CN188238

Overview
NameCN188238
Unique NameCN188238
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length781
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_PSEPG (Regulator of ribonuclease activity A OS=Pseudomonas putida (strain GB-1) GN=rraA PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.150e-39
Identity = 78/161 (48.45%), Postives = 110/161 (68.32%), Query Frame = -1
Query:  131 TAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 613
            T ++CDA P L+     + L+P+F  +G R  F G IVT+K FEDN L++E +E  G G+VLVVDGGGSLR A+LG     +A  NGW G+V+ GC+RDVD +   D+GV+ALASHPMK +K+GIG+ +V +   G     GE++YAD +G+L+S + L +
Sbjct:    6 TPDLCDAYPDLV-----QVLEPMFSNFGGRDSFGGQIVTIKCFEDNSLVKEQVELDGKGKVLVVDGGGSLRRALLGDMLAEKAAKNGWEGLVIYGCVRDVDVLIQTDVGVQALASHPMKTDKRGIGDLNVVVAFAGVTFRPGEYVYADNNGVLVSPSPLEM 161          
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_PSEU5 (Regulator of ribonuclease activity A OS=Pseudomonas stutzeri (strain A1501) GN=rraA PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 8.784e-39
Identity = 75/161 (46.58%), Postives = 112/161 (69.57%), Query Frame = -1
Query:  131 TAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 613
            T ++CDA P L+     + ++P+F  +G R  F G IVT+K FEDN L+++ ++  G G+V+VVDGGGSLR A+LG     +A  NGW G+++ GC+RDVD +   ++GV+ALASHPMK +K+GIG+ +VP+T  G     GE++YAD +GI++S   LS+
Sbjct:    5 TPDLCDAYPDLV-----QVVEPLFSNFGGRDSFGGEIVTIKCFEDNSLVKDQVDVDGTGKVMVVDGGGSLRRALLGDMLAEKAARNGWEGLIIYGCVRDVDVLAQTELGVQALASHPMKTDKRGIGDLNVPVTFCGVTFRPGEYVYADNNGIIVSPEPLSM 160          
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_HAHCH (Regulator of ribonuclease activity A OS=Hahella chejuensis (strain KCTC 2396) GN=rraA PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.498e-38
Identity = 74/161 (45.96%), Postives = 111/161 (68.94%), Query Frame = -1
Query:  131 TAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 613
            T ++CDA PQL+       ++P+FQ +G +  F G IVT+K FEDN ++++ +++ G+G+V+VVDGGGS R A+LG     +A  NGW GI++ GCIRDVD I   D+GV+AL +HPMK +K+GIG+ +  IT GG     G ++YAD +G+++S   LS+
Sbjct:    5 TPDLCDAYPQLV-----SVVEPMFQNFGAKSSFGGEIVTVKCFEDNSVVKQQVDQPGHGKVMVVDGGGSKRAALLGDMLAEKAAANGWEGIIIYGCIRDVDVIRQTDLGVQALGTHPMKTDKRGIGDLNADITFGGVTFKPGHYVYADNNGVIVSPEPLSM 160          
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_PSEFL (Regulator of ribonuclease activity A OS=Pseudomonas fluorescens GN=rraA PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 9.712e-38
Identity = 74/161 (45.96%), Postives = 110/161 (68.32%), Query Frame = -1
Query:  131 TAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 613
            T ++CDA P+L+     + ++P+F  +G R  F G IVT+K FEDN L++E  ++ G G+VLVVDGGGSLR A+LG     +A  NGW G+V+ GC+RDVD +   D+GV+ALA HPMK +K+GIG+ +V +T        GE++YAD +G+++S + L +
Sbjct:    6 TPDLCDAYPELV-----QVVEPMFSNFGGRDSFGGEIVTIKCFEDNSLVKEQADQPGAGKVLVVDGGGSLRRALLGDMIAEKAAKNGWEGLVIYGCVRDVDVLAQTDLGVQALAPHPMKTDKRGIGDLNVVVTFASVTFRPGEYVYADNNGVIVSPSPLKM 161          
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_AZOSE (Regulator of ribonuclease activity A OS=Azoarcus sp. (strain EbN1) GN=rraA PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.268e-37
