CN188238

Overview
NameCN188238
Unique NameCN188238
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length781
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_BURMS (Regulator of ribonuclease activity A OS=Burkholderia mallei (strain SAVP1) GN=rraA PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.035e-47
Identity = 86/158 (54.43%), Postives = 117/158 (74.05%), Query Frame = -1
Query:  149 LVTTAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILIS 622
            +  T ++CDA+   + +G LR L+P+F+ +G  + F+GP  TLK+FEDN L+R  LE+ G GRVLVVDGGGSLRCA++GGN    A+ NGWAGIVVNGC+RD DE+  C +GV ALA+HP K++K+G G    P+ + GTRI  G+W+YAD DG+L+S
Sbjct:    2 MFATTDLCDAHEDRLAAGTLRVLEPVFRPFGGVRRFAGPAATLKLFEDNSLVRTALEQDGAGRVLVVDGGGSLRCALVGGNLGKLAEKNGWAGIVVNGCVRDSDELAECRVGVLALAAHPRKSDKRGAGVSDAPVDVRGTRIVPGDWIYADADGVLVS 159          
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_BURMA (Regulator of ribonuclease activity A OS=Burkholderia mallei GN=rraA PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.035e-47
Identity = 86/158 (54.43%), Postives = 117/158 (74.05%), Query Frame = -1
Query:  149 LVTTAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILIS 622
            +  T ++CDA+   + +G LR L+P+F+ +G  + F+GP  TLK+FEDN L+R  LE+ G GRVLVVDGGGSLRCA++GGN    A+ NGWAGIVVNGC+RD DE+  C +GV ALA+HP K++K+G G    P+ + GTRI  G+W+YAD DG+L+S
Sbjct:    2 MFATTDLCDAHEDRLAAGTLRVLEPVFRPFGGVRRFAGPAATLKLFEDNSLVRTALEQDGAGRVLVVDGGGSLRCALVGGNLGKLAEKNGWAGIVVNGCVRDSDELAECRVGVLALAAHPRKSDKRGAGVSDAPVDVRGTRIVPGDWIYADADGVLVS 159          
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_BURM9 (Regulator of ribonuclease activity A OS=Burkholderia mallei (strain NCTC 10229) GN=rraA PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.035e-47
Identity = 86/158 (54.43%), Postives = 117/158 (74.05%), Query Frame = -1
Query:  149 LVTTAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILIS 622
            +  T ++CDA+   + +G LR L+P+F+ +G  + F+GP  TLK+FEDN L+R  LE+ G GRVLVVDGGGSLRCA++GGN    A+ NGWAGIVVNGC+RD DE+  C +GV ALA+HP K++K+G G    P+ + GTRI  G+W+YAD DG+L+S
Sbjct:    2 MFATTDLCDAHEDRLAAGTLRVLEPVFRPFGGVRRFAGPAATLKLFEDNSLVRTALEQDGAGRVLVVDGGGSLRCALVGGNLGKLAEKNGWAGIVVNGCVRDSDELAECRVGVLALAAHPRKSDKRGAGVSDAPVDVRGTRIVPGDWIYADADGVLVS 159          
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_BURM7 (Regulator of ribonuclease activity A OS=Burkholderia mallei (strain NCTC 10247) GN=rraA PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.035e-47
Identity = 86/158 (54.43%), Postives = 117/158 (74.05%), Query Frame = -1
Query:  149 LVTTAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILIS 622
            +  T ++CDA+   + +G LR L+P+F+ +G  + F+GP  TLK+FEDN L+R  LE+ G GRVLVVDGGGSLRCA++GGN    A+ NGWAGIVVNGC+RD DE+  C +GV ALA+HP K++K+G G    P+ + GTRI  G+W+YAD DG+L+S
Sbjct:    2 MFATTDLCDAHEDRLAAGTLRVLEPVFRPFGGVRRFAGPAATLKLFEDNSLVRTALEQDGAGRVLVVDGGGSLRCALVGGNLGKLAEKNGWAGIVVNGCVRDSDELAECRVGVLALAAHPRKSDKRGAGVSDAPVDVRGTRIVPGDWIYADADGVLVS 159          
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_CUPTR (Regulator of ribonuclease activity A OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=rraA PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.306e-47
