CN188232

Overview
NameCN188232
Unique NameCN188232
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188232 vs. ExPASy Swiss-Prot
Match: UBC3_ARATH (Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis thaliana GN=UBC3 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.721e-27
Identity = 63/141 (44.68%), Postives = 88/141 (62.41%), Query Frame = 2
Query:  152 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLN-NKEDYRKMV 571
            TT   +RL  +   L      +G+S  P+  +I  W   I G + T ++G ++KL+LHF  DYP KPP V+F +  FHPN+   G+ICLDILQ++WS  YD   +L SIQSLL +PNP+SP N+ AA L + NK +Y + V
Sbjct:    2 TTPAKKRLMWDFKRLQKDP-PVGISGAPQDNNIMHWNALIFGPEDTPWDGGTFKLTLHFTEDYPNKPPIVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAVLTSIQSLLCDPNPDSPANAEAARLFSENKREYNRKV 141          
BLAST of CN188232 vs. ExPASy Swiss-Prot
Match: UBC2_MEDSA (Ubiquitin-conjugating enzyme E2 2 OS=Medicago sativa GN=UBC2 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.943e-26
Identity = 63/143 (44.06%), Postives = 87/143 (60.84%), Query Frame = 2
Query:  152 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLN-NKEDYRKMVQK 577
            +T   +RL ++   L       G+S  P+  +I  W   I G   T ++G ++KLSL F  DYP KPP V+F +  FHPN+   G+ICLDILQ++WS  YD   IL SIQSLL +PNP SP NS AA + + NK +Y + V++
Sbjct:    2 STPARKRLMRDFKRLQHDP-PAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 143          
BLAST of CN188232 vs. ExPASy Swiss-Prot
Match: UBC29_ARATH (Ubiquitin carrier protein E2 29 OS=Arabidopsis thaliana GN=UBC29 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.314e-26
Identity = 59/118 (50.00%), Postives = 76/118 (64.41%), Query Frame = 2
Query:  164 TQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL 517
            T+R+ KEL  L      +  SA P GE +F W  TI G   + Y G  + +++HFP DYPFKPP+V F T  FHPN++  GNICLDIL+D+WS A     +LLSI SLL +PNP+ PL
Sbjct:    3 TRRILKELKELQRDP-PVSCSAGPTGEDMFHWQATIMGPNESPYSGGVFLVNIHFPPDYPFKPPKVVFRTKVFHPNINSNGNICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPL 119          
BLAST of CN188232 vs. ExPASy Swiss-Prot
Match: UBC2_ARATH (Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis thaliana GN=UBC2 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.328e-26
Identity = 62/143 (43.36%), Postives = 87/143 (60.84%), Query Frame = 2
Query:  152 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLN-NKEDYRKMVQK 577
            +T   +RL ++   L       G+S  P+  +I  W   I G   T ++G ++KLSL F  DYP KPP V+F +  FHPN+   G+ICLDILQ++WS  YD   IL SIQSLL +PNP SP NS AA + + +K +Y + V++
Sbjct:    2 STPARKRLMRDFKRLQQDP-PAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSESKREYNRRVRE 143          
BLAST of CN188232 vs. ExPASy Swiss-Prot
Match: UBC1_ARATH (Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis thaliana GN=UBC1 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.383e-26
Identity = 62/142 (43.66%), Postives = 86/142 (60.56%), Query Frame = 2
Query:  152 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLN-NKEDYRKMVQ 574
            +T   +RL ++   L       G+S  P+  +I  W   I G   T ++G ++KLSL F  DYP KPP V+F +  FHPN+   G+ICLDILQ++WS  YD   IL SIQSLL +PNP SP NS AA + + +K +Y + V+
Sbjct:    2 STPARKRLMRDFKRLQQDP-PAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVR 142          
BLAST of CN188232 vs. ExPASy Swiss-Prot
Match: UBC2_WHEAT (Ubiquitin-conjugating enzyme E2 2 OS=Triticum aestivum GN=UBC2 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.642e-26
Identity = 62/143 (43.36%), Postives = 86/143 (60.14%), Query Frame = 2
Query:  152 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLN-NKEDYRKMVQK 577
            +T   +RL ++   L       G+S  P   +I  W   I G   T ++G ++KL+L F  DYP KPP V+F +  FHPN+   G+ICLDILQ++WS  YD   IL SIQSLL +PNP SP NS AA + + NK +Y + V++
Sbjct:    2 STPARKRLMRDFKRLQQDP-PAGISGAPHDNNITLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSENKREYNRKVRE 143          
BLAST of CN188232 vs. ExPASy Swiss-Prot
Match: UB2E3_MOUSE (Ubiquitin-conjugating enzyme E2 E3 OS=Mus musculus GN=Ube2e3 PE=1 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 9.642e-26
Identity = 66/172 (38.37%), Postives = 98/172 (56.98%), Query Frame = 2
Query:   71 PNPTVENLRATAAASSKQ--PVSSPNTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL-NSYAAALLNNKEDYRKMVQK 577
