CN188238
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_BURMS (Regulator of ribonuclease activity A OS=Burkholderia mallei (strain SAVP1) GN=rraA PE=3 SV=1) HSP 1 Score: 190.274 bits (482), Expect = 1.035e-47 Identity = 86/158 (54.43%), Postives = 117/158 (74.05%), Query Frame = -1 Query: 149 LVTTAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILIS 622 + T ++CDA+ + +G LR L+P+F+ +G + F+GP TLK+FEDN L+R LE+ G GRVLVVDGGGSLRCA++GGN A+ NGWAGIVVNGC+RD DE+ C +GV ALA+HP K++K+G G P+ + GTRI G+W+YAD DG+L+S Sbjct: 2 MFATTDLCDAHEDRLAAGTLRVLEPVFRPFGGVRRFAGPAATLKLFEDNSLVRTALEQDGAGRVLVVDGGGSLRCALVGGNLGKLAEKNGWAGIVVNGCVRDSDELAECRVGVLALAAHPRKSDKRGAGVSDAPVDVRGTRIVPGDWIYADADGVLVS 159
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_BURMA (Regulator of ribonuclease activity A OS=Burkholderia mallei GN=rraA PE=3 SV=1) HSP 1 Score: 190.274 bits (482), Expect = 1.035e-47 Identity = 86/158 (54.43%), Postives = 117/158 (74.05%), Query Frame = -1 Query: 149 LVTTAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILIS 622 + T ++CDA+ + +G LR L+P+F+ +G + F+GP TLK+FEDN L+R LE+ G GRVLVVDGGGSLRCA++GGN A+ NGWAGIVVNGC+RD DE+ C +GV ALA+HP K++K+G G P+ + GTRI G+W+YAD DG+L+S Sbjct: 2 MFATTDLCDAHEDRLAAGTLRVLEPVFRPFGGVRRFAGPAATLKLFEDNSLVRTALEQDGAGRVLVVDGGGSLRCALVGGNLGKLAEKNGWAGIVVNGCVRDSDELAECRVGVLALAAHPRKSDKRGAGVSDAPVDVRGTRIVPGDWIYADADGVLVS 159
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_BURM9 (Regulator of ribonuclease activity A OS=Burkholderia mallei (strain NCTC 10229) GN=rraA PE=3 SV=1) HSP 1 Score: 190.274 bits (482), Expect = 1.035e-47 Identity = 86/158 (54.43%), Postives = 117/158 (74.05%), Query Frame = -1 Query: 149 LVTTAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILIS 622 + T ++CDA+ + +G LR L+P+F+ +G + F+GP TLK+FEDN L+R LE+ G GRVLVVDGGGSLRCA++GGN A+ NGWAGIVVNGC+RD DE+ C +GV ALA+HP K++K+G G P+ + GTRI G+W+YAD DG+L+S Sbjct: 2 MFATTDLCDAHEDRLAAGTLRVLEPVFRPFGGVRRFAGPAATLKLFEDNSLVRTALEQDGAGRVLVVDGGGSLRCALVGGNLGKLAEKNGWAGIVVNGCVRDSDELAECRVGVLALAAHPRKSDKRGAGVSDAPVDVRGTRIVPGDWIYADADGVLVS 159
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_BURM7 (Regulator of ribonuclease activity A OS=Burkholderia mallei (strain NCTC 10247) GN=rraA PE=3 SV=1) HSP 1 Score: 190.274 bits (482), Expect = 1.035e-47 Identity = 86/158 (54.43%), Postives = 117/158 (74.05%), Query Frame = -1 Query: 149 LVTTAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILIS 622 + T ++CDA+ + +G LR L+P+F+ +G + F+GP TLK+FEDN L+R LE+ G GRVLVVDGGGSLRCA++GGN A+ NGWAGIVVNGC+RD DE+ C +GV ALA+HP K++K+G G P+ + GTRI G+W+YAD DG+L+S Sbjct: 2 MFATTDLCDAHEDRLAAGTLRVLEPVFRPFGGVRRFAGPAATLKLFEDNSLVRTALEQDGAGRVLVVDGGGSLRCALVGGNLGKLAEKNGWAGIVVNGCVRDSDELAECRVGVLALAAHPRKSDKRGAGVSDAPVDVRGTRIVPGDWIYADADGVLVS 159
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_CUPTR (Regulator of ribonuclease activity A OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=rraA PE=3 SV=1) HSP 1 Score: 189.119 bits (479), Expect = 2.306e-47 Identity = 83/159 (52.20%), Postives = 114/159 (71.70%), Query Frame = -1 Query: 137 TAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAEL 613 T ++CDA+ + G LR + P+F+ +G++ F+GP TLKVFEDN L+R LE G GRVLV+DGGGSLRCA++GGN + A+ NGW GIVVNGCIRD E++ CDIG+RALA+HP K+ K+ +GE V + + G + G W+Y D DGIL++ +L Sbjct: 5 TTDLCDAHEDRLAEGTLRVMAPVFRAFGKQPAFAGPAATLKVFEDNSLVRATLESPGRGRVLVIDGGGSLRCALVGGNLGLLAEKNGWVGIVVNGCIRDTAELDVCDIGIRALAAHPQKSQKRNVGESEVTVQMPGAVVRPGNWIYVDVDGILVADDKL 163
