CN188231

Overview
NameCN188231
Unique NameCN188231
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5994 contig Csv1_Contig5994:40..775. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBC11_SCHPO (Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosaccharomyces pombe GN=ubc11 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.606e-39
Identity = 83/159 (52.20%), Postives = 113/159 (71.07%), Query Frame = -2
Query:  154 SSKQPVSSPNTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGES-IFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKE-DYRKMVQKQY 624
            +SK   S+   VD  SVT+RL+ ELMSLMMS    G+SAFP+ +S +  W GTI G   T YEGL +K+S+ FP +YP+ PP + F +  +HPNVD  GNICLDIL+DKWS+ Y+ +TILLS+QSLLGEPN  SPLN+ AA L +    +Y++++ ++Y
Sbjct:   13 NSKNSSSAGMAVDGHSVTKRLRSELMSLMMSNTP-GISAFPDSDSNLLHWAGTITGPSDTYYEGLKFKISMSFPANYPYSPPTIIFTSPMWHPNVDMSGNICLDILKDKWSAVYNVQTILLSLQSLLGEPNNASPLNAQAAELWSKDPIEYKRLLMQRY 170          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBC11_YEAST (Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharomyces cerevisiae GN=UBC11 PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.407e-35
Identity = 78/143 (54.55%), Postives = 102/143 (71.33%), Query Frame = -2
Query:  154 VTQRLQKELMSLMMSGGDLGVSAFPEGESIFT-WIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLN-NKEDYRKMVQKQY 576
            VT+RLQ EL+ L+ S  +  +SAFP  ++  T W+G I G K T Y GL +K+SL FP +YPF PP +KF +  +HPNVD+ GNICLDIL++KWS+ Y+  TILLS+QSLLGEPN  SPLN+ AA L + + E+YRK V   Y
Sbjct:    9 VTKRLQNELLQLLSSTTE-SISAFPVDDNDLTYWVGYITGPKDTPYSGLKFKVSLKFPQNYPFHPPMIKFLSPMWHPNVDKSGNICLDILKEKWSAVYNVETILLSLQSLLGEPNNRSPLNAVAAELWDADMEEYRKKVLACY 150          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBC1_CAEEL (Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditis elegans GN=ubc-1 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.175e-28
Identity = 70/143 (48.95%), Postives = 87/143 (60.84%), Query Frame = -2
Query:  160 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 585
            TT   +RL ++   L       GVS  P  ++I TW   I G + T +E  ++KLSL F  +YP KPP VKF +  FHPNV   G+ICLDILQ++WS  YD   IL SIQSLL EPNP SP NS AA L   N+ +Y K VQ+
Sbjct:    2 TTPSRRRLMRDFKKLQ-EDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYEKRVQQ 143          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBE2A_MOUSE (Ubiquitin-conjugating enzyme E2 A OS=Mus musculus GN=Ube2a PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.405e-27
Identity = 66/141 (46.81%), Postives = 85/141 (60.28%), Query Frame = -2
Query:  166 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMV 585
            +T   +RL ++   L       GVS  P   +I  W   I G +GT +E  ++KL++ F  +YP KPP V+F +  FHPNV   G+ICLDILQ++WS  YD  +IL SIQSLL EPNP SP NS AA L   NK +Y K V
Sbjct:    2 STPARRRLMRDFKRLQ-EDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRV 141          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBE2A_HUMAN (Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens GN=UBE2A PE=2 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 2.405e-27
Identity = 66/141 (46.81%), Postives = 85/141 (60.28%), Query Frame = -2
Query:  166 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMV 585
            +T   +RL ++   L       GVS  P   +I  W   I G +GT +E  ++KL++ F  +YP KPP V+F +  FHPNV   G+ICLDILQ++WS  YD  +IL SIQSLL EPNP SP NS AA L   NK +Y K V
Sbjct:    2 STPARRRLMRDFKRLQ-EDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRV 141          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBE2B_RAT (Ubiquitin-conjugating enzyme E2 B OS=Rattus norvegicus GN=Ube2b PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.358e-27
Identity = 66/141 (46.81%), Postives = 85/141 (60.28%), Query Frame = -2
Query:  166 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMV 585
            +T   +RL ++   L      +GVS  P   +I  W   I G +GT +E  ++KL + F  +YP KPP V+F +  FHPNV   G+ICLDILQ++WS  YD  +IL SIQSLL EPNP SP NS AA L   NK +Y K V
Sbjct:    2 STPARRRLMRDFKRLQ-EDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRV 141          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBE2B_RABIT (Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus cuniculus GN=UBE2B PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.358e-27
