CN188238

Overview
NameCN188238
Unique NameCN188238
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length781
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2648 contig Csv1_Contig2648:1..781. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_ECOBW (Regulator of ribonuclease activity A OS=Escherichia coli (strain K12 / BW2952) GN=rraA PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.741e-31
Identity = 67/161 (41.61%), Postives = 99/161 (61.49%), Query Frame = -1 
Query:  131 TAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 613
            T+E+CD     I   ++  ++P+F  +G R  F G I+T+K FEDN L+ + LE+ G GRVLVVDGGGS+R A++       A  N W G+V+ G +R VD++   DIG++A+A+ P+ A  +GIGE  V +  GG     G+ LYAD  GI++S   L +
Sbjct:    5 TSELCD-----IYQEDVNVVEPLFSNFGGRASFGGQIITVKCFEDNGLLYDLLEQNGRGRVLVVDGGGSVRRALVDAELARLAVQNEWEGLVIYGAVRQVDDLEELDIGIQAMAAIPVGAAGEGIGESDVRVNFGGVTFFSGDHLYADNTGIILSEDPLDI 160
[Close]
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_ECO8A (Regulator of ribonuclease activity A OS=Escherichia coli O8 (strain IAI1) GN=rraA PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.741e-31
Identity = 67/161 (41.61%), Postives = 99/161 (61.49%), Query Frame = -1 
Query:  131 TAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 613
            T+E+CD     I   ++  ++P+F  +G R  F G I+T+K FEDN L+ + LE+ G GRVLVVDGGGS+R A++       A  N W G+V+ G +R VD++   DIG++A+A+ P+ A  +GIGE  V +  GG     G+ LYAD  GI++S   L +
Sbjct:    5 TSELCD-----IYQEDVNVVEPLFSNFGGRASFGGQIITVKCFEDNGLLYDLLEQNGRGRVLVVDGGGSVRRALVDAELARLAVQNEWEGLVIYGAVRQVDDLEELDIGIQAMAAIPVGAAGEGIGESDVRVNFGGVTFFSGDHLYADNTGIILSEDPLDI 160
[Close]
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_ECO81 (Regulator of ribonuclease activity A OS=Escherichia coli O81 (strain ED1a) GN=rraA PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.741e-31
Identity = 67/161 (41.61%), Postives = 99/161 (61.49%), Query Frame = -1 
Query:  131 TAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 613
            T+E+CD     I   ++  ++P+F  +G R  F G I+T+K FEDN L+ + LE+ G GRVLVVDGGGS+R A++       A  N W G+V+ G +R VD++   DIG++A+A+ P+ A  +GIGE  V +  GG     G+ LYAD  GI++S   L +
Sbjct:    5 TSELCD-----IYQEDVNVVEPLFSNFGGRASFGGQIITVKCFEDNGLLYDLLEQNGRGRVLVVDGGGSVRRALVDAELARLAVQNEWEGLVIYGAVRQVDDLEELDIGIQAMAAIPVGAAGEGIGESDVRVNFGGVTFFSGDHLYADNTGIILSEDPLDI 160
[Close]
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_ECO7I (Regulator of ribonuclease activity A OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=rraA PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.741e-31
Identity = 67/161 (41.61%), Postives = 99/161 (61.49%), Query Frame = -1 
Query:  131 TAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 613
            T+E+CD     I   ++  ++P+F  +G R  F G I+T+K FEDN L+ + LE+ G GRVLVVDGGGS+R A++       A  N W G+V+ G +R VD++   DIG++A+A+ P+ A  +GIGE  V +  GG     G+ LYAD  GI++S   L +
Sbjct:    5 TSELCD-----IYQEDVNVVEPLFSNFGGRASFGGQIITVKCFEDNGLLYDLLEQNGRGRVLVVDGGGSVRRALVDAELARLAVQNEWEGLVIYGAVRQVDDLEELDIGIQAMAAIPVGAAGEGIGESDVRVNFGGVTFFSGDHLYADNTGIILSEDPLDI 160
[Close]
