CN188232

Overview
NameCN188232
Unique NameCN188232
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188232 vs. ExPASy Swiss-Prot
Match: UB2D2_HUMAN (Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens GN=UBE2D2 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.102e-24
Identity = 58/138 (42.03%), Postives = 84/138 (60.87%), Query Frame = 2
Query:  167 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 577
            +R+ KEL  L         SA P G+ +F W  TI G   + Y+G  + L++HFP DYPFKPP+V F T  +HPN++  G+ICLDIL+ +WS A     +LLSI SLL +PNP+ PL    A +   ++E Y ++ ++
Sbjct:    4 KRIHKELNDLARDP-PAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 140          
BLAST of CN188232 vs. ExPASy Swiss-Prot
Match: UB2D2_BOVIN (Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus GN=UBE2D2 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.102e-24
Identity = 58/138 (42.03%), Postives = 84/138 (60.87%), Query Frame = 2
Query:  167 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 577
            +R+ KEL  L         SA P G+ +F W  TI G   + Y+G  + L++HFP DYPFKPP+V F T  +HPN++  G+ICLDIL+ +WS A     +LLSI SLL +PNP+ PL    A +   ++E Y ++ ++
Sbjct:    4 KRIHKELNDLARDP-PAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 140          
BLAST of CN188232 vs. ExPASy Swiss-Prot
Match: UBC2_YEAST (Ubiquitin-conjugating enzyme E2 2 OS=Saccharomyces cerevisiae GN=RAD6 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.051e-24
Identity = 62/143 (43.36%), Postives = 83/143 (58.04%), Query Frame = 2
Query:  152 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 577
            +T   +RL ++    M      GVSA P  +++  W   I G   T YE  +++L L F  +YP KPP VKF +  FHPNV   G ICLDILQ++W+  YD  +IL SIQSL  +PNP SP N  AA L  ++K  Y K V++
Sbjct:    2 STPARRRLMRDFKR-MKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKE 143          
BLAST of CN188232 vs. ExPASy Swiss-Prot
Match: UBC2_ASHGO (Ubiquitin-conjugating enzyme E2 2 OS=Ashbya gossypii GN=UBC2 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.051e-24
Identity = 62/143 (43.36%), Postives = 83/143 (58.04%), Query Frame = 2
Query:  152 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 577
            +T   +RL ++    M      GVSA P  +++  W   I G   T YE  +++L L F  +YP KPP VKF +  FHPNV   G ICLDILQ++W+  YD  +IL SIQSL  +PNP SP N  AA L  ++K  Y K V++
Sbjct:    2 STPARRRLMRDFKR-MKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKE 143          
BLAST of CN188232 vs. ExPASy Swiss-Prot
Match: UBC4_SOLLC (Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.291e-24
Identity = 56/118 (47.46%), Postives = 74/118 (62.71%), Query Frame = 2
Query:  164 TQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL 517
            ++R+ KEL  L         SA P  E +F W  TI G   + Y G  + +S+HFP DYPFKPP+V F T  FHPN++  G+ICLDIL+++WS A     +LLSI SLL +PNP+ PL
Sbjct:    3 SKRILKELKDLQKDP-PTSCSAGPVAEDMFHWQATIMGPTDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPL 119          
BLAST of CN188232 vs. ExPASy Swiss-Prot
Match: UBC2_KLULA (Ubiquitin-conjugating enzyme E2 2 OS=Kluyveromyces lactis GN=UBC2 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.291e-24
Identity = 62/143 (43.36%), Postives = 83/143 (58.04%), Query Frame = 2
Query:  152 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 577
            +T   +RL ++    M      GVSA P  +++  W   I G   T YE  +++L L F  +YP KPP VKF +  FHPNV   G ICLDILQ++W+  YD  +IL SIQSL  +PNP SP N  AA L  ++K  Y K V++
Sbjct:    2 STPARRRLMRDFKR-MKEDSPPGVSASPLPDNVMIWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFQDHKSQYVKRVKE 143          
BLAST of CN188232 vs. ExPASy Swiss-Prot
Match: UBC28_ARATH (Ubiquitin carrier protein E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.291e-24
Identity = 56/118 (47.46%), Postives = 74/118 (62.71%), Query Frame = 2
Query:  164 TQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL 517
            ++R+ KEL  L         SA P  E +F W  TI G   + Y G  + +++HFP DYPFKPP+V F T  FHPNV+  G+ICLDIL+++WS A     +LLSI SLL +PNP+ PL
