CN188238
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_ACIAD (Regulator of ribonuclease activity A OS=Acinetobacter sp. (strain ADP1) GN=rraA PE=3 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 6.097e-32 Identity = 65/136 (47.79%), Postives = 92/136 (67.65%), Query Frame = -1 Query: 137 FQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAEL 544 F+ YG R++FSG IVT+K FEDN ++E L G G+VLVVDGG S+RCA++G A W G+V+ GCIRDVD + D+G+ ALA+ P K+N++GIGE V + GG G ++YAD +GI++S+ +L Sbjct: 33 FKSYGARKIFSGQIVTVKCFEDNSRVKELLATDGTGKVLVVDGGASMRCALMGDMIAESAVKYHWDGVVIYGCIRDVDALAELDLGIHALAAIPQKSNRQGIGEVGVNLYFGGVTFQAGCYIYADNNGIIVSKQKL 168
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_ENTS8 (Regulator of ribonuclease activity A OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=rraA PE=3 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 7.963e-32 Identity = 70/161 (43.48%), Postives = 99/161 (61.49%), Query Frame = -1 Query: 131 TAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 613 T+E+CD I E+ ++P+F +G R F G I+T+K FEDN L+ E LEE G GRVL+VDGGGS+R A++ A N W G+VV G +R VD++ D+G++ALA+ P+ A +GIGE V + GG G+ LYAD GI++S L + Sbjct: 5 TSELCD-----IYQEEVNVVEPLFSNFGGRSSFGGQIITVKCFEDNGLLYELLEENGRGRVLLVDGGGSVRRALIDAELARLAVQNEWEGLVVYGAVRQVDDLAELDVGIQALAAIPVGAAGEGIGESDVRVNFGGVTFFSGDHLYADNTGIILSEDPLDI 160
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_MARMS (Regulator of ribonuclease activity A OS=Marinomonas sp. (strain MWYL1) GN=rraA PE=3 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 1.040e-31 Identity = 64/159 (40.25%), Postives = 101/159 (63.52%), Query Frame = -1 Query: 131 EVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 607 ++CD P+ +L+ +PIF YG+R F G +VT+ FEDN +RE + E G G+V+V+DGGGS R A+LG +A +NGW G V+NG IRD+ + +IG+ AL +HPM K+G+G+ + G I+ G+++Y D +GI++S+ L++ Sbjct: 7 DLCDLYPE-----KLQIAEPIFTSYGKRSHFYGEVVTVSCFEDNSRVRELVAENGKGKVMVIDGGGSKRRALLGDMLAEKAVDNGWEGFVINGAIRDIAAQSQLNIGIHALCAHPMPTEKRGLGDLGKTLRFAGMTIAQGDYIYCDLNGIVVSKQPLAL 160
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_XANC5 (Regulator of ribonuclease activity A OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=rraA PE=3 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 1.358e-31 Identity = 64/162 (39.51%), Postives = 102/162 (62.96%), Query Frame = -1 Query: 131 TTAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 616 TT ++CD P + ++ +P+F+ +G R F+GP+VT++ FEDN +RE G+GRVLVVDG GSL+ A+LG A NGWAG++++GC+RDV+ + +GV ALA+ P + ++ +G+ V + G G WLYAD +G+L++ L++ Sbjct: 4 TTPDLCDRYPDVTIA------EPLFRHFGGRTAFAGPMVTVRCFEDNSRVRELSAMPGDGRVLVVDGQGSLKHALLGDQIAANAVANGWAGVLIHGCVRDVEILATLPLGVLALAACPRRTERRDLGDVDVAVNFAGVPFVPGHWLYADANGVLVAPQPLAL 159
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_HAES2 (Regulator of ribonuclease activity A OS=Haemophilus somnus (strain 2336) GN=rraA PE=3 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 1.358e-31 Identity = 66/163 (40.49%), Postives = 103/163 (63.19%), Query Frame = -1 Query: 131 VTTAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 619 + TAE+CD I ++ ++PIF +G + F G I T+K FE+N LI E LEE G GRVL++DGGG++R A++ N A +NGW GI+V G IR + ++ +IG++ALA P+ ++++ IGE VP+ GG +++YAD GI++S+ L + Sbjct: 3 IDTAELCD-----IYLDQIDVVEPIFSSFGGKSTFFGKITTIKCFENNGLISEILEENGEGRVLLIDGGGAVRRALIDANLAQLAADNGWEGIIVYGAIRQLQQLENINIGIQALAPIPVGSDEQSIGETDVPVNFGGVTFFPDDYIYADLTGIILSQEPLDL 160
