CN188238
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_SHESH (Regulator of ribonuclease activity A OS=Shewanella sediminis (strain HAW-EB3) GN=rraA PE=3 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 3.699e-29 Identity = 66/161 (40.99%), Postives = 98/161 (60.87%), Query Frame = -1 Query: 131 TAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 613 T+E+CD ++ ++P+F YG F G I T+K FEDN LI E L++ G G+VL+VDGGGSLR A+L + A +N W GI++ G +RDVD + DIG++ALAS P+ A++ +GE +P+ GG + +YAD GI++S L + Sbjct: 5 TSELCDTYIDVV-----DVVEPMFSNYGGCNSFGGSISTIKCFEDNGLIAEALQQDGEGKVLLVDGGGSLRRALLDASIAQLAVDNKWEGIIIYGSVRDVDALEDLDIGIQALASIPVGADENSVGELEIPVNFGGVTFLPLDHVYADNTGIILSPEPLDM 160
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_MYCLE (Regulator of ribonuclease activity A OS=Mycobacterium leprae GN=rraA PE=3 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 3.699e-29 Identity = 62/154 (40.26%), Postives = 97/154 (62.99%), Query Frame = -1 Query: 152 TAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILI 613 TA++ D+ + ++R+ F+ +G F+GPI T++ F+DN L++ L + G VLVVDG GSL A++G A +NGWAG++VNG +RD + G DIG++AL ++P K+ K G GE+HV + +GG GE +Y+D DGI++ Sbjct: 8 TADLVDS-----IGVDVRSCDLQFRQFGGCSEFAGPISTVRCFQDNALLKSVLSQTSAGGVLVVDGAGSLHTALVGDVIAELAHSNGWAGLIVNGAVRDAAALRGIDIGIKALGTNPRKSTKIGTGERHVEVNLGGVTFVPGEVVYSDDDGIVV 156
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_MYCLB (Regulator of ribonuclease activity A OS=Mycobacterium leprae (strain Br4923) GN=rraA PE=3 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 3.699e-29 Identity = 62/154 (40.26%), Postives = 97/154 (62.99%), Query Frame = -1 Query: 152 TAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILI 613 TA++ D+ + ++R+ F+ +G F+GPI T++ F+DN L++ L + G VLVVDG GSL A++G A +NGWAG++VNG +RD + G DIG++AL ++P K+ K G GE+HV + +GG GE +Y+D DGI++ Sbjct: 8 TADLVDS-----IGVDVRSCDLQFRQFGGCSEFAGPISTVRCFQDNALLKSVLSQTSAGGVLVVDGAGSLHTALVGDVIAELAHSNGWAGLIVNGAVRDAAALRGIDIGIKALGTNPRKSTKIGTGERHVEVNLGGVTFVPGEVVYSDDDGIVV 156
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_HAEIN (Regulator of ribonuclease activity A OS=Haemophilus influenzae GN=rraA PE=3 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 3.699e-29 Identity = 61/163 (37.42%), Postives = 97/163 (59.51%), Query Frame = -1 Query: 131 VTTAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 619 + T+E+CD + + ++ ++PIF +G F G + T+K FE N LI E LEE G GRVLV+DGGG++R ++ A +NGW GI+V G +R + ++ DIG+ ALA P+ A++ GE +P+ GG +++YAD GI++S+ L + Sbjct: 3 IDTSELCD-----LYAEQVDVVEPIFSSFGGVSNFYGKVTTVKCFESNGLIAEVLEENGEGRVLVIDGGGAVRRGLIDAELAQLAVDNGWEGIIVYGAVRQIQQLENLDIGIHALAPIPVSADESSAGESDIPVNFGGVTFFPEDYIYADLTGIILSQEPLDL 160
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_HAEIG (Regulator of ribonuclease activity A OS=Haemophilus influenzae (strain PittGG) GN=rraA PE=3 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 3.699e-29 Identity = 61/163 (37.42%), Postives = 97/163 (59.51%), Query Frame = -1 Query: 131 VTTAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 619 + T+E+CD + + ++ ++PIF +G F G + T+K FE N LI E LEE G GRVLV+DGGG++R ++ A +NGW GI+V G +R + ++ DIG+ ALA P+ A++ GE +P+ GG +++YAD GI++S+ L + Sbjct: 3 IDTSELCD-----LYAEQVDVVEPIFSSFGGVSNFYGKVTTVKCFESNGLIAEVLEENGEGRVLVIDGGGAVRRGLIDAELAQLAVDNGWEGIIVYGAVRQIQQLENLDIGIHALAPIPVSADESSAGESDIPVNFGGVTFFPEDYIYADLTGIILSQEPLDL 160
