CK939525

Overview
NameCK939525
Unique NameCK939525
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK939525_ssr17 microsatellite CK939525_ssr17:17..32. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2009 contig Csv1_Contig2009:1..869. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK939525 vs. ExPASy Swiss-Prot
Match: HS17A_ORYSJ (17.9 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.9A PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.915e-16
Identity = 48/118 (40.68%), Postives = 68/118 (57.63%), Query Frame = 3
Query:  153 GADDSADNKSFNAPTRTYVRDAKAMAGTPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 506
            G+  S+    F +  R    +  A AG   D KE P ++VF  D+PGLK  ++KV+V+D N+L IS            ++ R+ER  GKF+R+F LP+NA  E I A  ++GVLTVTV
Sbjct:   27 GSGGSSSGSIFPSFPRGASSETAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPEQIKASMENGVLTVTV 144          
BLAST of CK939525 vs. ExPASy Swiss-Prot
Match: HSP17_ARATH (17.4 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.4A PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 2.501e-16
Identity = 45/104 (43.27%), Postives = 61/104 (58.65%), Query Frame = 3
Query:  195 TRTYVRDAKAMAGTPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 506
            T    +D  A      D +E P ++VF  D+PGLK  ++KV+VED N+L IS             + R+ER  GKFMR+F LPENA VE + A  ++GVL+VTV
Sbjct:   36 TNAPAKDVAAFTNAKVDWRETPEAHVFKADVPGLKKEEVKVEVEDGNILQISGERSSENEEKSDTWHRVERSSGKFMRRFRLPENAKVEEVKASMENGVLSVTV 139          
BLAST of CK939525 vs. ExPASy Swiss-Prot
Match: HSP12_SOLPE (17.6 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.501e-16
Identity = 45/98 (45.92%), Postives = 61/98 (62.24%), Query Frame = 3
Query:  213 DAKAMAGTPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 506
            +  A A T  D KE P ++VF  D+PGLK  ++KV+VE+D VL IS             + R+ER  GKFMR+F LPENA ++ + A  ++GVLTVTV
Sbjct:   40 ETSAFANTRIDWKETPEAHVFKADLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTV 137          
BLAST of CK939525 vs. ExPASy Swiss-Prot
Match: HSP12_DAUCA (18.0 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.572e-16
Identity = 45/99 (45.45%), Postives = 62/99 (62.63%), Query Frame = 3
Query:  210 RDAKAMAGTPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 506
            ++  A A T  D KE P ++VF  D+PGLK  ++KV+VE+  VL IS            K+ R+E   GKF+R+F LPENANV+ + A  ++GVLTVTV
Sbjct:   44 KETAAFANTHIDWKETPQAHVFKADLPGLKKEEVKVEVEEGKVLQISGERNKEKEEKNNKWHRVEFSSGKFLRRFRLPENANVDEVKAGMENGVLTVTV 142          
BLAST of CK939525 vs. ExPASy Swiss-Prot
Match: HSP11_CHERU (18.3 kDa class I heat shock protein OS=Chenopodium rubrum GN=HSP18 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.278e-16
Identity = 46/105 (43.81%), Postives = 61/105 (58.10%), Query Frame = 3
Query:  192 PTRTYVRDAKAMAGTPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 506
            P      +  A A    D KE P ++VF  D+PG+K  ++KV+VED NVL IS             + R+ER  G+FMRKF LPENA V+ + A  ++GVLTVTV
Sbjct:   41 PRSETAAETAAFANARIDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLRISGQRAREKEEKNDTWHRVERSSGQFMRKFRLPENAKVDQVKAGMENGVLTVTV 145          
BLAST of CK939525 vs. ExPASy Swiss-Prot
Match: HS17C_ARATH (17.6 kDa class I heat shock protein 3 OS=Arabidopsis thaliana GN=HSP17.6C PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.621e-15
Identity = 46/107 (42.99%), Postives = 62/107 (57.94%), Query Frame = 3
Query:  186 NAPTRTYVRDAKAMAGTPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 506
            NAP      D  A      D +E P ++VF  D+PGL+  ++KV+VED N+L IS            K+ R+ER  GKF R+F LPENA +E I A  ++GVL+VTV
Sbjct:   38 NAPAM----DVAAFTNAKVDWRETPEAHVFKADLPGLRKEEVKVEVEDGNILQISGERSNENEEKNDKWHRVERSSGKFTRRFRLPENAKMEEIKASMENGVLSVTV 140          
BLAST of CK939525 vs. ExPASy Swiss-Prot
Match: HSP11_DAUCA (17.8 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.717e-15
Identity = 42/99 (42.42%), Postives = 60/99 (60.61%), Query Frame = 3
Query:  210 RDAKAMAGTPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 506
            ++  A   T  D KE P ++VF  D+PGLK  ++KV++E+  VL IS            K+ R+ER  GKF+R+F LPENA V+ + A   +GV+TVTV
