CK939525

Overview
NameCK939525
Unique NameCK939525
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK939525_ssr17 microsatellite CK939525_ssr17:17..32. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2009 contig Csv1_Contig2009:1..869. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK939525 vs. ExPASy Swiss-Prot
Match: HS17B_ARATH (17.6 kDa class I heat shock protein 2 OS=Arabidopsis thaliana GN=HSP17.6B PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.993e-14
Identity = 39/99 (39.39%), Postives = 60/99 (60.61%), Query Frame = 3
Query:  210 RDAKAMAGTPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 506
            R+  A+     D +E P ++VF  D+PGLK  ++KV++E+D+VL IS             + R+ER  G+F R+F LPEN  ++ + A  ++GVLTVTV
Sbjct:   38 RENSAIVNARVDWRETPEAHVFKADLPGLKKEEVKVEIEEDSVLKISGERHVEKEDKNDTWHRVERSSGQFTRRFRLPENVKMDQVKAAMENGVLTVTV 136          
BLAST of CK939525 vs. ExPASy Swiss-Prot
Match: HSP11_HELAN (17.6 kDa class I heat shock protein OS=Helianthus annuus GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.812e-14
Identity = 40/99 (40.40%), Postives = 59/99 (59.60%), Query Frame = 3
Query:  210 RDAKAMAGTPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 506
            R+  A+     D KE P ++V   D+PG+K  ++KV+VED  VL IS             + R+ER  GKF+R+F LPENA ++ + A+ ++GVLTV V
Sbjct:   37 RETAAIVNARIDWKETPEAHVLKADLPGMKKEEVKVEVEDGRVLQISGERCREQEEKDDTWHRVERSSGKFIRRFRLPENAKMDEVKAMMENGVLTVVV 135          
BLAST of CK939525 vs. ExPASy Swiss-Prot
Match: HSP11_SOYBN (17.3 kDa class I heat shock protein OS=Glycine max GN=HSP17.3-B PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.897e-14
Identity = 43/110 (39.09%), Postives = 63/110 (57.27%), Query Frame = 3
Query:  177 KSFNAPTRTYVRDAKAMAGTPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 506
            K F  P+     ++ A   T  D KE P ++VF  D+PGLK  ++K++++D  VL IS             + R+ER  GK +R+F LPENA V+ + A  ++GVLTVTV
Sbjct:   28 KDFPFPSSLSAENS-AFVSTRVDWKETPEAHVFKADIPGLKKEEVKLEIQDGRVLQISGERNVEKEDKNDTWHRVERSSGKLVRRFRLPENAKVDQVKASMENGVLTVTV 136          
BLAST of CK939525 vs. ExPASy Swiss-Prot
Match: HS178_ARATH (17.8 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.8 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.162e-13
Identity = 39/98 (39.80%), Postives = 58/98 (59.18%), Query Frame = 3
Query:  213 DAKAMAGTPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 506
            +  A+     D KE   ++VF  D+PG+K  ++KV++EDD+VL IS             + R+ER  G+F RKF LPEN  ++ + A  ++GVLTVTV
Sbjct:   41 ETSAITNARVDWKETAEAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGQFSRKFKLPENVKMDQVKASMENGVLTVTV 138          
BLAST of CK939525 vs. ExPASy Swiss-Prot
Match: HS17A_ARATH (17.6 kDa class I heat shock protein 1 OS=Arabidopsis thaliana GN=HSP17.6A PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.518e-13
Identity = 40/97 (41.24%), Postives = 58/97 (59.79%), Query Frame = 3
Query:  216 AKAMAGTPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 506
            + A+A    D KE   ++VF  D+PG+K  ++KV++EDD+VL IS             + R+ER  G F RKF LPEN  ++ + A  ++GVLTVTV
Sbjct:   40 SSAIANARVDWKETAEAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGGFSRKFRLPENVKMDQVKASMENGVLTVTV 136          
BLAST of CK939525 vs. ExPASy Swiss-Prot
Match: HSP41_PEA (22.7 kDa class IV heat shock protein OS=Pisum sativum GN=HSP22.7 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.415e-13
Identity = 36/88 (40.91%), Postives = 57/88 (64.77%), Query Frame = 3
Query:  243 DVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 506
            D KE P  +V +VD+PGLK  DIK++VE++ VL +S             + R+ER  GKF R+F LP+N +++++ A  ++GVLT+T+
Sbjct:   78 DWKETPEGHVIMVDVPGLKKDDIKIEVEENRVLRVSGERKKEEDKKGDHWHRVERSYGKFWRQFKLPQNVDLDSVKAKMENGVLTLTL 165          
BLAST of CK939525 vs. ExPASy Swiss-Prot
Match: HS166_ORYSJ (16.6 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP16.6 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.738e-12
Identity = 45/122 (36.89%), Postives = 61/122 (50.00%), Query Frame = 3
Query:  150 MGADDSADNKSFNAPTRTYVRDAKAMAGTPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXA---KYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 506