            P P  +  R  +A   K+   +SS  T   ++  +R+QKEL  + +       SA P+G++I+ W  TI G  G++YEG  + L + F  DYPFKPP+V F T  +H N++  G ICLDIL+D WS A     +LLSI SLL + NP  PL  S A   L N+ ++ ++ ++
Sbjct:   30 PEPEEQEERKPSATQQKKNTKLSSKTTAKLSTSAKRIQKELAEITLDPPP-NCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQ 200          
BLAST of CN188232 vs. ExPASy Swiss-Prot
Match: UB2E3_HUMAN (Ubiquitin-conjugating enzyme E2 E3 OS=Homo sapiens GN=UBE2E3 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.642e-26
Identity = 66/172 (38.37%), Postives = 98/172 (56.98%), Query Frame = 2
Query:   71 PNPTVENLRATAAASSKQ--PVSSPNTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL-NSYAAALLNNKEDYRKMVQK 577
            P P  +  R  +A   K+   +SS  T   ++  +R+QKEL  + +       SA P+G++I+ W  TI G  G++YEG  + L + F  DYPFKPP+V F T  +H N++  G ICLDIL+D WS A     +LLSI SLL + NP  PL  S A   L N+ ++ ++ ++
Sbjct:   30 PEPEEQEERKPSATQQKKNTKLSSKTTAKLSTSAKRIQKELAEITLDPPP-NCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQ 200          
BLAST of CN188232 vs. ExPASy Swiss-Prot
Match: UB2E3_BOVIN (Ubiquitin-conjugating enzyme E2 E3 OS=Bos taurus GN=UBE2E3 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.642e-26
Identity = 66/172 (38.37%), Postives = 98/172 (56.98%), Query Frame = 2
Query:   71 PNPTVENLRATAAASSKQ--PVSSPNTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL-NSYAAALLNNKEDYRKMVQK 577
            P P  +  R  +A   K+   +SS  T   ++  +R+QKEL  + +       SA P+G++I+ W  TI G  G++YEG  + L + F  DYPFKPP+V F T  +H N++  G ICLDIL+D WS A     +LLSI SLL + NP  PL  S A   L N+ ++ ++ ++
Sbjct:   30 PEPEEQEERKPSATQQKKNTKLSSKTTAKLSTSAKRIQKELAEITLDPPP-NCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQ 200          
BLAST of CN188232 vs. ExPASy Swiss-Prot
Match: UBCD6_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=UbcD6 PE=2 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.148e-25
Identity = 63/142 (44.37%), Postives = 82/142 (57.75%), Query Frame = 2
Query:  152 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQ 574
            +T   +RL ++   L       GVS  P   +I  W   I G   T +E  ++KL++ F  +YP KPP V+F +  FHPNV   G ICLDILQ++WS  YD   IL SIQSLL +PNP SP NS AA L   N+ +Y K V+
Sbjct:    2 STPARRRLMRDFKRLQ-EDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKVFHPNVYADGGICLDILQNRWSPTYDVSAILTSIQSLLSDPNPNSPANSTAAQLYKENRREYEKRVK 142          
The following BLAST results are available for this feature:
BLAST of CN188232 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
UBC3_ARATH8.721e-2744.68Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis t... [more]
UBC2_MEDSA1.943e-2644.06Ubiquitin-conjugating enzyme E2 2 OS=Medicago sati... [more]
UBC29_ARATH3.314e-2650.00Ubiquitin carrier protein E2 29 OS=Arabidopsis tha... [more]
UBC2_ARATH4.328e-2643.36Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis t... [more]
UBC1_ARATH7.383e-2643.66Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis t... [more]
UBC2_WHEAT9.642e-2643.36Ubiquitin-conjugating enzyme E2 2 OS=Triticum aest... [more]
UB2E3_MOUSE9.642e-2638.37Ubiquitin-conjugating enzyme E2 E3 OS=Mus musculus... [more]
UB2E3_HUMAN9.642e-2638.37Ubiquitin-conjugating enzyme E2 E3 OS=Homo sapiens... [more]
UB2E3_BOVIN9.642e-2638.37Ubiquitin-conjugating enzyme E2 E3 OS=Bos taurus G... [more]
UBCD6_DROME2.148e-2544.37Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005L08_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005L08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188232 ID=CN188232; Name=CN188232; organism=Citrus sinensis; type=EST; length=718bp
AGTCTTGATTATCGTCATTGATCATCGGCCGTTGATCAGTGATTCTTCTT
TGCTAATCATGGAGGTGCGGCCAAATCCGACGGTTGAAAATTTACGTGCA
ACTGCCGCTGCTTCGTCGAAGCAGCCTGTCTCTTCTCCTAACACCGTCGA
TACAACATCCGTTACTCAAAGGCTTCAGAAGGAATTGATGTCTCTTATGA
TGAGTGGAGGTGATCTTGGGGTCTCGGCCTTTCCTGAAGGCGAGAGCATT
TTCACTTGGATTGGCACAATTGAGGGTGGAAAGGGAACTATGTATGAGGG
TTTATCATACAAACTTTCTTTGCATTTTCCTCTGGATTATCCTTTCAAGC
CACCCCAAGTCAAGTTTGAAACTATGTGCTTCCATCCAAATGTTGATCAG
TATGGCAACATATGCCTAGACATCCTTCAGGACAAGTGGTCTTCAGCTTA
TGATTGCAGAACGATTCTTTTGTCCATTCAAAGTTTATTGGGAGAGCCTA
ATCCAGAGAGCCCTCTCAACAGCTATGCTGCAGCTCTGTTGAACAATAAG
GAAGATTACAGAAAAATGGTCCAGAAACAGTACTTTGCTGGAGAATTTGA
GAGCTAATTTGAACAGCAAAACAGATACAAAATCGGATGTTAGGCTTCCA
CATTATTTCTCTGTAAAGCTCAAGGGGAAGGGCTTGTTTCAGTTTGGAAC
TTGTTTCAATGAAAACTG
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