Identity = 75/159 (47.17%), Postives = 104/159 (65.41%), Query Frame = -1
Query:  137 TAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAEL 613
            TA++CDAN        ++ + P+F+ YG R  F G I TLKVFEDN L+R  LE  G G+VLVVDGGGS+RCA++G    +    N WAG++V GCIRD   I   ++GV AL SHP+K+ KKG G+  + +T GG   + G ++YAD DG+++S + L
Sbjct:    5 TADLCDAN-----ESRVKIVSPMFRSYGGRGAFCGRITTLKVFEDNSLVRTALEGPGQGKVLVVDGGGSMRCALVGDQLALLGVKNQWAGVIVYGCIRDSKAIGTMELGVFALGSHPLKSIKKGAGDVDIAVTFGGVTFTPGHFIYADEDGVVVSESSL 158          
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_LARHH (Regulator of ribonuclease activity A OS=Laribacter hongkongensis (strain HLHK9) GN=rraA PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.402e-36
Identity = 78/155 (50.32%), Postives = 99/155 (63.87%), Query Frame = -1
Query:  149 TAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILIS 613
            TA++CD       S  L+ L P +  +G    F+G I TLKVFEDN  +RE L E G GRVLVVDGGGS RCA++G      A  NGWAGIVV GCIRD   +    +GVRALA+HP+K+ K G+GE+ + +T  G     G+WLYAD DG++ S
Sbjct:    5 TADLCDE-----FSDRLQILAPGYASFGGHARFAGRIATLKVFEDNSRVREMLSEPGEGRVLVVDGGGSRRCALVGDQLGALAVRNGWAGIVVYGCIRDSVALGLLPLGVRALATHPLKSVKNGVGERELAVTFDGATFRPGDWLYADEDGVITS 154          
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA2_VIBVY (Regulator of ribonuclease activity A protein 2 OS=Vibrio vulnificus (strain YJ016) GN=rraA2 PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 6.960e-36
Identity = 77/160 (48.12%), Postives = 106/160 (66.25%), Query Frame = -1
Query:  134 TAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELS 613
            T+ +CD     I   ++  ++P+F  +G R  F+G I T+K FEDN LIRE LE+ G GRVL+VDGGGSLR A+L G     A+ N W GIVV GC+R+VDE+   +IG++ALAS P+ A  +G+GE  VP+  GG      ++LYADT GI++S+  LS
Sbjct:    5 TSALCD-----IYMDQVDVVEPMFSNFGGRASFAGQITTVKCFEDNALIRETLEQDGVGRVLLVDGGGSLRRALLDGELAAIAEENEWEGIVVYGCVREVDELEDMNIGIQALASIPVSAAMQGVGEVDVPVNFGGVTFLPEDYLYADTTGIILSQEPLS 159          
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_RHOFD (Regulator of ribonuclease activity A OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=rraA PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.187e-35
Identity = 75/167 (44.91%), Postives = 107/167 (64.07%), Query Frame = -1
Query:  137 TAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGN--------GRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAEL 613
            T ++CDA+    VSG  R L P+F+ +G  + F GP+VT+K FEDN  ++  +E  G         G+VLVVDGGGSLR A+LGGN    A  NGWAG+V++GC+RDV E+    +G+RALAS P+   K+G G+  + + I G  +  G+WLYAD DG++++   L
Sbjct:    7 TCDLCDAHKN-DVSGAFRVLPPVFRDFGGVRQFCGPVVTVKCFEDNSSVKAAVESVGYQETPAGRVGKVLVVDGGGSLRRALLGGNLGAAAARNGWAGVVIDGCVRDVSELAAVGLGIRALASMPLPTEKRGEGQSDLALQIQGVWVRPGDWLYADEDGMVLAAGRL 172          
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA2_VIBVU (Regulator of ribonuclease activity A protein 2 OS=Vibrio vulnificus GN=rraA2 PE=3 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 1.187e-35
Identity = 77/160 (48.12%), Postives = 106/160 (66.25%), Query Frame = -1
Query:  134 TAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELS 613