Sbjct:   42 KETAAFVNTHIDWKETPQAHVFKADLPGLKKEEVKVELEEGKVLQISGERNKEKEEKNDKWHRVERSSGKFLRRFRLPENAKVDEVKAAMANGVVTVTV 140          
BLAST of CK939525 vs. ExPASy Swiss-Prot
Match: HS16B_WHEAT (16.9 kDa class I heat shock protein 2 OS=Triticum aestivum GN=hsp16.9B PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.161e-15
Identity = 43/98 (43.88%), Postives = 61/98 (62.24%), Query Frame = 3
Query:  213 DAKAMAGTPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 506
            +  A A    D KE P ++VF  D+PG+K  ++KV+VED NVL++S            K+ R+ER  GKF+R+F L E+A VE + A  ++GVLTVTV
Sbjct:   37 ETAAFANARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTV 134          
BLAST of CK939525 vs. ExPASy Swiss-Prot
Match: HS186_ORYSJ (18.6 kDa class III heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.6 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.793e-14
Identity = 43/101 (42.57%), Postives = 59/101 (58.42%), Query Frame = 3
Query:  231 GTPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLI-------SXXXXXXXXXXXAKYVRMERRVG--KFMRKFVLPENANVEAISAVCQDGVLTVTV 506
            G P D+ E P  Y F++D+PGL   DI+V +E+D VL++       +            KY+R+ERR     F RKF LPE+A+   ISA C++GVLTVTV
Sbjct:   54 GAPVDIMETPGEYAFVLDVPGLSKSDIQVTLEEDRVLVMKSSNGAGNGKRKREEEEGECKYIRLERRASPRAFARKFRLPEDADTGGISARCENGVLTVTV 154          
BLAST of CK939525 vs. ExPASy Swiss-Prot
Match: HSP41_SOYBN (22.0 kDa class IV heat shock protein OS=Glycine max GN=HSP22.0 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.993e-14
Identity = 41/102 (40.20%), Postives = 66/102 (64.71%), Query Frame = 3
Query:  210 RDAKAMAGTPA--DVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVD 509
            +D  +MA +PA  D KE P  +V ++D+PGLK  +IKV+VE++ VL +S             + R+ER  GKF R+F LP+N +++++ A  ++GVLT+T+D
Sbjct:   57 KDEASMAMSPARVDWKETPEGHVIMLDVPGLKREEIKVEVEENRVLRVSGERKKEEEKKGDHWHRVERSYGKFWRQFRLPQNVDLDSVKAKLENGVLTLTLD 158          
The following BLAST results are available for this feature:
BLAST of CK939525 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
HS17A_ORYSJ1.915e-1640.6817.9 kDa class I heat shock protein OS=Oryza sativ... [more]
HSP17_ARATH2.501e-1643.2717.4 kDa class I heat shock protein OS=Arabidopsis... [more]
HSP12_SOLPE2.501e-1645.9217.6 kDa class I heat shock protein OS=Solanum per... [more]
HSP12_DAUCA5.572e-1645.4518.0 kDa class I heat shock protein OS=Daucus caro... [more]
HSP11_CHERU7.278e-1643.8118.3 kDa class I heat shock protein OS=Chenopodium... [more]
HS17C_ARATH1.621e-1542.9917.6 kDa class I heat shock protein 3 OS=Arabidops... [more]
HSP11_DAUCA4.717e-1542.4217.8 kDa class I heat shock protein OS=Daucus caro... [more]
HS16B_WHEAT6.161e-1543.8816.9 kDa class I heat shock protein 2 OS=Triticum ... [more]
HS186_ORYSJ1.793e-1442.5718.6 kDa class III heat shock protein OS=Oryza sat... [more]
HSP41_SOYBN3.993e-1440.2022.0 kDa class IV heat shock protein OS=Glycine ma... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004749_D12 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IF_D12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939525 ID=CK939525; Name=CK939525; organism=Citrus sinensis; type=EST; length=869bp
GGGGAACCAACAAAATACGAACGAACGAACGAATCCCCATTTAGCAGTAG
CGAACATCAACAACAGCTAATACTCGCAAAAGAATGGATTTCAGAATCAT
GGGTTTGGACTCATCGCCACTCTTTTCAACTCTGCAGCACATGATGGAGA
TGGGGGCGGACGACTCCGCTGACAACAAGTCATTCAACGCGCCGACGCGC
ACGTACGTGAGAGACGCCAAGGCAATGGCGGGGACGCCTGCGGACGTAAA
GGAGTATCCGAACTCGTACGTGTTCATCGTCGACATGCCCGGACTGAAGT
CGGGGGACATCAAGGTCCAAGTGGAGGACGACAATGTGCTGCTCATAAGC
GGAGAGAGGAAGCGGGAGGAGGAGAAAGAGGGGGCCAAGTATGTGAGAAT
GGAGAGGAGGGTCGGCAAGTTTATGAGGAAATTTGTGCTGCCTGAGAATG
CTAACGTTGAAGCCATTTCGGCTGTGTGTCAGGACGGAGTGTTGACTGTG
ACCGTCGATAAGCTGCCACCGCCGGAGCCCAAGAAGCCCAAGACCATTGA
GGTTAAGATTGCTTGAACTTTAAAGAGAGAGAATATGCTGGATTGTGGGT
GCTGATGTCTTTTCTATTTGCCGGTTGTTGTTATGAATAATTTTGCTTGT
GGGTGTGACGGTACTATGCCTCTGTAACCTCCTCTTCCTTTTTCTTTTTT
TGTTTTTCTTCCCTTTTTTTCGAAAATTCTCTCTGTTCACTGGTTTGCGG
TTCGGTCTTTAGCATTCCGGAGGGGAAGCTGACGGTTGTCTACTGGTAGA
CATCTAGTTGTTATAATTAATGGAAAANCCAGCTTTTATCTGNNNAAAAA
AAAANANAAAAAAAAAAAA
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