CN188238

Overview
NameCN188238
Unique NameCN188238
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length781
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2648 contig Csv1_Contig2648:1..781. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_ACIAD (Regulator of ribonuclease activity A OS=Acinetobacter sp. (strain ADP1) GN=rraA PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.097e-32
Identity = 65/136 (47.79%), Postives = 92/136 (67.65%), Query Frame = -1
Query:  137 FQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAEL 544
            F+ YG R++FSG IVT+K FEDN  ++E L   G G+VLVVDGG S+RCA++G      A    W G+V+ GCIRDVD +   D+G+ ALA+ P K+N++GIGE  V +  GG     G ++YAD +GI++S+ +L
Sbjct:   33 FKSYGARKIFSGQIVTVKCFEDNSRVKELLATDGTGKVLVVDGGASMRCALMGDMIAESAVKYHWDGVVIYGCIRDVDALAELDLGIHALAAIPQKSNRQGIGEVGVNLYFGGVTFQAGCYIYADNNGIIVSKQKL 168          
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_ENTS8 (Regulator of ribonuclease activity A OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=rraA PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.963e-32
Identity = 70/161 (43.48%), Postives = 99/161 (61.49%), Query Frame = -1
Query:  131 TAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 613
            T+E+CD     I   E+  ++P+F  +G R  F G I+T+K FEDN L+ E LEE G GRVL+VDGGGS+R A++       A  N W G+VV G +R VD++   D+G++ALA+ P+ A  +GIGE  V +  GG     G+ LYAD  GI++S   L +
Sbjct:    5 TSELCD-----IYQEEVNVVEPLFSNFGGRSSFGGQIITVKCFEDNGLLYELLEENGRGRVLLVDGGGSVRRALIDAELARLAVQNEWEGLVVYGAVRQVDDLAELDVGIQALAAIPVGAAGEGIGESDVRVNFGGVTFFSGDHLYADNTGIILSEDPLDI 160          
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_MARMS (Regulator of ribonuclease activity A OS=Marinomonas sp. (strain MWYL1) GN=rraA PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.040e-31
Identity = 64/159 (40.25%), Postives = 101/159 (63.52%), Query Frame = -1
Query:  131 EVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 607
            ++CD  P+     +L+  +PIF  YG+R  F G +VT+  FEDN  +RE + E G G+V+V+DGGGS R A+LG     +A +NGW G V+NG IRD+   +  +IG+ AL +HPM   K+G+G+    +   G  I+ G+++Y D +GI++S+  L++
Sbjct:    7 DLCDLYPE-----KLQIAEPIFTSYGKRSHFYGEVVTVSCFEDNSRVRELVAENGKGKVMVIDGGGSKRRALLGDMLAEKAVDNGWEGFVINGAIRDIAAQSQLNIGIHALCAHPMPTEKRGLGDLGKTLRFAGMTIAQGDYIYCDLNGIVVSKQPLAL 160          
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_XANC5 (Regulator of ribonuclease activity A OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=rraA PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.358e-31
Identity = 64/162 (39.51%), Postives = 102/162 (62.96%), Query Frame = -1
Query:  131 TTAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 616
            TT ++CD  P + ++      +P+F+ +G R  F+GP+VT++ FEDN  +RE     G+GRVLVVDG GSL+ A+LG      A  NGWAG++++GC+RDV+ +    +GV ALA+ P +  ++ +G+  V +   G     G WLYAD +G+L++   L++
Sbjct:    4 TTPDLCDRYPDVTIA------EPLFRHFGGRTAFAGPMVTVRCFEDNSRVRELSAMPGDGRVLVVDGQGSLKHALLGDQIAANAVANGWAGVLIHGCVRDVEILATLPLGVLALAACPRRTERRDLGDVDVAVNFAGVPFVPGHWLYADANGVLVAPQPLAL 159          
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_HAES2 (Regulator of ribonuclease activity A OS=Haemophilus somnus (strain 2336) GN=rraA PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.358e-31