            M  D  AD   F A  R+       +     D KE P ++VF  D+PG++    KV+VED  VL+IS               ++  +ER  GKF R+F LP  A V+ +SA   +GVLTVTV
Sbjct:   13 MSVDFWADADPFGA-VRSLAERCPVLTNVRVDWKETPTAHVFTADLPGVRKDQAKVEVEDGGVLVISGERAREEDVDGKNDERWHHVERSSGKFQRRFRLPRGARVDQVSASMDNGVLTVTV 133          
BLAST of CK939525 vs. ExPASy Swiss-Prot
Match: HS174_ARATH (17.4 kDa class III heat shock protein OS=Arabidopsis thaliana GN=HSP17.4B PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.855e-11
Identity = 35/95 (36.84%), Postives = 59/95 (62.11%), Query Frame = 3
Query:  237 PADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLI----SXXXXXXXXXXXAKYVRMERRVGK-FMRKFVLPENANVEAISAVCQDGVLTVTV 506
            P D+ E P  Y+F +D+PG+   DI+V VE++  L+I                +KY+R+ERR+ +  ++KF LPE+A++ +++A  Q+GVLTV +
Sbjct:   43 PIDILESPKEYIFYLDIPGISKSDIQVTVEEERTLVIKSNGKRKRDDDESEEGSKYIRLERRLAQNLVKKFRLPEDADMASVTAKYQEGVLTVVI 137          
BLAST of CK939525 vs. ExPASy Swiss-Prot
Match: HS189_ORYSJ (18.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.9 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.164e-11
Identity = 37/101 (36.63%), Postives = 59/101 (58.42%), Query Frame = 3
Query:  216 AKAMAGTPA----DVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 506
            A A AG P+    D KE   ++VF+ DMPG++  +++V+VE++ VL IS            ++ R+ER   +F+R   LP NAN + + A   +GVLT+T+
Sbjct:   60 AAAAAGVPSTASMDWKETAAAHVFMADMPGVRREEVRVEVEEEKVLRISGQRARAAEEKGERWHRVERSSERFVRTVRLPPNANTDGVHAALDNGVLTITI 160          
BLAST of CK939525 vs. ExPASy Swiss-Prot
Match: HSP22_ARATH (22.0 kDa heat shock protein OS=Arabidopsis thaliana GN=HSP22.0 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.133e-11
Identity = 32/95 (33.68%), Postives = 58/95 (61.05%), Query Frame = 3
Query:  222 AMAGTPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 506
            A++    D KE    +  ++D+PGLK  ++K++VE++ VL +S            ++ R+ER  GKF R+F LP+N ++E++ A  ++GVLT+ +
Sbjct:   67 ALSPARVDWKETAEGHEIMLDIPGLKKDEVKIEVEENGVLRVSGERKREEEKKGDQWHRVERSYGKFWRQFKLPDNVDMESVKAKLENGVLTINL 161          
The following BLAST results are available for this feature:
BLAST of CK939525 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
HS17B_ARATH3.993e-1439.3917.6 kDa class I heat shock protein 2 OS=Arabidops... [more]
HSP11_HELAN6.812e-1440.4017.6 kDa class I heat shock protein OS=Helianthus ... [more]
HSP11_SOYBN8.897e-1439.0917.3 kDa class I heat shock protein OS=Glycine max... [more]
HS178_ARATH1.162e-1339.8017.8 kDa class I heat shock protein OS=Arabidopsis... [more]
HS17A_ARATH1.518e-1341.2417.6 kDa class I heat shock protein 1 OS=Arabidops... [more]
HSP41_PEA4.415e-1340.9122.7 kDa class IV heat shock protein OS=Pisum sati... [more]
HS166_ORYSJ3.738e-1236.8916.6 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS174_ARATH1.855e-1136.8417.4 kDa class III heat shock protein OS=Arabidops... [more]
HS189_ORYSJ3.164e-1136.6318.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP22_ARATH4.133e-1133.6822.0 kDa heat shock protein OS=Arabidopsis thalian... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004749_D12 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IF_D12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939525 ID=CK939525; Name=CK939525; organism=Citrus sinensis; type=EST; length=869bp
GGGGAACCAACAAAATACGAACGAACGAACGAATCCCCATTTAGCAGTAG
CGAACATCAACAACAGCTAATACTCGCAAAAGAATGGATTTCAGAATCAT
GGGTTTGGACTCATCGCCACTCTTTTCAACTCTGCAGCACATGATGGAGA
TGGGGGCGGACGACTCCGCTGACAACAAGTCATTCAACGCGCCGACGCGC
ACGTACGTGAGAGACGCCAAGGCAATGGCGGGGACGCCTGCGGACGTAAA
GGAGTATCCGAACTCGTACGTGTTCATCGTCGACATGCCCGGACTGAAGT
CGGGGGACATCAAGGTCCAAGTGGAGGACGACAATGTGCTGCTCATAAGC
GGAGAGAGGAAGCGGGAGGAGGAGAAAGAGGGGGCCAAGTATGTGAGAAT
GGAGAGGAGGGTCGGCAAGTTTATGAGGAAATTTGTGCTGCCTGAGAATG
CTAACGTTGAAGCCATTTCGGCTGTGTGTCAGGACGGAGTGTTGACTGTG
ACCGTCGATAAGCTGCCACCGCCGGAGCCCAAGAAGCCCAAGACCATTGA
GGTTAAGATTGCTTGAACTTTAAAGAGAGAGAATATGCTGGATTGTGGGT
GCTGATGTCTTTTCTATTTGCCGGTTGTTGTTATGAATAATTTTGCTTGT
GGGTGTGACGGTACTATGCCTCTGTAACCTCCTCTTCCTTTTTCTTTTTT
TGTTTTTCTTCCCTTTTTTTCGAAAATTCTCTCTGTTCACTGGTTTGCGG
TTCGGTCTTTAGCATTCCGGAGGGGAAGCTGACGGTTGTCTACTGGTAGA
CATCTAGTTGTTATAATTAATGGAAAANCCAGCTTTTATCTGNNNAAAAA
AAAANANAAAAAAAAAAAA
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