Sbjct:    3 SKRILKELKDLQKDP-PTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNVNSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPL 119          
BLAST of CN188232 vs. ExPASy Swiss-Prot
Match: U2D2B_RAT (Ubiquitin-conjugating enzyme E2 D2B OS=Rattus norvegicus GN=Ube2d2b PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.291e-24
Identity = 57/130 (43.85%), Postives = 78/130 (60.00%), Query Frame = 2
Query:  167 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKED 556
            +R+ KEL  L         SA P GE +F W  TI G   + Y+G ++ L++ FP +YPFKPP+V+F T  +HPNV+  G+ICLDIL+ +WS A     +LLSI SLL +PNP+ PL    A +     D
Sbjct:    4 KRIHKELNDLAQDP-PAQCSAGPVGEDMFHWQATIMGPNDSPYQGGAFFLTIDFPTEYPFKPPKVEFTTRIYHPNVNSNGSICLDILRSQWSPALTISKVLLSISSLLCDPNPDDPLVPEIAQIYKTDRD 132          
BLAST of CN188232 vs. ExPASy Swiss-Prot
Match: U2D2B_MOUSE (Ubiquitin-conjugating enzyme E2 D2B OS=Mus musculus GN=Ube2d2b PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.291e-24
Identity = 57/130 (43.85%), Postives = 78/130 (60.00%), Query Frame = 2
Query:  167 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKED 556
            +R+ KEL  L         SA P GE +F W  TI G   + Y+G ++ L++ FP +YPFKPP+V+F T  +HPNV+  G+ICLDIL+ +WS A     +LLSI SLL +PNP+ PL    A +     D
Sbjct:    4 KRIHKELNDLAQDP-PAQCSAGPVGEDMFHWQATIMGPNDSPYQGGAFFLTIDFPTEYPFKPPKVEFTTRIYHPNVNSNGSICLDILRSQWSPALTISKVLLSISSLLCDPNPDDPLVPEIAQIYKTDRD 132          
BLAST of CN188232 vs. ExPASy Swiss-Prot
Match: UBC9_ARATH (SUMO-conjugating enzyme UBC9 OS=Arabidopsis thaliana GN=UBC9 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.910e-24
Identity = 55/118 (46.61%), Postives = 74/118 (62.71%), Query Frame = 2
Query:  164 TQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL 517
            ++R+ KEL  L         SA P  E +F W  TI G   + Y G  + +++HFP DYPFKPP+V F T  FHPN++  G+ICLDIL+++WS A     +LLSI SLL +PNP+ PL
Sbjct:    3 SKRILKELKDLQKDP-PTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPL 119          
The following BLAST results are available for this feature:
BLAST of CN188232 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
UB2D2_HUMAN3.102e-2442.03Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens... [more]
UB2D2_BOVIN3.102e-2442.03Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus G... [more]
UBC2_YEAST4.051e-2443.36Ubiquitin-conjugating enzyme E2 2 OS=Saccharomyces... [more]
UBC2_ASHGO4.051e-2443.36Ubiquitin-conjugating enzyme E2 2 OS=Ashbya gossyp... [more]
UBC4_SOLLC5.291e-2447.46Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum ... [more]
UBC2_KLULA5.291e-2443.36Ubiquitin-conjugating enzyme E2 2 OS=Kluyveromyces... [more]
UBC28_ARATH5.291e-2447.46Ubiquitin carrier protein E2 28 OS=Arabidopsis tha... [more]
U2D2B_RAT5.291e-2443.85Ubiquitin-conjugating enzyme E2 D2B OS=Rattus norv... [more]
U2D2B_MOUSE5.291e-2443.85Ubiquitin-conjugating enzyme E2 D2B OS=Mus musculu... [more]
UBC9_ARATH6.910e-2446.61SUMO-conjugating enzyme UBC9 OS=Arabidopsis thalia... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0005L08_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005L08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188232 ID=CN188232; Name=CN188232; organism=Citrus sinensis; type=EST; length=718bp
AGTCTTGATTATCGTCATTGATCATCGGCCGTTGATCAGTGATTCTTCTT
TGCTAATCATGGAGGTGCGGCCAAATCCGACGGTTGAAAATTTACGTGCA
ACTGCCGCTGCTTCGTCGAAGCAGCCTGTCTCTTCTCCTAACACCGTCGA
TACAACATCCGTTACTCAAAGGCTTCAGAAGGAATTGATGTCTCTTATGA
TGAGTGGAGGTGATCTTGGGGTCTCGGCCTTTCCTGAAGGCGAGAGCATT
TTCACTTGGATTGGCACAATTGAGGGTGGAAAGGGAACTATGTATGAGGG
TTTATCATACAAACTTTCTTTGCATTTTCCTCTGGATTATCCTTTCAAGC
CACCCCAAGTCAAGTTTGAAACTATGTGCTTCCATCCAAATGTTGATCAG
TATGGCAACATATGCCTAGACATCCTTCAGGACAAGTGGTCTTCAGCTTA
TGATTGCAGAACGATTCTTTTGTCCATTCAAAGTTTATTGGGAGAGCCTA
ATCCAGAGAGCCCTCTCAACAGCTATGCTGCAGCTCTGTTGAACAATAAG
GAAGATTACAGAAAAATGGTCCAGAAACAGTACTTTGCTGGAGAATTTGA
GAGCTAATTTGAACAGCAAAACAGATACAAAATCGGATGTTAGGCTTCCA
CATTATTTCTCTGTAAAGCTCAAGGGGAAGGGCTTGTTTCAGTTTGGAAC
TTGTTTCAATGAAAACTG
back to top