9 kDa class I heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP16.9B PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.597e-17
Identity = 46/98 (46.94%), Postives = 62/98 (63.27%), Query Frame = 3
Query:  213 DAKAMAGTPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 506
            D  A A    D KE P S+VF  D+PG+K  ++KV+VE+ NVL+IS            K+ R+ER  G+FMR+F LPENA V+ + A  ++GVLTVTV
Sbjct:   36 DTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGMENGVLTVTV 133          
BLAST of CK939525 vs. ExPASy Swiss-Prot
Match: HS16A_ORYSJ (16.9 kDa class I heat shock protein 1 OS=Oryza sativa subsp. japonica GN=HSP16.9A PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.597e-17
Identity = 46/98 (46.94%), Postives = 62/98 (63.27%), Query Frame = 3
Query:  213 DAKAMAGTPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 506
            D  A A    D KE P S+VF  D+PG+K  ++KV+VE+ NVL+IS            K+ R+ER  G+FMR+F LPENA V+ + A  ++GVLTVTV
Sbjct:   36 DTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGLENGVLTVTV 133          
BLAST of CK939525 vs. ExPASy Swiss-Prot
Match: HS177_ORYSJ (17.7 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.123e-16
Identity = 47/98 (47.96%), Postives = 60/98 (61.22%), Query Frame = 3
Query:  213 DAKAMAGTPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 506
            DA A AG   D KE P  +VF  D+PGLK  ++KV+V+D N+L IS            K+ R+ER  GKF+R+F LPEN   E I A  ++GVLTVTV
Sbjct:   45 DAAAFAGARIDWKETPEVHVFKADVPGLKKEEVKVEVDDGNILQISGERSREQEEKSDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTV 142          
BLAST of CK939525 vs. ExPASy Swiss-Prot
Match: HS16A_WHEAT (16.9 kDa class I heat shock protein 1 OS=Triticum aestivum GN=hsp16.9A PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.123e-16
Identity = 45/98 (45.92%), Postives = 63/98 (64.29%), Query Frame = 3
Query:  213 DAKAMAGTPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 506
            +  A A    D KE P ++VF VD+PG+K  ++KV+VED NVL++S            K+ R+ER  GKF+R+F LPE+A VE + A  ++GVLTVTV
Sbjct:   37 ETAAFANARVDWKETPEAHVFKVDLPGVKKEEVKVEVEDGNVLVVSGERSREKEDKNDKWHRVERSSGKFVRRFRLPEDAKVEEVKAGLENGVLTVTV 134          
The following BLAST results are available for this feature:
BLAST of CK939525 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
HSP15_SOYBN2.262e-1742.7317.6 kDa class I heat shock protein OS=Glycine max... [more]
HSP13_SOYBN2.262e-1745.4517.5 kDa class I heat shock protein OS=Glycine max... [more]
HS181_ARATH2.262e-1747.4718.1 kDa class I heat shock protein OS=Arabidopsis... [more]
HSP11_SOLPE6.583e-1746.9417.7 kDa class I heat shock protein OS=Solanum per... [more]
HSP11_MEDSA8.597e-1743.1418.1 kDa class I heat shock protein (Fragment) OS=... [more]
HS181_ORYSJ8.597e-1742.3718.1 kDa class I heat shock protein OS=Oryza sativ... [more]
HS16B_ORYSJ8.597e-1746.9416.9 kDa class I heat shock protein 2 OS=Oryza sat... [more]
HS16A_ORYSJ8.597e-1746.9416.9 kDa class I heat shock protein 1 OS=Oryza sat... [more]
HS177_ORYSJ1.123e-1647.9617.7 kDa class I heat shock protein OS=Oryza sativ... [more]
HS16A_WHEAT1.123e-1645.9216.9 kDa class I heat shock protein 1 OS=Triticum ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004749_D12 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IF_D12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939525 ID=CK939525; Name=CK939525; organism=Citrus sinensis; type=EST; length=869bp
GGGGAACCAACAAAATACGAACGAACGAACGAATCCCCATTTAGCAGTAG
CGAACATCAACAACAGCTAATACTCGCAAAAGAATGGATTTCAGAATCAT
GGGTTTGGACTCATCGCCACTCTTTTCAACTCTGCAGCACATGATGGAGA
TGGGGGCGGACGACTCCGCTGACAACAAGTCATTCAACGCGCCGACGCGC
ACGTACGTGAGAGACGCCAAGGCAATGGCGGGGACGCCTGCGGACGTAAA
GGAGTATCCGAACTCGTACGTGTTCATCGTCGACATGCCCGGACTGAAGT
CGGGGGACATCAAGGTCCAAGTGGAGGACGACAATGTGCTGCTCATAAGC
GGAGAGAGGAAGCGGGAGGAGGAGAAAGAGGGGGCCAAGTATGTGAGAAT
GGAGAGGAGGGTCGGCAAGTTTATGAGGAAATTTGTGCTGCCTGAGAATG
CTAACGTTGAAGCCATTTCGGCTGTGTGTCAGGACGGAGTGTTGACTGTG
ACCGTCGATAAGCTGCCACCGCCGGAGCCCAAGAAGCCCAAGACCATTGA
GGTTAAGATTGCTTGAACTTTAAAGAGAGAGAATATGCTGGATTGTGGGT
GCTGATGTCTTTTCTATTTGCCGGTTGTTGTTATGAATAATTTTGCTTGT
GGGTGTGACGGTACTATGCCTCTGTAACCTCCTCTTCCTTTTTCTTTTTT
TGTTTTTCTTCCCTTTTTTTCGAAAATTCTCTCTGTTCACTGGTTTGCGG
TTCGGTCTTTAGCATTCCGGAGGGGAAGCTGACGGTTGTCTACTGGTAGA
CATCTAGTTGTTATAATTAATGGAAAANCCAGCTTTTATCTGNNNAAAAA
AAAANANAAAAAAAAAAAA
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