Identity = 83/159 (52.20%), Postives = 114/159 (71.70%), Query Frame = -1
Query:  137 TAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAEL 613
            T ++CDA+   +  G LR + P+F+ +G++  F+GP  TLKVFEDN L+R  LE  G GRVLV+DGGGSLRCA++GGN  + A+ NGW GIVVNGCIRD  E++ CDIG+RALA+HP K+ K+ +GE  V + + G  +  G W+Y D DGIL++  +L
Sbjct:    5 TTDLCDAHEDRLAEGTLRVMAPVFRAFGKQPAFAGPAATLKVFEDNSLVRATLESPGRGRVLVIDGGGSLRCALVGGNLGLLAEKNGWVGIVVNGCIRDTAELDVCDIGIRALAAHPQKSQKRNVGESEVTVQMPGAVVRPGNWIYVDVDGILVADDKL 163          
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_RALSO (Regulator of ribonuclease activity A OS=Ralstonia solanacearum GN=rraA PE=3 SV=2)

HSP 1 Score: 188.348 bits (477), Expect = 3.934e-47
Identity = 83/162 (51.23%), Postives = 115/162 (70.99%), Query Frame = -1
Query:  137 LVTTAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAEL 622
            ++   ++CDA+   + SG +R L P+F+ +G R  F+GP  TLKVFEDN L+R  LE+ G GRVLVVDGGGSLRCA++GGN    A++NGW G++VNGC+RD  E+  C++GV ALA+HP K+ KK  GE+ + + + G  I  GEW+Y D DG+L+SR  L
Sbjct:    2 MIPVTDLCDAHEDQLASGAVRVLAPVFRSFGARAAFAGPAATLKVFEDNGLVRAMLEQPGEGRVLVVDGGGSLRCALVGGNLAKLAEDNGWEGVLVNGCVRDTRELAACNVGVHALAAHPRKSFKKNQGERDIGVQMPGAYIHPGEWIYGDEDGVLVSRERL 163          
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_RALEH (Regulator of ribonuclease activity A OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=rraA PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 6.710e-47
Identity = 83/159 (52.20%), Postives = 112/159 (70.44%), Query Frame = -1
Query:  137 TAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAEL 613
            T ++CDA+   +  G LR + P+F+ +G++  F+GP  TLKVFEDN L+R  LE  G GRVLV+DGGGSLRCA++GGN  + A+ NGW GIVVNGCIRD  E++ CDIG+RALA HP K+ K+ +GE  V + + G  +  G W+Y D DG+L+S   L
Sbjct:    5 TTDLCDAHEDRLADGTLRVMAPVFRAFGKQGAFAGPAATLKVFEDNSLVRTALEAPGQGRVLVIDGGGSLRCALVGGNLGLLAEKNGWVGIVVNGCIRDTAELDVCDIGIRALAVHPQKSQKRNVGESDVAVQMPGAVVRPGNWIYVDADGVLVSDERL 163          
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_BURP8 (Regulator of ribonuclease activity A OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=rraA PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 8.764e-47
Identity = 87/159 (54.72%), Postives = 116/159 (72.96%), Query Frame = -1
Query:  137 TAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAEL 613
            TA++CDA+   + +G LR L P+F  +GR   F G  VTLKVFEDN L+R  LEEKG  RVLVVDGGGSLRCA++GGN     + NGWAGIVV GC+RD  E+N C++G+ ALA+HP ++ K+G GE+ V + + G+ +  GEW+YAD+DG+L+S A L
Sbjct:    5 TADLCDAHEDQLTAGTLRVLDPVFSRFGRASRFGGEAVTLKVFEDNTLVRATLEEKGVARVLVVDGGGSLRCALVGGNLGKLGEKNGWAGIVVFGCVRDTLELNECNLGIIALATHPQRSQKRGGGERDVSLRLPGSVVRPGEWIYADSDGVLVSSAPL 163          
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_BURPP (Regulator of ribonuclease activity A OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=rraA PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.952e-46
Identity = 84/160 (52.50%), Postives = 115/160 (71.88%), Query Frame = -1
Query:  134 TAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELS 613