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_HAEIE (Regulator of ribonuclease activity A OS=Haemophilus influenzae (strain PittEE) GN=rraA PE=3 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 3.699e-29 Identity = 61/163 (37.42%), Postives = 97/163 (59.51%), Query Frame = -1 Query: 131 VTTAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 619 + T+E+CD + + ++ ++PIF +G F G + T+K FE N LI E LEE G GRVLV+DGGG++R ++ A +NGW GI+V G +R + ++ DIG+ ALA P+ A++ GE +P+ GG +++YAD GI++S+ L + Sbjct: 3 IDTSELCD-----LYAEQVDVVEPIFSSFGGVSNFYGKVTTVKCFESNGLIAEVLEENGEGRVLVIDGGGAVRRGLIDAELAQLAVDNGWEGIIVYGAVRQIQQLENLDIGIHALAPIPVSADESSAGESDIPVNFGGVTFFPEDYIYADLTGIILSQEPLDL 160
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_HAEI8 (Regulator of ribonuclease activity A OS=Haemophilus influenzae (strain 86-028NP) GN=rraA PE=3 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 3.699e-29 Identity = 61/163 (37.42%), Postives = 97/163 (59.51%), Query Frame = -1 Query: 131 VTTAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 619 + T+E+CD + + ++ ++PIF +G F G + T+K FE N LI E LEE G GRVLV+DGGG++R ++ A +NGW GI+V G +R + ++ DIG+ ALA P+ A++ GE +P+ GG +++YAD GI++S+ L + Sbjct: 3 IDTSELCD-----LYAEQVDVVEPIFSSFGGVSHFYGKVTTVKCFESNGLIAEVLEENGEGRVLVIDGGGAVRRGLIDAELAQLAVDNGWEGIIVYGAVRQIQQLENLDIGIHALAPIPVSADESSAGESDIPVNFGGVTFFPEDYIYADLTGIILSQEPLDL 160
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_PROMH (Regulator of ribonuclease activity A OS=Proteus mirabilis (strain HI4320) GN=rraA PE=3 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 6.310e-29 Identity = 63/161 (39.13%), Postives = 96/161 (59.63%), Query Frame = -1 Query: 131 TAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 613 T+E+CD I ++ ++P+F +G R F G I T+K FEDN L+ + LEE G R+L+VDGGGS+R A++ A N W GIVV G +R VD ++ D+G++A+A+ P +GIG+ + + GG G++LYAD GI++S L + Sbjct: 5 TSELCD-----IYQEDINVVEPLFSNFGGRSSFGGQITTVKCFEDNGLLYDLLEENGKDRILLVDGGGSVRKALVDAELAQLAVLNEWEGIVVYGAVRQVDALSELDLGIQAMAAIPAGCPSEGIGDSDIRVNFGGVTFFSGDYLYADNTGIILSEEPLGL 160
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_TOLAT (Regulator of ribonuclease activity A OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=rraA PE=3 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 1.076e-28 Identity = 60/161 (37.27%), Postives = 100/161 (62.11%), Query Frame = -1 Query: 131 TAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 613 T+++CD I ++ ++P+F +G R F G + T+K FE N +IR+ ++E G GRVL++DGGGSLR A++ + A +NGW GI+ G +R+VD + +IG++ALAS P+ A++ G+ +P+ GG + +YADT G+++S L + Sbjct: 5 TSQLCD-----IYQDQVDVVEPMFSTFGGRSSFGGLVTTIKCFEANGIIRQIVKESGVGRVLLIDGGGSLRRALIDADIAAIAADNGWEGIICYGSVREVDALADLEIGIQALASIPVGADEDDTGDSELPVNFGGVTFLPEDHIYADTTGVILSPEPLDI 160
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_COLP3 (Regulator of ribonuclease activity A OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=rraA PE=3 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 1.406e-28 Identity = 68/161 (42.24%), Postives = 96/161 (59.63%), Query Frame = -1 Query: 131 TAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 613 T+E+CD LI + PIF YG R F+G +VTLK FE LI E + G G+VLV+DGGGS R A++ A NNGW GIV G +RDVD ++G DIG++AL + P+ A+++ IGE + I G + +++YAD GI++S L + Sbjct: 5 TSELCDFYADLI-----DVVDPIFCNYGGRSSFAGKVVTLKCFEHLGLINELVATYGTGKVLVIDGGGSTRRALIDLGIAQCAANNGWEGIVCYGSVRDVDALDGVDIGIQALGAIPVGASEQNIGETDMAINFAGVTLLPDDYIYADNTGIILSPEALEI 160 The following BLAST results are available for this feature:
BLAST of CN188238 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 185
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188238 ID=CN188238; Name=CN188238; organism=Citrus sinensis; type=EST; length=781bpback to top |