Identity = 66/141 (46.81%), Postives = 85/141 (60.28%), Query Frame = -2
Query:  166 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMV 585
            +T   +RL ++   L      +GVS  P   +I  W   I G +GT +E  ++KL + F  +YP KPP V+F +  FHPNV   G+ICLDILQ++WS  YD  +IL SIQSLL EPNP SP NS AA L   NK +Y K V
Sbjct:    2 STPARRRLMRDFKRLQ-EDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRV 141          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBE2B_MOUSE (Ubiquitin-conjugating enzyme E2 B OS=Mus musculus GN=Ube2b PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.358e-27
Identity = 66/141 (46.81%), Postives = 85/141 (60.28%), Query Frame = -2
Query:  166 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMV 585
            +T   +RL ++   L      +GVS  P   +I  W   I G +GT +E  ++KL + F  +YP KPP V+F +  FHPNV   G+ICLDILQ++WS  YD  +IL SIQSLL EPNP SP NS AA L   NK +Y K V
Sbjct:    2 STPARRRLMRDFKRLQ-EDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRV 141          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBE2B_HUMAN (Ubiquitin-conjugating enzyme E2 B OS=Homo sapiens GN=UBE2B PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.358e-27
Identity = 66/141 (46.81%), Postives = 85/141 (60.28%), Query Frame = -2
Query:  166 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMV 585
            +T   +RL ++   L      +GVS  P   +I  W   I G +GT +E  ++KL + F  +YP KPP V+F +  FHPNV   G+ICLDILQ++WS  YD  +IL SIQSLL EPNP SP NS AA L   NK +Y K V
Sbjct:    2 STPARRRLMRDFKRLQ-EDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRV 141          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBE2B_BOVIN (Ubiquitin-conjugating enzyme E2 B OS=Bos taurus GN=UBE2B PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.358e-27
Identity = 66/141 (46.81%), Postives = 85/141 (60.28%), Query Frame = -2
Query:  166 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMV 585
            +T   +RL ++   L      +GVS  P   +I  W   I G +GT +E  ++KL + F  +YP KPP V+F +  FHPNV   G+ICLDILQ++WS  YD  +IL SIQSLL EPNP SP NS AA L   NK +Y K V
Sbjct:    2 STPARRRLMRDFKRLQ-EDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRV 141          
The following BLAST results are available for this feature:
BLAST of CN188231 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
UBC11_SCHPO1.606e-3952.20Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosa... [more]
UBC11_YEAST1.407e-3554.55Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharo... [more]
UBC1_CAEEL2.175e-2848.95Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditi... [more]
UBE2A_MOUSE2.405e-2746.81Ubiquitin-conjugating enzyme E2 A OS=Mus musculus ... [more]
UBE2A_HUMAN2.405e-2746.81Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens ... [more]
UBE2B_RAT5.358e-2746.81Ubiquitin-conjugating enzyme E2 B OS=Rattus norveg... [more]
UBE2B_RABIT5.358e-2746.81Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus c... [more]
UBE2B_MOUSE5.358e-2746.81Ubiquitin-conjugating enzyme E2 B OS=Mus musculus ... [more]
UBE2B_HUMAN5.358e-2746.81Ubiquitin-conjugating enzyme E2 B OS=Homo sapiens ... [more]
UBE2B_BOVIN5.358e-2746.81Ubiquitin-conjugating enzyme E2 B OS=Bos taurus GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0005L08_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005L08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188231 ID=CN188231; Name=CN188231; organism=Citrus sinensis; type=EST; length=736bp
TTTTTTGAACTTATGTAATCAGTTTTCATTGAAACAGTTCCAAACTGAAA
CAAGCCCTTCCCCTTGAGCTTTACAGAGAAATAATGTGGAAGCCTAACAT
CCGATTTTGTATCTGTTTTGCTGTTCAAATTAGCTCTCAAATTCTCCAGC
AAAGTACTGTTTCTGGACCATTTTTCTGTAATCTTCCTTATTGTTCAACA
GAGCTGCAGCATAGCTGTTGAGAGGGCTCTCTGGATTAGGCTCTCCCAAT
AAACTTTGAATGGACAAAAGAATCGTTCTGCAATCATAAGCTGAAGACCA
CTTGTCCTGAAGGATGTCTAGGCATATGTTGCCATACTGATCAACATTTG
GATGGAAGCACATAGTTTCAAACTTGACTTGGGGTGGCTTGAAAGGATAA
TCCAGAGGAAAATGCAAAGAAAGTTTGTATGATAAACCCTCATACATAGT
TCCCTTTCCACCCTCAATTGTGCCAATCCAAGTGAAAATGCTCTCGCCTT
CAGGAAAGGCCGAGACCCCAAGATCACCTCCACTCATCATAAGAGACATC
AATTCCTTCTGAAGCCTTTGAGTAACGGATGTTGTATCGACGGTGTTAGG
AGAAGAGACAGGCTGCTTCGACGAAGCAGCGGCAGTTGCACGTAAATTTT
CAACCGTCGGATTTGGCCGCACCTCCATGATTAGCAAAGAAGAATCACTG
ATCAACGGCCGATGATCAATGACGATAATCAAGCCT
back to top