CN188231
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBC20_ARATH (Ubiquitin carrier protein E2 20 OS=Arabidopsis thaliana GN=UBC20 PE=2 SV=1) HSP 1 Score: 224.557 bits (571), Expect = 4.494e-58 Identity = 111/160 (69.38%), Postives = 127/160 (79.38%), Query Frame = -2 Query: 154 AAASSKQPVSSPNTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQKQY 633 A+ SKQP + TVD+ SV +RLQ ELM LMM GG G+SAFPE ++IF W GTI G K T++EG Y+LSL F DYPFKPP+VKFET CFHPNVD YGNICLDILQDKWSSAYD RTILLSIQSLLGEPN SPLN+ AA L +N+E+YRKMV+K Y Sbjct: 17 ASNGSKQPAAPTKTVDSQSVLKRLQSELMGLMMGGGP-GISAFPEEDNIFCWKGTITGSKDTVFEGTEYRLSLSFSNDYPFKPPKVKFETCCFHPNVDVYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNTQAAQLWSNQEEYRKMVEKLY 175
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBC19_ARATH (Ubiquitin carrier protein E2 19 OS=Arabidopsis thaliana GN=UBC19 PE=1 SV=1) HSP 1 Score: 218.009 bits (554), Expect = 4.206e-56 Identity = 110/160 (68.75%), Postives = 124/160 (77.50%), Query Frame = -2 Query: 154 AAASSKQPVSSPNTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQKQY 633 AA SKQ TVD+ SV +RLQ ELM LMM G D G+SAFPE ++IF W GTI G K T++EG Y+LSL F DYPFK P+VKFET CFHPNVD YGNICLDILQDKWSSAYD RTILLSIQSLLGEPN SPLN+ AA L +N+E+YRKMV+K Y Sbjct: 18 AATGSKQSAPPTKTVDSHSVLKRLQSELMGLMM-GADPGISAFPEEDNIFCWKGTITGSKDTVFEGTEYRLSLTFSNDYPFKSPKVKFETCCFHPNVDLYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNNQAAQLWSNQEEYRKMVEKLY 176
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBE2C_DICDI (Probable ubiquitin-conjugating enzyme E2 C OS=Dictyostelium discoideum GN=ube2c PE=3 SV=1) HSP 1 Score: 204.142 bits (518), Expect = 6.285e-52 Identity = 93/142 (65.49%), Postives = 120/142 (84.51%), Query Frame = -2 Query: 154 SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQKQY 579 SV++RLQ ELM+LMM G G+SAFP+G++IF WIGTI+G K T+YE + +K+SL FP DYP+KPP VKFET CFHPNVD GNICLDIL+DKWS Y+ R++L+SIQSLLGEPN ESPLNSYAA+L +N+++Y+K++ K+Y Sbjct: 6 SVSKRLQSELMNLMM-GPSPGISAFPDGDNIFNWIGTIQGAKDTVYEQMEFKMSLKFPTDYPYKPPTVKFETQCFHPNVDNNGNICLDILKDKWSPVYNVRSLLISIQSLLGEPNNESPLNSYAASLWSNQDEYKKVLDKRY 146
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBE2C_XENLA (Ubiquitin-conjugating enzyme E2 C OS=Xenopus laevis GN=ube2c PE=1 SV=1) HSP 1 Score: 200.29 bits (508), Expect = 9.076e-51 Identity = 98/162 (60.49%), Postives = 122/162 (75.31%), Query Frame = -2 Query: 154 ATAAASSKQPVSSPNTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQKQY 639 A ++ +S++ S + SV +RLQ+ELM+LMMSG D G+SAFPE +++F WIGTI+G GT+YE L YKLSL FP YP+ P VKF T CFHPNVD +GNICLDIL+DKWS+ YD RTILLS+QSLLGEPN ESPLN YAA L N+ Y+K + +QY Sbjct: 10 AASSVASRKGQESGTSAARGSVGKRLQQELMTLMMSG-DKGISAFPESDNLFKWIGTIDGAVGTVYEDLRYKLSLEFPSGYPYNAPTVKFVTPCFHPNVDSHGNICLDILKDKWSALYDVRTILLSLQSLLGEPNNESPLNPYAAELWQNQTAYKKHLHEQY 170
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBE2C_SPISO (Ubiquitin-conjugating enzyme E2 C OS=Spisula solidissima GN=UBE2C PE=1 SV=1) HSP 1 Score: 189.504 bits (480), Expect = 1.602e-47 Identity = 86/162 (53.09%), Postives = 124/162 (76.54%), Query Frame = -2 Query: 154 ATAAASSKQPVSSPNTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQKQY 639 A ++P + + SV++RLQ+EL +L+MSG D G++AFP+G+++F W+ T++G K T+YE L YKL+L FP DYP+KPP VKF T C+HPNVDQ GNICLDIL++ W+++YD RTILLS+QSLLGEPN SPLN+ AA + +N+ +Y+K++ ++Y Sbjct: 10 ANQVRQKERPRDMTTSKERHSVSKRLQQELRTLLMSG-DPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMWSNQTEYKKVLHEKY 170
