CN188238

Overview
NameCN188238
Unique NameCN188238
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length781
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_SHESH (Regulator of ribonuclease activity A OS=Shewanella sediminis (strain HAW-EB3) GN=rraA PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.699e-29
Identity = 66/161 (40.99%), Postives = 98/161 (60.87%), Query Frame = -1
Query:  131 TAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 613
            T+E+CD    ++       ++P+F  YG    F G I T+K FEDN LI E L++ G G+VL+VDGGGSLR A+L  +    A +N W GI++ G +RDVD +   DIG++ALAS P+ A++  +GE  +P+  GG      + +YAD  GI++S   L +
Sbjct:    5 TSELCDTYIDVV-----DVVEPMFSNYGGCNSFGGSISTIKCFEDNGLIAEALQQDGEGKVLLVDGGGSLRRALLDASIAQLAVDNKWEGIIIYGSVRDVDALEDLDIGIQALASIPVGADENSVGELEIPVNFGGVTFLPLDHVYADNTGIILSPEPLDM 160          
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_MYCLE (Regulator of ribonuclease activity A OS=Mycobacterium leprae GN=rraA PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.699e-29
Identity = 62/154 (40.26%), Postives = 97/154 (62.99%), Query Frame = -1
Query:  152 TAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILI 613
            TA++ D+     +  ++R+    F+ +G    F+GPI T++ F+DN L++  L +   G VLVVDG GSL  A++G      A +NGWAG++VNG +RD   + G DIG++AL ++P K+ K G GE+HV + +GG     GE +Y+D DGI++
Sbjct:    8 TADLVDS-----IGVDVRSCDLQFRQFGGCSEFAGPISTVRCFQDNALLKSVLSQTSAGGVLVVDGAGSLHTALVGDVIAELAHSNGWAGLIVNGAVRDAAALRGIDIGIKALGTNPRKSTKIGTGERHVEVNLGGVTFVPGEVVYSDDDGIVV 156          
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_MYCLB (Regulator of ribonuclease activity A OS=Mycobacterium leprae (strain Br4923) GN=rraA PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.699e-29
Identity = 62/154 (40.26%), Postives = 97/154 (62.99%), Query Frame = -1
Query:  152 TAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILI 613
            TA++ D+     +  ++R+    F+ +G    F+GPI T++ F+DN L++  L +   G VLVVDG GSL  A++G      A +NGWAG++VNG +RD   + G DIG++AL ++P K+ K G GE+HV + +GG     GE +Y+D DGI++
Sbjct:    8 TADLVDS-----IGVDVRSCDLQFRQFGGCSEFAGPISTVRCFQDNALLKSVLSQTSAGGVLVVDGAGSLHTALVGDVIAELAHSNGWAGLIVNGAVRDAAALRGIDIGIKALGTNPRKSTKIGTGERHVEVNLGGVTFVPGEVVYSDDDGIVV 156          
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_HAEIN (Regulator of ribonuclease activity A OS=Haemophilus influenzae GN=rraA PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.699e-29
Identity = 61/163 (37.42%), Postives = 97/163 (59.51%), Query Frame = -1
Query:  131 VTTAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 619
            + T+E+CD     + + ++  ++PIF  +G    F G + T+K FE N LI E LEE G GRVLV+DGGG++R  ++       A +NGW GI+V G +R + ++   DIG+ ALA  P+ A++   GE  +P+  GG      +++YAD  GI++S+  L +
Sbjct:    3 IDTSELCD-----LYAEQVDVVEPIFSSFGGVSNFYGKVTTVKCFESNGLIAEVLEENGEGRVLVIDGGGAVRRGLIDAELAQLAVDNGWEGIIVYGAVRQIQQLENLDIGIHALAPIPVSADESSAGESDIPVNFGGVTFFPEDYIYADLTGIILSQEPLDL 160          
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_HAEIG (Regulator of ribonuclease activity A OS=Haemophilus influenzae (strain PittGG) GN=rraA PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.699e-29
