CK939505

Overview
NameCK939505
Unique NameCK939505
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939505 vs. ExPASy Swiss-Prot
Match: SYM1_NEUCR (Protein sym-1 OS=Neurospora crassa GN=sym-1 PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.041e-12
Identity = 52/172 (30.23%), Postives = 80/172 (46.51%), Query Frame = 1
Query:  190 LQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLT---GIXXXXXXXXXXXVLFGCAYLGPFGHFLHLILDK-IFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYG--VVVEGRPWRDVKTKIKKDYPTVQYTSWTFWPVVGWINHLYVPLQFRVIFHSLVAMCWGIFLN 687
            L  Y  QL   PL T+A+T  +L  + D+ AQ+L    G+           VL+G A  GP        L K +        T+  +V  +Q   +P       I+ G   V+EG    DVK K++K+Y     T+W  WP V  +N   VPL  RV+F +++++ W  +L+
Sbjct:    2 LSWYKAQLAARPLLTQAVTTSILFGVGDVAAQQLVDRRGLSNHDLTRTGRMVLYGGAVFGPAATTWFRFLQKRVVVPGSTNKTILARVAADQGLFAP---TFIGIFLGSMAVLEGT---DVKEKLQKNYWEALSTNWMVWPFVQMVNFKVVPLDHRVLFVNVISIGWNCYLS 167          
BLAST of CK939505 vs. ExPASy Swiss-Prot
Match: MPV17_BOVIN (Protein Mpv17 OS=Bos taurus GN=MPV17 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.319e-12
Identity = 45/172 (26.16%), Postives = 81/172 (47.09%), Query Frame = 1
Query:  199 YLIQLQQHPLRTKAITAGVLSAISDIVAQKLT---GIXXXXXXXXXXXVLFGCAYLGPFGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEGRPWRDVKTKIKKDYPTVQYTSWTFWPVVGWINHLYVPLQFRVIFHSLVAMCWGIFLNLRARSM 705
            Y   L  HP + + +TAG L  + D+++Q+L    G+              GC ++GP     + +LD++  G      + KK++L+Q   +P     F+   G +  G   +D   K+++D+P    T++  WP V   N   VPL +R+     VA+ W  +L+ +A  +
Sbjct:    7 YQRALTAHPWKVQVLTAGSLMGLGDVISQQLVERRGLQAHQAGRTLTMASLGCGFVGPVVGGWYRVLDRLIPGTTKVDAL-KKMLLDQGGFAPCFLGCFLPLVGTL-NGLSAQDNWAKLQRDFPDALITNYYLWPAVQLANFYLVPLHYRLAVVQCVAVIWNSYLSWKAHRL 176          
BLAST of CK939505 vs. ExPASy Swiss-Prot
Match: PX24B_DICDI (PXMP2/4 family protein 2 OS=Dictyostelium discoideum GN=DDB_G0278529 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.564e-11
Identity = 48/170 (28.24%), Postives = 80/170 (47.06%), Query Frame = 1
Query:  199 YLIQLQQHPLRTKAITAGVLSAISDIVAQKLT-------GIXXXXXXXXXXXVLFGCAYLGPFGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEGRPWRDVKTKIKKDYPTVQYTSWTFWPVVGWINHLYVPLQFRVIFHSLVAMCWGIFLN 687
            YL  L  HPL TK+++ G L    DI+AQ+L                        G  Y GP  H+ +  LD + KG+   S + KK++++QL  +P     FM     +      ++++   K+ +  V+  +W  WP    IN   VP   RV++ S++++ WG+FL+
Sbjct:    8 YLGLLDNHPLVTKSLSTGFLMGTGDILAQRLEHKFKDEKSQFKLDYKRVATMSTVGIFYSGPMLHYWYRSLDIMVKGE-GRSVIIKKMLIDQLLFAPVAIGGFMTVTNFINNKGELKNLENFTKELFYAVKI-NWLIWPAAQIINFSLVPPNLRVLYSSIISIFWGMFLS 175          
The following BLAST results are available for this feature:
BLAST of CK939505 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
SYM1_NEUCR1.041e-1230.23Protein sym-1 OS=Neurospora crassa GN=sym-1 PE=3 S... [more]
MPV17_BOVIN2.319e-1226.16Protein Mpv17 OS=Bos taurus GN=MPV17 PE=2 SV=1[more]
PX24B_DICDI2.564e-1128.24PXMP2/4 family protein 2 OS=Dictyostelium discoide... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004749_G05 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IF_G05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939505 ID=CK939505; Name=CK939505; organism=Citrus sinensis; type=EST; length=759bp
GGGGGACTTCCAGCTTTGCAAGCAGCACAAAGTACAAGTTAAAGCAAGTC
CCTTACCCTTATTATTATTATTATAATTATTCTCCCCATTTCCATTTCCA
TTTCCTTCTCCATCTTTAAAATTGCAAGAAGAAGAACAGAAGGAAGAAGA
AATTTTAGTGAGGAAATGGGATCAATTGCAAAGAAAGGTTTGCAACAGTA
CTTGATACAACTTCAGCAACACCCTTTGAGAACAAAGGCAATAACTGCGG
GAGTGTTGTCAGCAATCAGCGACATAGTTGCTCAGAAACTCACTGGCATT
CAGAAACTTCAGCTGAGGAGGCTACTTCTTAAAGTGCTTTTTGGATGTGC
TTATCTTGGACCGTTCGGACATTTCCTGCATTTAATCCTGGACAAAATTT
TCAAGGGGAAAAAAGATACCAGTACAGTTGCCAAGAAGGTGGTGTTGGAA
CAGTTGACATCTTCTCCTTGGAACAACTTGATGTTTATGATTTACTATGG
GGTTGTTGTTGAAGGAAGACCTTGGAGGGATGTGAAAACTAAAATCAAGA
AGGACTACCCGACAGTGCAGTATACATCATGGACGTTCTGGCCAGTTGTG
GGGTGGATAAATCATCTATATGTACCACTGCAGTTCCGTGTGATTTTCCA
CAGCTTAGTTGCAATGTGCTGGGGGATATTTCTGAATCTTCGGGCTAGGT
CAATGGCTTTGCCTAAAGCTAAGTGACTTGAAAATATAAATNNNCACGTC
AGTGTAGTA
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