Identity = 66/163 (40.49%), Postives = 103/163 (63.19%), Query Frame = -1
Query:  131 VTTAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 619
            + TAE+CD     I   ++  ++PIF  +G +  F G I T+K FE+N LI E LEE G GRVL++DGGG++R A++  N    A +NGW GI+V G IR + ++   +IG++ALA  P+ ++++ IGE  VP+  GG      +++YAD  GI++S+  L +
Sbjct:    3 IDTAELCD-----IYLDQIDVVEPIFSSFGGKSTFFGKITTIKCFENNGLISEILEENGEGRVLLIDGGGAVRRALIDANLAQLAADNGWEGIIVYGAIRQLQQLENINIGIQALAPIPVGSDEQSIGETDVPVNFGGVTFFPDDYIYADLTGIILSQEPLDL 160          
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_EDWI9 (Regulator of ribonuclease activity A OS=Edwardsiella ictaluri (strain 93-146) GN=rraA PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.358e-31
Identity = 68/161 (42.24%), Postives = 99/161 (61.49%), Query Frame = -1
Query:  131 TAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 613
            T+E+CD     I   E+  ++P+F  +G R  F G I+T+K FEDN L+ + LEE G GRVLV+DGGGS+R A++       A  N W GIVV G +R VD++   DIG++A+A+ P+ A+  GIGE  + +  GG     G+ LYAD  GI+++   L +
Sbjct:    5 TSELCD-----IYHEEVNVVEPLFSNFGGRSSFGGQIITVKCFEDNGLLYDLLEENGRGRVLVIDGGGSVRRALVNAELGRLAVQNEWEGIVVYGAVRQVDDLEELDIGIQAMAAIPVGADSDGIGESDIRVNFGGVTFFSGDHLYADNTGIILAEEPLDI 160          
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_XANOP (Regulator of ribonuclease activity A OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=rraA PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.774e-31
Identity = 66/162 (40.74%), Postives = 102/162 (62.96%), Query Frame = -1
Query:  131 TTAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 616
            TT ++CD  P++ ++      +P F+ +G R VF GP+VT++ FEDN  +RE     G+ RVLVVDG GSL+ A+LG      A  NGWAG++++G +RDV+ +    +GV ALA+ P +  ++ +G+  VP++  G     G WLYAD +G+L+S   LS+
Sbjct:    4 TTPDLCDRYPEVTIA------EPPFRHFGGRTVFCGPMVTVRCFEDNSRMRELAATPGDARVLVVDGQGSLKHALLGDQIAANAVANGWAGVLIHGGVRDVEMLASLPLGVLALAACPRRTERRDLGDVDVPVSFAGVPFVPGHWLYADANGVLVSPQPLSL 159          
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_XANOM (Regulator of ribonuclease activity A OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=rraA PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.774e-31
Identity = 66/162 (40.74%), Postives = 102/162 (62.96%), Query Frame = -1
Query:  131 TTAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 616
            TT ++CD  P++ ++      +P F+ +G R VF GP+VT++ FEDN  +RE     G+ RVLVVDG GSL+ A+LG      A  NGWAG++++G +RDV+ +    +GV ALA+ P +  ++ +G+  VP++  G     G WLYAD +G+L+S   LS+
Sbjct:    4 TTPDLCDRYPEVTIA------EPPFRHFGGRTVFCGPMVTVRCFEDNSRMRELAATPGDARVLVVDGQGSLKHALLGDQIAANAVANGWAGVLIHGGVRDVEMLASLPLGVLALAACPRRTERRDLGDVDVPVSFAGVPFVPGHWLYADANGVLVSPQPLSL 159          
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_HAES1 (Regulator of ribonuclease activity A OS=Haemophilus somnus (strain 129Pt) GN=rraA PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.774e-31
Identity = 66/163 (40.49%), Postives = 103/163 (63.19%), Query Frame = -1
Query:  131 VTTAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 619