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_RALSO (Regulator of ribonuclease activity A OS=Ralstonia solanacearum GN=rraA PE=3 SV=2) HSP 1 Score: 188.348 bits (477), Expect = 3.934e-47 Identity = 83/162 (51.23%), Postives = 115/162 (70.99%), Query Frame = -1 Query: 137 LVTTAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAEL 622 ++ ++CDA+ + SG +R L P+F+ +G R F+GP TLKVFEDN L+R LE+ G GRVLVVDGGGSLRCA++GGN A++NGW G++VNGC+RD E+ C++GV ALA+HP K+ KK GE+ + + + G I GEW+Y D DG+L+SR L Sbjct: 2 MIPVTDLCDAHEDQLASGAVRVLAPVFRSFGARAAFAGPAATLKVFEDNGLVRAMLEQPGEGRVLVVDGGGSLRCALVGGNLAKLAEDNGWEGVLVNGCVRDTRELAACNVGVHALAAHPRKSFKKNQGERDIGVQMPGAYIHPGEWIYGDEDGVLVSRERL 163
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_RALEH (Regulator of ribonuclease activity A OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=rraA PE=3 SV=1) HSP 1 Score: 187.578 bits (475), Expect = 6.710e-47 Identity = 83/159 (52.20%), Postives = 112/159 (70.44%), Query Frame = -1 Query: 137 TAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAEL 613 T ++CDA+ + G LR + P+F+ +G++ F+GP TLKVFEDN L+R LE G GRVLV+DGGGSLRCA++GGN + A+ NGW GIVVNGCIRD E++ CDIG+RALA HP K+ K+ +GE V + + G + G W+Y D DG+L+S L Sbjct: 5 TTDLCDAHEDRLADGTLRVMAPVFRAFGKQGAFAGPAATLKVFEDNSLVRTALEAPGQGRVLVIDGGGSLRCALVGGNLGLLAEKNGWVGIVVNGCIRDTAELDVCDIGIRALAVHPQKSQKRNVGESDVAVQMPGAVVRPGNWIYVDADGVLVSDERL 163
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_BURP8 (Regulator of ribonuclease activity A OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=rraA PE=3 SV=1) HSP 1 Score: 187.193 bits (474), Expect = 8.764e-47 Identity = 87/159 (54.72%), Postives = 116/159 (72.96%), Query Frame = -1 Query: 137 TAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAEL 613 TA++CDA+ + +G LR L P+F +GR F G VTLKVFEDN L+R LEEKG RVLVVDGGGSLRCA++GGN + NGWAGIVV GC+RD E+N C++G+ ALA+HP ++ K+G GE+ V + + G+ + GEW+YAD+DG+L+S A L Sbjct: 5 TADLCDAHEDQLTAGTLRVLDPVFSRFGRASRFGGEAVTLKVFEDNTLVRATLEEKGVARVLVVDGGGSLRCALVGGNLGKLGEKNGWAGIVVFGCVRDTLELNECNLGIIALATHPQRSQKRGGGERDVSLRLPGSVVRPGEWIYADSDGVLVSSAPL 163
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_BURPP (Regulator of ribonuclease activity A OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=rraA PE=3 SV=1) HSP 1 Score: 186.037 bits (471), Expect = 1.952e-46 Identity = 84/160 (52.50%), Postives = 115/160 (71.88%), Query Frame = -1 Query: 134 TAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELS 613 TA++CDA+ + G LR L+P+F ++ R + FSG VTLKVFEDN L+R LEEKG GRVLV+DGGGSLRCA++GGN A+ NGWAGIV+NGC+RD E+N ++G+ AL + P + K G GE+ V + + G + GEW+YAD DG+L++ A L+ Sbjct: 5 TADLCDAHEDQLALGTLRVLEPVFHLFSRAECFSGEAVTLKVFEDNALVRATLEEKGAGRVLVIDGGGSLRCALVGGNLAQLAEQNGWAGIVLNGCVRDALELNEVNVGIAALTTSPRRGQKLGTGERDVAVHLPGALVRPGEWVYADIDGVLVASAALN 164
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_BURXL (Regulator of ribonuclease activity A OS=Burkholderia xenovorans (strain LB400) GN=rraA PE=3 SV=1) HSP 1 Score: 184.882 bits (468), Expect = 4.349e-46 Identity = 86/159 (54.09%), Postives = 114/159 (71.70%), Query Frame = -1 Query: 137 TAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAEL 613 TA++CDA+ + G LR L+P+F ++ R FSG VTLKVFEDN L+R LEEKG GRVLVVDGGGS RCA++GGN AQ NGWAGIV+NGC+RD E+N ++G+ ALA+ P + K G GE+ V + + G + GEW+YAD+DG+L++ A L Sbjct: 5 TADLCDAHEDQLALGTLRVLEPVFHLFSRAGCFSGEAVTLKVFEDNALVRATLEEKGAGRVLVVDGGGSQRCALVGGNLAQIAQQNGWAGIVLNGCVRDTLELNEVNVGIAALATCPRRGQKLGTGERGVAVQLPGALVRPGEWIYADSDGVLVASAAL 163 The following BLAST results are available for this feature:
BLAST of CN188238 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 185
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188238 ID=CN188238; Name=CN188238; organism=Citrus sinensis; type=EST; length=781bpback to top |