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBE2C_MACFA (Ubiquitin-conjugating enzyme E2 C OS=Macaca fascicularis GN=UBE2C PE=2 SV=1) HSP 1 Score: 188.734 bits (478), Expect = 2.733e-47 Identity = 92/162 (56.79%), Postives = 117/162 (72.22%), Query Frame = -2 Query: 154 ATAAASSKQPVSSPNTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQKQY 639 AT+ ++++ V +RLQ+ELM+LMMSG D G+SAFPE +++F W+GTI G GT+YE L YKLSL FP YP+ P VKF T C+HPNVD GNICLDIL+DKWS+ YD RTILLSIQSLLGEPN +SPLN++AA L N ++K +Q+ Y Sbjct: 10 ATSVTAARKGAEPSGGAARGPVGKRLQQELMTLMMSG-DKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKDKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKNPTAFKKYLQETY 170
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBE2C_HUMAN (Ubiquitin-conjugating enzyme E2 C OS=Homo sapiens GN=UBE2C PE=1 SV=1) HSP 1 Score: 188.734 bits (478), Expect = 2.733e-47 Identity = 92/162 (56.79%), Postives = 118/162 (72.84%), Query Frame = -2 Query: 154 ATAAASSKQPVSSPNTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQKQY 639 AT+ A++++ V +RLQ+ELM+LMMSG D G+SAFPE +++F W+GTI G GT+YE L YKLSL FP YP+ P VKF T C+HPNVD GNICLDIL++KWS+ YD RTILLSIQSLLGEPN +SPLN++AA L N ++K +Q+ Y Sbjct: 10 ATSVAAARKGAEPSGGAARGPVGKRLQQELMTLMMSG-DKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKNPTAFKKYLQETY 170
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBE2C_BOVIN (Ubiquitin-conjugating enzyme E2 C OS=Bos taurus GN=UBE2C PE=2 SV=1) HSP 1 Score: 188.348 bits (477), Expect = 3.569e-47 Identity = 92/162 (56.79%), Postives = 117/162 (72.22%), Query Frame = -2 Query: 154 ATAAASSKQPVSSPNTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQKQY 639 A + A++++ V +RLQ+ELM+LMMSG D G+SAFPE +++F W+GTI G GT+YE L YKLSL FP YP+ P VKF T C+HPNVD GNICLDIL+DKWS+ YD RTILLSIQSLLGEPN +SPLN++AA L N ++K +Q+ Y Sbjct: 10 AASVAAARKGAEPSGGAARGPVGKRLQQELMTLMMSG-DKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKDKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKNPTAFKKYLQETY 170
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBE2C_DROME (Ubiquitin-conjugating enzyme E2 C OS=Drosophila melanogaster GN=vih PE=1 SV=1) HSP 1 Score: 184.496 bits (467), Expect = 5.154e-46 Identity = 92/170 (54.12%), Postives = 118/170 (69.41%), Query Frame = -2 Query: 154 NPTVENLRATAAASSKQPVSSPNTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQKQY 663 N + E SK S D +V++RL KELM+LMM+ + G+SAFP+GE+IF W+GTI G + T+Y G +Y+LSL FP YP+ P VKF T CFHPNVD G ICLDIL+DKWS+ YD RTILLSIQSLLGEPN ESPLN+ AA + N++++Y+K + Y Sbjct: 4 NISPEQSGGAGGGGSKHSDDSMPVKDNHAVSKRLHKELMNLMMAN-ERGISAFPDGENIFKWVGTIAGPRNTVYSGQTYRLSLDFPNSYPYAAPVVKFLTSCFHPNVDLQGAICLDILKDKWSALYDVRTILLSIQSLLGEPNNESPLNAQAAMMWNDQKEYKKYLDAFY 172
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBE2C_MOUSE (Ubiquitin-conjugating enzyme E2 C OS=Mus musculus GN=Ube2c PE=2 SV=1) HSP 1 Score: 184.111 bits (466), Expect = 6.731e-46 Identity = 89/141 (63.12%), Postives = 108/141 (76.60%), Query Frame = -2 Query: 154 VTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQKQY 576 V +RLQ+ELM LM SG D G+SAFPE +++F W+GTI G GT+YE L YKLSL FP YP+ P VKF T C+HPNVD GNICLDIL+DKWS+ YD RTILLSIQSLLGEPN +SPLN++AA L N ++K +Q+ Y Sbjct: 31 VGKRLQQELMILMTSG-DKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKDKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKNPTAFKKYLQETY 170 The following BLAST results are available for this feature:
BLAST of CN188231 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 230
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188231 ID=CN188231; Name=CN188231; organism=Citrus sinensis; type=EST; length=736bpback to top |