CN188231

Overview
NameCN188231
Unique NameCN188231
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBC7_SCHPO (Ubiquitin-conjugating enzyme E2-18 kDa OS=Schizosaccharomyces pombe GN=ubc3 PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.180e-20
Identity = 59/152 (38.82%), Postives = 82/152 (53.95%), Query Frame = -2
Query:  160 QRLQKELMSLMMSGGDLGVSAFPEGES-IFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDIL-------------QDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAAL-LNNKEDYRKMVQK 570
            +RL KE   L  +G D G++A P  E   FTW   I+G  GT +EG  Y  +L FP DYP  PP +KFE   FHPNV + G +C+ IL              ++WS       ILLS+ S+L EPN ES  N  A  +   ++E+Y ++V++
Sbjct:    8 RRLMKEYKELTENGPD-GITAGPSNEDDFFTWDCLIQGPDGTPFEGGLYPATLKFPSDYPLGPPTLKFECEFFHPNVYKDGTVCISILHAPGDDPNMYESSSERWSPVQSVEKILLSVMSMLAEPNDESGANIDACKMWREDREEYCRVVRR 158          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBC1_SCHPO (Ubiquitin-conjugating enzyme E2 1 OS=Schizosaccharomyces pombe GN=ubc1 PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 4.857e-20
Identity = 50/134 (37.31%), Postives = 79/134 (58.96%), Query Frame = -2
Query:  178 TQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNV-DQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAAL-LNNKEDY 573
            ++R+ KEL  +       G+  +   + I    G   G +GT YEG  + + +  P+DYPF+PP++ F+T  +HPNV  Q G ICLDIL+D+WS  Y  ++ L+S+QSLL  P P +P ++  A + L N + +
Sbjct:    6 SRRIAKELADVQQDK-QAGIQVWTINDDISHLKGMFRGPEGTPYEGGYFVVDIEIPIDYPFRPPKMNFDTKIYHPNVSSQTGAICLDILKDQWSPVYTMKSALISLQSLLCTPEPSNPQDAQVAQVYLQNYQQF 138          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBE2T_BOVIN (Ubiquitin-conjugating enzyme E2 T OS=Bos taurus GN=UBE2T PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.413e-19
Identity = 49/122 (40.16%), Postives = 73/122 (59.84%), Query Frame = -2
Query:  220 TQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDIL----QDKWSSAYDCRTILLSIQSLLGEPNPESPL 573
            T RL++EL SL+ +    G++ + +G+ +      I GG  T YE   +KL +H P  YPF+PPQ++F T  +HPN+D  G ICLD+L    +  W  + +  T+L  IQ L+ EPNP+ PL
Sbjct:    4 TSRLKREL-SLLAAEPPPGITCWQDGDRMEDLRAQILGGANTPYEKGVFKLEVHIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATLLTCIQQLMAEPNPDDPL 124          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBE2U_MACFA (Ubiquitin-conjugating enzyme E2 U OS=Macaca fascicularis GN=UBE2U PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.161e-19
Identity = 47/125 (37.60%), Postives = 77/125 (61.60%), Query Frame = -2
Query:  154 GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQY-GNICLDILQD--KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQKQY 519
            G++A P  E +  W   IEG + ++++GL ++L++HF  +Y + PP VKF T+ FHPNVD + G  C+D L +  KW++ Y   +ILL++Q +L  P  E+P+N  AA +L   E   + + K +
Sbjct:   23 GITARPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFVTIPFHPNVDPHTGQPCIDFLDNPKKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILTKDESLYRTILKLF 147          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBE2U_HUMAN (Ubiquitin-conjugating enzyme E2 U OS=Homo sapiens GN=UBE2U PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.546e-18
Identity = 48/123 (39.02%), Postives = 78/123 (63.41%), Query Frame = -2
Query:  163 GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQY-GNICLDILQ--DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKED-YRKMVQ 519
            G++A P  E +  W   IEG + ++++GL ++L++HF  +Y + PP VKF T+ FHPNVD + G  C+D L   +KW++ Y   +ILL++Q +L  P  E+P+N  AA +L   E  YR +++
Sbjct:   23 GITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRTILR 145          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBE2S_RAT (Ubiquitin-conjugating enzyme E2 S OS=Rattus norvegicus GN=Ube2s PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.546e-18
Identity = 52/134 (38.81%), Postives = 75/134 (55.97%), Query Frame = -2
Query:  178 VTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAA-ALLNNKEDY 576
            + + + KE+ +L     D G+  FP  E +     TIEG +GT Y G  +++ L    D+P  PP+  F T  FHPNV   G IC+++L+  W++    R +LL+I+ LL  PNPES LN  A   LL N E+Y
Sbjct:   12 IIRLVYKEVTTLTADPPD-GIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGPNGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEY 144          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBE2S_MOUSE (Ubiquitin-conjugating enzyme E2 S OS=Mus musculus GN=Ube2s PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.546e-18