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_ECO5E (Regulator of ribonuclease activity A OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=rraA PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.741e-31
Identity = 67/161 (41.61%), Postives = 99/161 (61.49%), Query Frame = -1 
Query:  131 TAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 613
            T+E+CD     I   ++  ++P+F  +G R  F G I+T+K FEDN L+ + LE+ G GRVLVVDGGGS+R A++       A  N W G+V+ G +R VD++   DIG++A+A+ P+ A  +GIGE  V +  GG     G+ LYAD  GI++S   L +
Sbjct:    5 TSELCD-----IYQEDVNVVEPLFSNFGGRASFGGQIITVKCFEDNGLLYDLLEQNGRGRVLVVDGGGSVRRALVDAELARLAVQNEWEGLVIYGAVRQVDDLEELDIGIQAMAAIPVGAAGEGIGESDVRVNFGGVTFFSGDHLYADNTGIILSEDPLDI 160
[Close]
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_ECO57 (Regulator of ribonuclease activity A OS=Escherichia coli O157:H7 GN=rraA PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.741e-31
Identity = 67/161 (41.61%), Postives = 99/161 (61.49%), Query Frame = -1 
Query:  131 TAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 613
            T+E+CD     I   ++  ++P+F  +G R  F G I+T+K FEDN L+ + LE+ G GRVLVVDGGGS+R A++       A  N W G+V+ G +R VD++   DIG++A+A+ P+ A  +GIGE  V +  GG     G+ LYAD  GI++S   L +
Sbjct:    5 TSELCD-----IYQEDVNVVEPLFSNFGGRASFGGQIITVKCFEDNGLLYDLLEQNGRGRVLVVDGGGSVRRALVDAELARLAVQNEWEGLVIYGAVRQVDDLEELDIGIQAMAAIPVGAAGEGIGESDVRVNFGGVTFFSGDHLYADNTGIILSEDPLDI 160
[Close]
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_ECO55 (Regulator of ribonuclease activity A OS=Escherichia coli (strain 55989 / EAEC) GN=rraA PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.741e-31
Identity = 67/161 (41.61%), Postives = 99/161 (61.49%), Query Frame = -1 
Query:  131 TAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 613
            T+E+CD     I   ++  ++P+F  +G R  F G I+T+K FEDN L+ + LE+ G GRVLVVDGGGS+R A++       A  N W G+V+ G +R VD++   DIG++A+A+ P+ A  +GIGE  V +  GG     G+ LYAD  GI++S   L +
Sbjct:    5 TSELCD-----IYQEDVNVVEPLFSNFGGRASFGGQIITVKCFEDNGLLYDLLEQNGRGRVLVVDGGGSVRRALVDAELARLAVQNEWEGLVIYGAVRQVDDLEELDIGIQAMAAIPVGAAGEGIGESDVRVNFGGVTFFSGDHLYADNTGIILSEDPLDI 160
[Close]
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_ECO45 (Regulator of ribonuclease activity A OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=rraA PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.741e-31
Identity = 67/161 (41.61%), Postives = 99/161 (61.49%), Query Frame = -1 
Query:  131 TAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 613
            T+E+CD     I   ++  ++P+F  +G R  F G I+T+K FEDN L+ + LE+ G GRVLVVDGGGS+R A++       A  N W G+V+ G +R VD++   DIG++A+A+ P+ A  +GIGE  V +  GG     G+ LYAD  GI++S   L +
Sbjct:    5 TSELCD-----IYQEDVNVVEPLFSNFGGRASFGGQIITVKCFEDNGLLYDLLEQNGRGRVLVVDGGGSVRRALVDAELARLAVQNEWEGLVIYGAVRQVDDLEELDIGIQAMAAIPVGAAGEGIGESDVRVNFGGVTFFSGDHLYADNTGIILSEDPLDI 160
[Close]
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_ECO27 (Regulator of ribonuclease activity A OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=rraA PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.741e-31
Identity = 67/161 (41.61%), Postives = 99/161 (61.49%), Query Frame = -1 
Query:  131 TAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 613