            T+ +CD     I   ++  ++P+F  +G R  F+G I T+K FEDN LIRE LE+ G GRVL+VDGGGSLR A+L G     A+ N W GIVV GC+R+VDE+   +IG++ALAS P+ A  +G+GE  VP+  GG      ++LYADT GI++S+  LS
Sbjct:    5 TSALCD-----IYMDQVDVVEPMFSNFGGRASFAGQITTVKCFEDNALIRETLEQDGVGRVLLVDGGGSLRRALLDGELAAIAEENEWEGIVVYGCVREVDELEDMNIGIQALASIPVGAAMQGVGEVDVPVNFGGVTFLPEDYLYADTTGIILSQEPLS 159          
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_THISH (Regulator of ribonuclease activity A OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=rraA PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.005e-34
Identity = 76/158 (48.10%), Postives = 103/158 (65.19%), Query Frame = -1
Query:  152 LVTTAEVCDANPQLIVSGELRAL-QPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILI 622
            L  TA++CD +      GE   + +  F  YG    FSG IVT++ FEDNVL+R+ LE +G G+VLVVDGGGSLRCA+ G      A +NGWAG++VNGCIRDV  I    IGV+AL +HP K+ K+G G  +VP++ G      GE ++AD DG+++
Sbjct:    8 LTATADLCDQH------GEAAGVCETHFGDYGGITAFSGEIVTVRCFEDNVLVRQTLEAEGRGKVLVVDGGGSLRCALFGDMLAQTALDNGWAGVIVNGCIRDVAVIVTLPIGVKALGTHPRKSEKRGEGAVNVPVSFGAITFRPGERVFADEDGVVV 159          
The following BLAST results are available for this feature:
BLAST of CN188238 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 185
Match NameE-valueIdentityDescription
RRAA_PSEPG5.150e-3948.45Regulator of ribonuclease activity A OS=Pseudomona... [more]
RRAA_PSEU58.784e-3946.58Regulator of ribonuclease activity A OS=Pseudomona... [more]
RRAA_HAHCH1.498e-3845.96Regulator of ribonuclease activity A OS=Hahella ch... [more]
RRAA_PSEFL9.712e-3845.96Regulator of ribonuclease activity A OS=Pseudomona... [more]
RRAA_AZOSE1.268e-3747.17Regulator of ribonuclease activity A OS=Azoarcus s... [more]
RRAA_LARHH1.402e-3650.32Regulator of ribonuclease activity A OS=Laribacter... [more]
RRAA2_VIBVY6.960e-3648.13Regulator of ribonuclease activity A protein 2 OS=... [more]
RRAA_RHOFD1.187e-3544.91Regulator of ribonuclease activity A OS=Rhodoferax... [more]
RRAA2_VIBVU1.187e-3548.13Regulator of ribonuclease activity A protein 2 OS=... [more]
RRAA_THISH1.005e-3448.10Regulator of ribonuclease activity A OS=Thioalkali... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005L13_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005L13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188238 ID=CN188238; Name=CN188238; organism=Citrus sinensis; type=EST; length=781bp
TTTTTTTTTTTTTTTTCAGTTCATCTAAAATTAATAAATGGGCTCGTTAA
AACAAGTTAGGCATAATAGTAGGGGAATACATTCCCGGAAAAGCACCTGC
AGTTTTGGTATTTGCAAAGGAAAGGACTCATACAGATAACTCTGCCCGAG
AAATCAAGATGCCATCTGTGTCAGCATAAAGCCATTCGCCATCACTGATT
CTTGTCCCACCAATAGTTATTGGCACATGTTTCTCCCCAATCCCCTTCTT
ATTGGCTTTCATGGGATGAGAAGCCAGTGCTCTCACACCAATATCACACC
CATTAATTTCATCAACATCCCTAATACACCCATTCACAACTATTCCAGCC
CATCCGTTATTCTGGGCTTGTACGACAGGGTTACCCCCCAATATAGCGCA
CCGCAAACTCCCACCCCCATCTACAACAAGAACTCTTCCATTACCCTTCT
CCTCAAGAAACTCACGAATCAAAACATTGTCTTCAAATACCTTGAGGGTG
ACTATTGGTCCAGAGAATACTTGGCGCCGACCATATATCTGAAAAATTGG
CTGGAGAGCACGTAGCTCGCCACTCACAATCAGCTGTGGGTTTGCATCAC
ATACTTCAGCAGTCGTAACTAATGCCATTTATTCTAAGCACCTCAAACAA
AGCTTACTGAGATTTGAGACAAAAGAATTAAAATTGAATAATAGTTTAAT
TTACAATATTCACTTTTAATCAATGAGGAATACAACAACAATCAGTTATT
TACAAAATTAAATAATACAATGGAATCAACC
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