Identity = 52/134 (38.81%), Postives = 75/134 (55.97%), Query Frame = -2
Query:  178 VTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAA-ALLNNKEDY 576
            + + + KE+ +L     D G+  FP  E +     TIEG +GT Y G  +++ L    D+P  PP+  F T  FHPNV   G IC+++L+  W++    R +LL+I+ LL  PNPES LN  A   LL N E+Y
Sbjct:   12 IIRLVYKEVTTLTADPPD-GIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGPNGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEY 144          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBE2S_HUMAN (Ubiquitin-conjugating enzyme E2 S OS=Homo sapiens GN=UBE2S PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 4.546e-18
Identity = 52/134 (38.81%), Postives = 75/134 (55.97%), Query Frame = -2
Query:  178 VTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAA-ALLNNKEDY 576
            + + + KE+ +L     D G+  FP  E +     TIEG +GT Y G  +++ L    D+P  PP+  F T  FHPNV   G IC+++L+  W++    R +LL+I+ LL  PNPES LN  A   LL N E+Y
Sbjct:   12 IIRLVYKEVTTLTADPPD-GIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEY 144          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBE2S_BOVIN (Ubiquitin-conjugating enzyme E2 S OS=Bos taurus GN=UBE2S PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.546e-18
Identity = 52/134 (38.81%), Postives = 75/134 (55.97%), Query Frame = -2
Query:  178 VTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAA-ALLNNKEDY 576
            + + + KE+ +L     D G+  FP  E +     TIEG +GT Y G  +++ L    D+P  PP+  F T  FHPNV   G IC+++L+  W++    R +LL+I+ LL  PNPES LN  A   LL N E+Y
Sbjct:   12 IIRLVYKEVTTLTADPPD-GIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEY 144          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBC7_CAEEL (Probable ubiquitin-conjugating enzyme E2 7 OS=Caenorhabditis elegans GN=ubc-7 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.546e-18
Identity = 52/148 (35.14%), Postives = 79/148 (53.38%), Query Frame = -2
Query:  160 LQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQD-------------KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQK 564
            L+K+L  +     D   +   +   I+ W   + G   T+YEG  +K  L FP DYP KPP++KF +  +HPN+D+ GN+C+ IL D             +W   +   TILLS+ S+L +PN ESP N  AA +   +E+Y +  +K
Sbjct:    8 LKKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPANVDAAKM--QRENYAEFKKK 153          
The following BLAST results are available for this feature:
BLAST of CN188231 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
UBC7_SCHPO2.180e-2038.82Ubiquitin-conjugating enzyme E2-18 kDa OS=Schizosa... [more]
UBC1_SCHPO4.857e-2037.31Ubiquitin-conjugating enzyme E2 1 OS=Schizosacchar... [more]
UBE2T_BOVIN1.413e-1940.16Ubiquitin-conjugating enzyme E2 T OS=Bos taurus GN... [more]
UBE2U_MACFA9.161e-1937.60Ubiquitin-conjugating enzyme E2 U OS=Macaca fascic... [more]
UBE2U_HUMAN4.546e-1839.02Ubiquitin-conjugating enzyme E2 U OS=Homo sapiens ... [more]
UBE2S_RAT4.546e-1838.81Ubiquitin-conjugating enzyme E2 S OS=Rattus norveg... [more]
UBE2S_MOUSE4.546e-1838.81Ubiquitin-conjugating enzyme E2 S OS=Mus musculus ... [more]
UBE2S_HUMAN4.546e-1838.81Ubiquitin-conjugating enzyme E2 S OS=Homo sapiens ... [more]
UBE2S_BOVIN4.546e-1838.81Ubiquitin-conjugating enzyme E2 S OS=Bos taurus GN... [more]
UBC7_CAEEL4.546e-1835.14Probable ubiquitin-conjugating enzyme E2 7 OS=Caen... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005L08_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005L08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188231 ID=CN188231; Name=CN188231; organism=Citrus sinensis; type=EST; length=736bp
TTTTTTGAACTTATGTAATCAGTTTTCATTGAAACAGTTCCAAACTGAAA
CAAGCCCTTCCCCTTGAGCTTTACAGAGAAATAATGTGGAAGCCTAACAT
CCGATTTTGTATCTGTTTTGCTGTTCAAATTAGCTCTCAAATTCTCCAGC
AAAGTACTGTTTCTGGACCATTTTTCTGTAATCTTCCTTATTGTTCAACA
GAGCTGCAGCATAGCTGTTGAGAGGGCTCTCTGGATTAGGCTCTCCCAAT
AAACTTTGAATGGACAAAAGAATCGTTCTGCAATCATAAGCTGAAGACCA
CTTGTCCTGAAGGATGTCTAGGCATATGTTGCCATACTGATCAACATTTG
GATGGAAGCACATAGTTTCAAACTTGACTTGGGGTGGCTTGAAAGGATAA
TCCAGAGGAAAATGCAAAGAAAGTTTGTATGATAAACCCTCATACATAGT
TCCCTTTCCACCCTCAATTGTGCCAATCCAAGTGAAAATGCTCTCGCCTT
CAGGAAAGGCCGAGACCCCAAGATCACCTCCACTCATCATAAGAGACATC
AATTCCTTCTGAAGCCTTTGAGTAACGGATGTTGTATCGACGGTGTTAGG
AGAAGAGACAGGCTGCTTCGACGAAGCAGCGGCAGTTGCACGTAAATTTT
CAACCGTCGGATTTGGCCGCACCTCCATGATTAGCAAAGAAGAATCACTG
ATCAACGGCCGATGATCAATGACGATAATCAAGCCT
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