            T+E+CD     I   ++  ++P+F  +G R  F G I+T+K FEDN L+ + LE+ G GRVLVVDGGGS+R A++       A  N W G+V+ G +R VD++   DIG++A+A+ P+ A  +GIGE  V +  GG     G+ LYAD  GI++S   L +
Sbjct:    5 TSELCD-----IYQEDVNVVEPLFSNFGGRASFGGQIITVKCFEDNGLLYDLLEQNGRGRVLVVDGGGSVRRALVDAELARLAVQNEWEGLVIYGAVRQVDDLEELDIGIQAMAAIPVGAAGEGIGESDVRVNFGGVTFFSGDHLYADNTGIILSEDPLDI 160
[Close]
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_ECO24 (Regulator of ribonuclease activity A OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=rraA PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.741e-31
Identity = 67/161 (41.61%), Postives = 99/161 (61.49%), Query Frame = -1 
Query:  131 TAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 613
            T+E+CD     I   ++  ++P+F  +G R  F G I+T+K FEDN L+ + LE+ G GRVLVVDGGGS+R A++       A  N W G+V+ G +R VD++   DIG++A+A+ P+ A  +GIGE  V +  GG     G+ LYAD  GI++S   L +
Sbjct:    5 TSELCD-----IYQEDVNVVEPLFSNFGGRASFGGQIITVKCFEDNGLLYDLLEQNGRGRVLVVDGGGSVRRALVDAELARLAVQNEWEGLVIYGAVRQVDDLEELDIGIQAMAAIPVGAAGEGIGESDVRVNFGGVTFFSGDHLYADNTGIILSEDPLDI 160
The following BLAST results are available for this feature:
BLAST of CN188238 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 185
Match NameE-valueIdentityDescription
RRAA_ECOBW6.741e-3141.61Regulator of ribonuclease activity A OS=Escherichi... [more]
RRAA_ECO8A6.741e-3141.61Regulator of ribonuclease activity A OS=Escherichi... [more]
RRAA_ECO816.741e-3141.61Regulator of ribonuclease activity A OS=Escherichi... [more]
RRAA_ECO7I6.741e-3141.61Regulator of ribonuclease activity A OS=Escherichi... [more]
RRAA_ECO5E6.741e-3141.61Regulator of ribonuclease activity A OS=Escherichi... [more]
RRAA_ECO576.741e-3141.61Regulator of ribonuclease activity A OS=Escherichi... [more]
RRAA_ECO556.741e-3141.61Regulator of ribonuclease activity A OS=Escherichi... [more]
RRAA_ECO456.741e-3141.61Regulator of ribonuclease activity A OS=Escherichi... [more]
RRAA_ECO276.741e-3141.61Regulator of ribonuclease activity A OS=Escherichi... [more]
RRAA_ECO246.741e-3141.61Regulator of ribonuclease activity A OS=Escherichi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005L13_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005L13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188238 ID=CN188238; Name=CN188238; organism=Citrus sinensis; type=EST; length=781bp
TTTTTTTTTTTTTTTTCAGTTCATCTAAAATTAATAAATGGGCTCGTTAA
AACAAGTTAGGCATAATAGTAGGGGAATACATTCCCGGAAAAGCACCTGC
AGTTTTGGTATTTGCAAAGGAAAGGACTCATACAGATAACTCTGCCCGAG
AAATCAAGATGCCATCTGTGTCAGCATAAAGCCATTCGCCATCACTGATT
CTTGTCCCACCAATAGTTATTGGCACATGTTTCTCCCCAATCCCCTTCTT
ATTGGCTTTCATGGGATGAGAAGCCAGTGCTCTCACACCAATATCACACC
CATTAATTTCATCAACATCCCTAATACACCCATTCACAACTATTCCAGCC
CATCCGTTATTCTGGGCTTGTACGACAGGGTTACCCCCCAATATAGCGCA
CCGCAAACTCCCACCCCCATCTACAACAAGAACTCTTCCATTACCCTTCT
CCTCAAGAAACTCACGAATCAAAACATTGTCTTCAAATACCTTGAGGGTG
ACTATTGGTCCAGAGAATACTTGGCGCCGACCATATATCTGAAAAATTGG
CTGGAGAGCACGTAGCTCGCCACTCACAATCAGCTGTGGGTTTGCATCAC
ATACTTCAGCAGTCGTAACTAATGCCATTTATTCTAAGCACCTCAAACAA
AGCTTACTGAGATTTGAGACAAAAGAATTAAAATTGAATAATAGTTTAAT
TTACAATATTCACTTTTAATCAATGAGGAATACAACAACAATCAGTTATT
TACAAAATTAAATAATACAATGGAATCAACC
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