Identity = 61/163 (37.42%), Postives = 97/163 (59.51%), Query Frame = -1
Query:  131 VTTAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 619
            + T+E+CD     + + ++  ++PIF  +G    F G + T+K FE N LI E LEE G GRVLV+DGGG++R  ++       A +NGW GI+V G +R + ++   DIG+ ALA  P+ A++   GE  +P+  GG      +++YAD  GI++S+  L +
Sbjct:    3 IDTSELCD-----LYAEQVDVVEPIFSSFGGVSNFYGKVTTVKCFESNGLIAEVLEENGEGRVLVIDGGGAVRRGLIDAELAQLAVDNGWEGIIVYGAVRQIQQLENLDIGIHALAPIPVSADESSAGESDIPVNFGGVTFFPEDYIYADLTGIILSQEPLDL 160          
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_HAEIE (Regulator of ribonuclease activity A OS=Haemophilus influenzae (strain PittEE) GN=rraA PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.699e-29
Identity = 61/163 (37.42%), Postives = 97/163 (59.51%), Query Frame = -1
Query:  131 VTTAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 619
            + T+E+CD     + + ++  ++PIF  +G    F G + T+K FE N LI E LEE G GRVLV+DGGG++R  ++       A +NGW GI+V G +R + ++   DIG+ ALA  P+ A++   GE  +P+  GG      +++YAD  GI++S+  L +
Sbjct:    3 IDTSELCD-----LYAEQVDVVEPIFSSFGGVSNFYGKVTTVKCFESNGLIAEVLEENGEGRVLVIDGGGAVRRGLIDAELAQLAVDNGWEGIIVYGAVRQIQQLENLDIGIHALAPIPVSADESSAGESDIPVNFGGVTFFPEDYIYADLTGIILSQEPLDL 160          
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_HAEI8 (Regulator of ribonuclease activity A OS=Haemophilus influenzae (strain 86-028NP) GN=rraA PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.699e-29
Identity = 61/163 (37.42%), Postives = 97/163 (59.51%), Query Frame = -1
Query:  131 VTTAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 619
            + T+E+CD     + + ++  ++PIF  +G    F G + T+K FE N LI E LEE G GRVLV+DGGG++R  ++       A +NGW GI+V G +R + ++   DIG+ ALA  P+ A++   GE  +P+  GG      +++YAD  GI++S+  L +
Sbjct:    3 IDTSELCD-----LYAEQVDVVEPIFSSFGGVSHFYGKVTTVKCFESNGLIAEVLEENGEGRVLVIDGGGAVRRGLIDAELAQLAVDNGWEGIIVYGAVRQIQQLENLDIGIHALAPIPVSADESSAGESDIPVNFGGVTFFPEDYIYADLTGIILSQEPLDL 160          
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_PROMH (Regulator of ribonuclease activity A OS=Proteus mirabilis (strain HI4320) GN=rraA PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.310e-29
Identity = 63/161 (39.13%), Postives = 96/161 (59.63%), Query Frame = -1
Query:  131 TAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 613
            T+E+CD     I   ++  ++P+F  +G R  F G I T+K FEDN L+ + LEE G  R+L+VDGGGS+R A++       A  N W GIVV G +R VD ++  D+G++A+A+ P     +GIG+  + +  GG     G++LYAD  GI++S   L +
Sbjct:    5 TSELCD-----IYQEDINVVEPLFSNFGGRSSFGGQITTVKCFEDNGLLYDLLEENGKDRILLVDGGGSVRKALVDAELAQLAVLNEWEGIVVYGAVRQVDALSELDLGIQAMAAIPAGCPSEGIGDSDIRVNFGGVTFFSGDYLYADNTGIILSEEPLGL 160          
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_TOLAT (Regulator of ribonuclease activity A OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=rraA PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.076e-28
Identity = 60/161 (37.27%), Postives = 100/161 (62.11%), Query Frame = -1
Query:  131 TAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 613