            + TAE+CD     I   ++  ++PIF  +G +  F G I T+K FE+N LI E LEE G GRVL++DGGG++R A++  N    A +NGW GI+V G IR + ++   +IG++ALA  P+ ++++ IGE  VP+  GG      +++YAD  GI++S+  L +
Sbjct:    3 IDTAELCD-----IYLDQIDVVEPIFSSFGGKSTFFGKITTIKCFENNGLISEILEENGEGRVLLIDGGGAVRRALIDANLAQLAADNGWEGIIVYGAIRQLQQLENINIGIQALAPIPVGSDEQSIGETDVPVNFGGVTFFPDDYVYADLTGIILSQEPLDL 160          
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_SERP5 (Regulator of ribonuclease activity A OS=Serratia proteamaculans (strain 568) GN=rraA PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.317e-31
Identity = 69/161 (42.86%), Postives = 97/161 (60.25%), Query Frame = -1
Query:  131 TAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 613
            T+E+CD     I   E+  ++P+F  +G R  F G I T+K FEDN L+ E LEE G GRVLV+DGGGS+R A++       A  N W GIVV G +R VD++   DIG++A+A+ P+ A  + IGE  + +  GG     G+ LYAD  GI++S   L +
Sbjct:    5 TSELCD-----IYHEEVNVVEPLFSNFGGRTSFGGQITTVKCFEDNGLLFELLEENGRGRVLVIDGGGSVRRALINAELARLATQNEWEGIVVYGAVRQVDDLEEMDIGIQAMAAIPVGAASESIGESDIRVNFGGVTFFSGDHLYADNTGIILSEDPLDI 160          
The following BLAST results are available for this feature:
BLAST of CN188238 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 185
Match NameE-valueIdentityDescription
RRAA_ACIAD6.097e-3247.79Regulator of ribonuclease activity A OS=Acinetobac... [more]
RRAA_ENTS87.963e-3243.48Regulator of ribonuclease activity A OS=Enterobact... [more]
RRAA_MARMS1.040e-3140.25Regulator of ribonuclease activity A OS=Marinomona... [more]
RRAA_XANC51.358e-3139.51Regulator of ribonuclease activity A OS=Xanthomona... [more]
RRAA_HAES21.358e-3140.49Regulator of ribonuclease activity A OS=Haemophilu... [more]
RRAA_EDWI91.358e-3142.24Regulator of ribonuclease activity A OS=Edwardsiel... [more]
RRAA_XANOP1.774e-3140.74Regulator of ribonuclease activity A OS=Xanthomona... [more]
RRAA_XANOM1.774e-3140.74Regulator of ribonuclease activity A OS=Xanthomona... [more]
RRAA_HAES11.774e-3140.49Regulator of ribonuclease activity A OS=Haemophilu... [more]
RRAA_SERP52.317e-3142.86Regulator of ribonuclease activity A OS=Serratia p... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005L13_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005L13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188238 ID=CN188238; Name=CN188238; organism=Citrus sinensis; type=EST; length=781bp
TTTTTTTTTTTTTTTTCAGTTCATCTAAAATTAATAAATGGGCTCGTTAA
AACAAGTTAGGCATAATAGTAGGGGAATACATTCCCGGAAAAGCACCTGC
AGTTTTGGTATTTGCAAAGGAAAGGACTCATACAGATAACTCTGCCCGAG
AAATCAAGATGCCATCTGTGTCAGCATAAAGCCATTCGCCATCACTGATT
CTTGTCCCACCAATAGTTATTGGCACATGTTTCTCCCCAATCCCCTTCTT
ATTGGCTTTCATGGGATGAGAAGCCAGTGCTCTCACACCAATATCACACC
CATTAATTTCATCAACATCCCTAATACACCCATTCACAACTATTCCAGCC
CATCCGTTATTCTGGGCTTGTACGACAGGGTTACCCCCCAATATAGCGCA
CCGCAAACTCCCACCCCCATCTACAACAAGAACTCTTCCATTACCCTTCT
CCTCAAGAAACTCACGAATCAAAACATTGTCTTCAAATACCTTGAGGGTG
ACTATTGGTCCAGAGAATACTTGGCGCCGACCATATATCTGAAAAATTGG
CTGGAGAGCACGTAGCTCGCCACTCACAATCAGCTGTGGGTTTGCATCAC
ATACTTCAGCAGTCGTAACTAATGCCATTTATTCTAAGCACCTCAAACAA
AGCTTACTGAGATTTGAGACAAAAGAATTAAAATTGAATAATAGTTTAAT
TTACAATATTCACTTTTAATCAATGAGGAATACAACAACAATCAGTTATT
TACAAAATTAAATAATACAATGGAATCAACC
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