CN188238
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_PSEPG (Regulator of ribonuclease activity A OS=Pseudomonas putida (strain GB-1) GN=rraA PE=3 SV=1) HSP 1 Score: 161.384 bits (407), Expect = 5.150e-39 Identity = 78/161 (48.45%), Postives = 110/161 (68.32%), Query Frame = -1 Query: 131 TAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 613 T ++CDA P L+ + L+P+F +G R F G IVT+K FEDN L++E +E G G+VLVVDGGGSLR A+LG +A NGW G+V+ GC+RDVD + D+GV+ALASHPMK +K+GIG+ +V + G GE++YAD +G+L+S + L + Sbjct: 6 TPDLCDAYPDLV-----QVLEPMFSNFGGRDSFGGQIVTIKCFEDNSLVKEQVELDGKGKVLVVDGGGSLRRALLGDMLAEKAAKNGWEGLVIYGCVRDVDVLIQTDVGVQALASHPMKTDKRGIGDLNVVVAFAGVTFRPGEYVYADNNGVLVSPSPLEM 161
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_PSEU5 (Regulator of ribonuclease activity A OS=Pseudomonas stutzeri (strain A1501) GN=rraA PE=3 SV=1) HSP 1 Score: 160.614 bits (405), Expect = 8.784e-39 Identity = 75/161 (46.58%), Postives = 112/161 (69.57%), Query Frame = -1 Query: 131 TAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 613 T ++CDA P L+ + ++P+F +G R F G IVT+K FEDN L+++ ++ G G+V+VVDGGGSLR A+LG +A NGW G+++ GC+RDVD + ++GV+ALASHPMK +K+GIG+ +VP+T G GE++YAD +GI++S LS+ Sbjct: 5 TPDLCDAYPDLV-----QVVEPLFSNFGGRDSFGGEIVTIKCFEDNSLVKDQVDVDGTGKVMVVDGGGSLRRALLGDMLAEKAARNGWEGLIIYGCVRDVDVLAQTELGVQALASHPMKTDKRGIGDLNVPVTFCGVTFRPGEYVYADNNGIIVSPEPLSM 160
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_HAHCH (Regulator of ribonuclease activity A OS=Hahella chejuensis (strain KCTC 2396) GN=rraA PE=3 SV=1) HSP 1 Score: 159.844 bits (403), Expect = 1.498e-38 Identity = 74/161 (45.96%), Postives = 111/161 (68.94%), Query Frame = -1 Query: 131 TAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 613 T ++CDA PQL+ ++P+FQ +G + F G IVT+K FEDN ++++ +++ G+G+V+VVDGGGS R A+LG +A NGW GI++ GCIRDVD I D+GV+AL +HPMK +K+GIG+ + IT GG G ++YAD +G+++S LS+ Sbjct: 5 TPDLCDAYPQLV-----SVVEPMFQNFGAKSSFGGEIVTVKCFEDNSVVKQQVDQPGHGKVMVVDGGGSKRAALLGDMLAEKAAANGWEGIIIYGCIRDVDVIRQTDLGVQALGTHPMKTDKRGIGDLNADITFGGVTFKPGHYVYADNNGVIVSPEPLSM 160
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_PSEFL (Regulator of ribonuclease activity A OS=Pseudomonas fluorescens GN=rraA PE=3 SV=1) HSP 1 Score: 157.147 bits (396), Expect = 9.712e-38 Identity = 74/161 (45.96%), Postives = 110/161 (68.32%), Query Frame = -1 Query: 131 TAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 613 T ++CDA P+L+ + ++P+F +G R F G IVT+K FEDN L++E ++ G G+VLVVDGGGSLR A+LG +A NGW G+V+ GC+RDVD + D+GV+ALA HPMK +K+GIG+ +V +T GE++YAD +G+++S + L + Sbjct: 6 TPDLCDAYPELV-----QVVEPMFSNFGGRDSFGGEIVTIKCFEDNSLVKEQADQPGAGKVLVVDGGGSLRRALLGDMIAEKAAKNGWEGLVIYGCVRDVDVLAQTDLGVQALAPHPMKTDKRGIGDLNVVVTFASVTFRPGEYVYADNNGVIVSPSPLKM 161
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_AZOSE (Regulator of ribonuclease activity A OS=Azoarcus sp. (strain EbN1) GN=rraA PE=3 SV=1) HSP 1 Score: 156.762 bits (395), Expect = 1.268e-37 Identity = 75/159 (47.17%), Postives = 104/159 (65.41%), Query Frame = -1 Query: 137 TAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAEL 613 TA++CDAN ++ + P+F+ YG R F G I TLKVFEDN L+R LE G G+VLVVDGGGS+RCA++G + N WAG++V GCIRD I ++GV AL SHP+K+ KKG G+ + +T GG + G ++YAD DG+++S + L Sbjct: 5 TADLCDAN-----ESRVKIVSPMFRSYGGRGAFCGRITTLKVFEDNSLVRTALEGPGQGKVLVVDGGGSMRCALVGDQLALLGVKNQWAGVIVYGCIRDSKAIGTMELGVFALGSHPLKSIKKGAGDVDIAVTFGGVTFTPGHFIYADEDGVVVSESSL 158