            TA++CDA+   +  G LR L+P+F ++ R + FSG  VTLKVFEDN L+R  LEEKG GRVLV+DGGGSLRCA++GGN    A+ NGWAGIV+NGC+RD  E+N  ++G+ AL + P +  K G GE+ V + + G  +  GEW+YAD DG+L++ A L+
Sbjct:    5 TADLCDAHEDQLALGTLRVLEPVFHLFSRAECFSGEAVTLKVFEDNALVRATLEEKGAGRVLVIDGGGSLRCALVGGNLAQLAEQNGWAGIVLNGCVRDALELNEVNVGIAALTTSPRRGQKLGTGERDVAVHLPGALVRPGEWVYADIDGVLVASAALN 164          
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_BURXL (Regulator of ribonuclease activity A OS=Burkholderia xenovorans (strain LB400) GN=rraA PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 4.349e-46
Identity = 86/159 (54.09%), Postives = 114/159 (71.70%), Query Frame = -1
Query:  137 TAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAEL 613
            TA++CDA+   +  G LR L+P+F ++ R   FSG  VTLKVFEDN L+R  LEEKG GRVLVVDGGGS RCA++GGN    AQ NGWAGIV+NGC+RD  E+N  ++G+ ALA+ P +  K G GE+ V + + G  +  GEW+YAD+DG+L++ A L
Sbjct:    5 TADLCDAHEDQLALGTLRVLEPVFHLFSRAGCFSGEAVTLKVFEDNALVRATLEEKGAGRVLVVDGGGSQRCALVGGNLAQIAQQNGWAGIVLNGCVRDTLELNEVNVGIAALATCPRRGQKLGTGERGVAVQLPGALVRPGEWIYADSDGVLVASAAL 163          
The following BLAST results are available for this feature:
BLAST of CN188238 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 185
Match NameE-valueIdentityDescription
RRAA_BURMS1.035e-4754.43Regulator of ribonuclease activity A OS=Burkholder... [more]
RRAA_BURMA1.035e-4754.43Regulator of ribonuclease activity A OS=Burkholder... [more]
RRAA_BURM91.035e-4754.43Regulator of ribonuclease activity A OS=Burkholder... [more]
RRAA_BURM71.035e-4754.43Regulator of ribonuclease activity A OS=Burkholder... [more]
RRAA_CUPTR2.306e-4752.20Regulator of ribonuclease activity A OS=Cupriavidu... [more]
RRAA_RALSO3.934e-4751.23Regulator of ribonuclease activity A OS=Ralstonia ... [more]
RRAA_RALEH6.710e-4752.20Regulator of ribonuclease activity A OS=Ralstonia ... [more]
RRAA_BURP88.764e-4754.72Regulator of ribonuclease activity A OS=Burkholder... [more]
RRAA_BURPP1.952e-4652.50Regulator of ribonuclease activity A OS=Burkholder... [more]
RRAA_BURXL4.349e-4654.09Regulator of ribonuclease activity A OS=Burkholder... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005L13_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005L13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188238 ID=CN188238; Name=CN188238; organism=Citrus sinensis; type=EST; length=781bp
TTTTTTTTTTTTTTTTCAGTTCATCTAAAATTAATAAATGGGCTCGTTAA
AACAAGTTAGGCATAATAGTAGGGGAATACATTCCCGGAAAAGCACCTGC
AGTTTTGGTATTTGCAAAGGAAAGGACTCATACAGATAACTCTGCCCGAG
AAATCAAGATGCCATCTGTGTCAGCATAAAGCCATTCGCCATCACTGATT
CTTGTCCCACCAATAGTTATTGGCACATGTTTCTCCCCAATCCCCTTCTT
ATTGGCTTTCATGGGATGAGAAGCCAGTGCTCTCACACCAATATCACACC
CATTAATTTCATCAACATCCCTAATACACCCATTCACAACTATTCCAGCC
CATCCGTTATTCTGGGCTTGTACGACAGGGTTACCCCCCAATATAGCGCA
CCGCAAACTCCCACCCCCATCTACAACAAGAACTCTTCCATTACCCTTCT
CCTCAAGAAACTCACGAATCAAAACATTGTCTTCAAATACCTTGAGGGTG
ACTATTGGTCCAGAGAATACTTGGCGCCGACCATATATCTGAAAAATTGG
CTGGAGAGCACGTAGCTCGCCACTCACAATCAGCTGTGGGTTTGCATCAC
ATACTTCAGCAGTCGTAACTAATGCCATTTATTCTAAGCACCTCAAACAA
AGCTTACTGAGATTTGAGACAAAAGAATTAAAATTGAATAATAGTTTAAT
TTACAATATTCACTTTTAATCAATGAGGAATACAACAACAATCAGTTATT
TACAAAATTAAATAATACAATGGAATCAACC
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