            T+++CD     I   ++  ++P+F  +G R  F G + T+K FE N +IR+ ++E G GRVL++DGGGSLR A++  +    A +NGW GI+  G +R+VD +   +IG++ALAS P+ A++   G+  +P+  GG      + +YADT G+++S   L +
Sbjct:    5 TSQLCD-----IYQDQVDVVEPMFSTFGGRSSFGGLVTTIKCFEANGIIRQIVKESGVGRVLLIDGGGSLRRALIDADIAAIAADNGWEGIICYGSVREVDALADLEIGIQALASIPVGADEDDTGDSELPVNFGGVTFLPEDHIYADTTGVILSPEPLDI 160          
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_COLP3 (Regulator of ribonuclease activity A OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=rraA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.406e-28
Identity = 68/161 (42.24%), Postives = 96/161 (59.63%), Query Frame = -1
Query:  131 TAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 613
            T+E+CD    LI       + PIF  YG R  F+G +VTLK FE   LI E +   G G+VLV+DGGGS R A++       A NNGW GIV  G +RDVD ++G DIG++AL + P+ A+++ IGE  + I   G  +   +++YAD  GI++S   L +
Sbjct:    5 TSELCDFYADLI-----DVVDPIFCNYGGRSSFAGKVVTLKCFEHLGLINELVATYGTGKVLVIDGGGSTRRALIDLGIAQCAANNGWEGIVCYGSVRDVDALDGVDIGIQALGAIPVGASEQNIGETDMAINFAGVTLLPDDYIYADNTGIILSPEALEI 160          
The following BLAST results are available for this feature:
BLAST of CN188238 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 185
Match NameE-valueIdentityDescription
RRAA_SHESH3.699e-2940.99Regulator of ribonuclease activity A OS=Shewanella... [more]
RRAA_MYCLE3.699e-2940.26Regulator of ribonuclease activity A OS=Mycobacter... [more]
RRAA_MYCLB3.699e-2940.26Regulator of ribonuclease activity A OS=Mycobacter... [more]
RRAA_HAEIN3.699e-2937.42Regulator of ribonuclease activity A OS=Haemophilu... [more]
RRAA_HAEIG3.699e-2937.42Regulator of ribonuclease activity A OS=Haemophilu... [more]
RRAA_HAEIE3.699e-2937.42Regulator of ribonuclease activity A OS=Haemophilu... [more]
RRAA_HAEI83.699e-2937.42Regulator of ribonuclease activity A OS=Haemophilu... [more]
RRAA_PROMH6.310e-2939.13Regulator of ribonuclease activity A OS=Proteus mi... [more]
RRAA_TOLAT1.076e-2837.27Regulator of ribonuclease activity A OS=Tolumonas ... [more]
RRAA_COLP31.406e-2842.24Regulator of ribonuclease activity A OS=Colwellia ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005L13_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005L13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188238 ID=CN188238; Name=CN188238; organism=Citrus sinensis; type=EST; length=781bp
TTTTTTTTTTTTTTTTCAGTTCATCTAAAATTAATAAATGGGCTCGTTAA
AACAAGTTAGGCATAATAGTAGGGGAATACATTCCCGGAAAAGCACCTGC
AGTTTTGGTATTTGCAAAGGAAAGGACTCATACAGATAACTCTGCCCGAG
AAATCAAGATGCCATCTGTGTCAGCATAAAGCCATTCGCCATCACTGATT
CTTGTCCCACCAATAGTTATTGGCACATGTTTCTCCCCAATCCCCTTCTT
ATTGGCTTTCATGGGATGAGAAGCCAGTGCTCTCACACCAATATCACACC
CATTAATTTCATCAACATCCCTAATACACCCATTCACAACTATTCCAGCC
CATCCGTTATTCTGGGCTTGTACGACAGGGTTACCCCCCAATATAGCGCA
CCGCAAACTCCCACCCCCATCTACAACAAGAACTCTTCCATTACCCTTCT
CCTCAAGAAACTCACGAATCAAAACATTGTCTTCAAATACCTTGAGGGTG
ACTATTGGTCCAGAGAATACTTGGCGCCGACCATATATCTGAAAAATTGG
CTGGAGAGCACGTAGCTCGCCACTCACAATCAGCTGTGGGTTTGCATCAC
ATACTTCAGCAGTCGTAACTAATGCCATTTATTCTAAGCACCTCAAACAA
AGCTTACTGAGATTTGAGACAAAAGAATTAAAATTGAATAATAGTTTAAT
TTACAATATTCACTTTTAATCAATGAGGAATACAACAACAATCAGTTATT
TACAAAATTAAATAATACAATGGAATCAACC
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