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_LARHH (Regulator of ribonuclease activity A OS=Laribacter hongkongensis (strain HLHK9) GN=rraA PE=3 SV=1) HSP 1 Score: 153.295 bits (386), Expect = 1.402e-36 Identity = 78/155 (50.32%), Postives = 99/155 (63.87%), Query Frame = -1 Query: 149 TAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILIS 613 TA++CD S L+ L P + +G F+G I TLKVFEDN +RE L E G GRVLVVDGGGS RCA++G A NGWAGIVV GCIRD + +GVRALA+HP+K+ K G+GE+ + +T G G+WLYAD DG++ S Sbjct: 5 TADLCDE-----FSDRLQILAPGYASFGGHARFAGRIATLKVFEDNSRVREMLSEPGEGRVLVVDGGGSRRCALVGDQLGALAVRNGWAGIVVYGCIRDSVALGLLPLGVRALATHPLKSVKNGVGERELAVTFDGATFRPGDWLYADEDGVITS 154
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA2_VIBVY (Regulator of ribonuclease activity A protein 2 OS=Vibrio vulnificus (strain YJ016) GN=rraA2 PE=3 SV=1) HSP 1 Score: 150.984 bits (380), Expect = 6.960e-36 Identity = 77/160 (48.12%), Postives = 106/160 (66.25%), Query Frame = -1 Query: 134 TAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELS 613 T+ +CD I ++ ++P+F +G R F+G I T+K FEDN LIRE LE+ G GRVL+VDGGGSLR A+L G A+ N W GIVV GC+R+VDE+ +IG++ALAS P+ A +G+GE VP+ GG ++LYADT GI++S+ LS Sbjct: 5 TSALCD-----IYMDQVDVVEPMFSNFGGRASFAGQITTVKCFEDNALIRETLEQDGVGRVLLVDGGGSLRRALLDGELAAIAEENEWEGIVVYGCVREVDELEDMNIGIQALASIPVSAAMQGVGEVDVPVNFGGVTFLPEDYLYADTTGIILSQEPLS 159
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_RHOFD (Regulator of ribonuclease activity A OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=rraA PE=3 SV=1) HSP 1 Score: 150.214 bits (378), Expect = 1.187e-35 Identity = 75/167 (44.91%), Postives = 107/167 (64.07%), Query Frame = -1 Query: 137 TAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGN--------GRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAEL 613 T ++CDA+ VSG R L P+F+ +G + F GP+VT+K FEDN ++ +E G G+VLVVDGGGSLR A+LGGN A NGWAG+V++GC+RDV E+ +G+RALAS P+ K+G G+ + + I G + G+WLYAD DG++++ L Sbjct: 7 TCDLCDAHKN-DVSGAFRVLPPVFRDFGGVRQFCGPVVTVKCFEDNSSVKAAVESVGYQETPAGRVGKVLVVDGGGSLRRALLGGNLGAAAARNGWAGVVIDGCVRDVSELAAVGLGIRALASMPLPTEKRGEGQSDLALQIQGVWVRPGDWLYADEDGMVLAAGRL 172
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA2_VIBVU (Regulator of ribonuclease activity A protein 2 OS=Vibrio vulnificus GN=rraA2 PE=3 SV=2) HSP 1 Score: 150.214 bits (378), Expect = 1.187e-35 Identity = 77/160 (48.12%), Postives = 106/160 (66.25%), Query Frame = -1 Query: 134 TAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELS 613 T+ +CD I ++ ++P+F +G R F+G I T+K FEDN LIRE LE+ G GRVL+VDGGGSLR A+L G A+ N W GIVV GC+R+VDE+ +IG++ALAS P+ A +G+GE VP+ GG ++LYADT GI++S+ LS Sbjct: 5 TSALCD-----IYMDQVDVVEPMFSNFGGRASFAGQITTVKCFEDNALIRETLEQDGVGRVLLVDGGGSLRRALLDGELAAIAEENEWEGIVVYGCVREVDELEDMNIGIQALASIPVGAAMQGVGEVDVPVNFGGVTFLPEDYLYADTTGIILSQEPLS 159
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_THISH (Regulator of ribonuclease activity A OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=rraA PE=3 SV=1) HSP 1 Score: 147.132 bits (370), Expect = 1.005e-34 Identity = 76/158 (48.10%), Postives = 103/158 (65.19%), Query Frame = -1 Query: 152 LVTTAEVCDANPQLIVSGELRAL-QPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILI 622 L TA++CD + GE + + F YG FSG IVT++ FEDNVL+R+ LE +G G+VLVVDGGGSLRCA+ G A +NGWAG++VNGCIRDV I IGV+AL +HP K+ K+G G +VP++ G GE ++AD DG+++ Sbjct: 8 LTATADLCDQH------GEAAGVCETHFGDYGGITAFSGEIVTVRCFEDNVLVRQTLEAEGRGKVLVVDGGGSLRCALFGDMLAQTALDNGWAGVIVNGCIRDVAVIVTLPIGVKALGTHPRKSEKRGEGAVNVPVSFGAITFRPGERVFADEDGVVV 159 The following BLAST results are available for this feature:
BLAST of CN188238 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 185
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188238 ID=CN188238; Name=CN188238; organism=Citrus sinensis; type=EST; length=781bpback to top |