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_EDWI9 (Regulator of ribonuclease activity A OS=Edwardsiella ictaluri (strain 93-146) GN=rraA PE=3 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 1.358e-31 Identity = 68/161 (42.24%), Postives = 99/161 (61.49%), Query Frame = -1 Query: 131 TAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 613 T+E+CD I E+ ++P+F +G R F G I+T+K FEDN L+ + LEE G GRVLV+DGGGS+R A++ A N W GIVV G +R VD++ DIG++A+A+ P+ A+ GIGE + + GG G+ LYAD GI+++ L + Sbjct: 5 TSELCD-----IYHEEVNVVEPLFSNFGGRSSFGGQIITVKCFEDNGLLYDLLEENGRGRVLVIDGGGSVRRALVNAELGRLAVQNEWEGIVVYGAVRQVDDLEELDIGIQAMAAIPVGADSDGIGESDIRVNFGGVTFFSGDHLYADNTGIILAEEPLDI 160
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_XANOP (Regulator of ribonuclease activity A OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=rraA PE=3 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 1.774e-31 Identity = 66/162 (40.74%), Postives = 102/162 (62.96%), Query Frame = -1 Query: 131 TTAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 616 TT ++CD P++ ++ +P F+ +G R VF GP+VT++ FEDN +RE G+ RVLVVDG GSL+ A+LG A NGWAG++++G +RDV+ + +GV ALA+ P + ++ +G+ VP++ G G WLYAD +G+L+S LS+ Sbjct: 4 TTPDLCDRYPEVTIA------EPPFRHFGGRTVFCGPMVTVRCFEDNSRMRELAATPGDARVLVVDGQGSLKHALLGDQIAANAVANGWAGVLIHGGVRDVEMLASLPLGVLALAACPRRTERRDLGDVDVPVSFAGVPFVPGHWLYADANGVLVSPQPLSL 159
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_XANOM (Regulator of ribonuclease activity A OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=rraA PE=3 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 1.774e-31 Identity = 66/162 (40.74%), Postives = 102/162 (62.96%), Query Frame = -1 Query: 131 TTAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 616 TT ++CD P++ ++ +P F+ +G R VF GP+VT++ FEDN +RE G+ RVLVVDG GSL+ A+LG A NGWAG++++G +RDV+ + +GV ALA+ P + ++ +G+ VP++ G G WLYAD +G+L+S LS+ Sbjct: 4 TTPDLCDRYPEVTIA------EPPFRHFGGRTVFCGPMVTVRCFEDNSRMRELAATPGDARVLVVDGQGSLKHALLGDQIAANAVANGWAGVLIHGGVRDVEMLASLPLGVLALAACPRRTERRDLGDVDVPVSFAGVPFVPGHWLYADANGVLVSPQPLSL 159
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_HAES1 (Regulator of ribonuclease activity A OS=Haemophilus somnus (strain 129Pt) GN=rraA PE=3 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 1.774e-31 Identity = 66/163 (40.49%), Postives = 103/163 (63.19%), Query Frame = -1 Query: 131 VTTAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 619 + TAE+CD I ++ ++PIF +G + F G I T+K FE+N LI E LEE G GRVL++DGGG++R A++ N A +NGW GI+V G IR + ++ +IG++ALA P+ ++++ IGE VP+ GG +++YAD GI++S+ L + Sbjct: 3 IDTAELCD-----IYLDQIDVVEPIFSSFGGKSTFFGKITTIKCFENNGLISEILEENGEGRVLLIDGGGAVRRALIDANLAQLAADNGWEGIIVYGAIRQLQQLENINIGIQALAPIPVGSDEQSIGETDVPVNFGGVTFFPDDYVYADLTGIILSQEPLDL 160
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_SERP5 (Regulator of ribonuclease activity A OS=Serratia proteamaculans (strain 568) GN=rraA PE=3 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 2.317e-31 Identity = 69/161 (42.86%), Postives = 97/161 (60.25%), Query Frame = -1 Query: 131 TAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 613 T+E+CD I E+ ++P+F +G R F G I T+K FEDN L+ E LEE G GRVLV+DGGGS+R A++ A N W GIVV G +R VD++ DIG++A+A+ P+ A + IGE + + GG G+ LYAD GI++S L + Sbjct: 5 TSELCD-----IYHEEVNVVEPLFSNFGGRTSFGGQITTVKCFEDNGLLFELLEENGRGRVLVIDGGGSVRRALINAELARLATQNEWEGIVVYGAVRQVDDLEEMDIGIQAMAAIPVGAASESIGESDIRVNFGGVTFFSGDHLYADNTGIILSEDPLDI 160 The following BLAST results are available for this feature:
BLAST of CN188238 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 185
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188238 ID=CN188238; Name=CN188238; organism=Citrus sinensis; type=EST; length=781bpback to top |