CN188231

Overview
NameCN188231
Unique NameCN188231
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UB2SA_XENLA (Ubiquitin-conjugating enzyme E2 S-A OS=Xenopus laevis GN=ube2s-A PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.546e-18
Identity = 52/134 (38.81%), Postives = 75/134 (55.97%), Query Frame = -2
Query:  178 VTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAA-ALLNNKEDY 576
            + + + KE+ +L     D G+  FP  E +     TIEG +GT Y G  +++ L    D+P  PP+  F T  FHPNV   G IC+++L+  W++    R +LL+I+ LL  PNPES LN  A   LL N E+Y
Sbjct:   12 IIRLVYKEVTTLTADPPD-GIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGPNGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEY 144          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UB2R2_RABIT (Ubiquitin-conjugating enzyme E2 R2 OS=Oryctolagus cuniculus GN=UBE2R2 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.938e-18
Identity = 54/170 (31.76%), Postives = 84/170 (49.41%), Query Frame = -2
Query:  133 TSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDIL-------------QDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKED-------YRKMVQKQYFAGEFES 582
            TS  + L  EL SL     +       +   ++ W   I G   T+YEG  +K  + FP+DYP+ PP  +F T  +HPN+ + G++C+ IL              ++W+   + RTILLS+ SLL EPN  SP N  A+ +     D       Y ++++KQ  A + E+
Sbjct:    7 TSSQKALMLELKSLQEEPVEGFRITLVDESDLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPYSPPTFRFLTKMWHPNIYENGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMFRKWRDSKGKDKEYAEIIRKQVSATKAEA 176          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UB2R2_MOUSE (Ubiquitin-conjugating enzyme E2 R2 OS=Mus musculus GN=Ube2r2 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.938e-18
Identity = 54/170 (31.76%), Postives = 84/170 (49.41%), Query Frame = -2
Query:  133 TSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDIL-------------QDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKED-------YRKMVQKQYFAGEFES 582
            TS  + L  EL SL     +       +   ++ W   I G   T+YEG  +K  + FP+DYP+ PP  +F T  +HPN+ + G++C+ IL              ++W+   + RTILLS+ SLL EPN  SP N  A+ +     D       Y ++++KQ  A + E+
Sbjct:    7 TSSQKALMLELKSLQEEPVEGFRITLVDESDLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPYSPPTFRFLTKMWHPNIYENGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMFRKWRDSKGKDKEYAEIIRKQVSATKAEA 176          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UB2R2_HUMAN (Ubiquitin-conjugating enzyme E2 R2 OS=Homo sapiens GN=UBE2R2 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.938e-18
Identity = 54/170 (31.76%), Postives = 84/170 (49.41%), Query Frame = -2
Query:  133 TSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDIL-------------QDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKED-------YRKMVQKQYFAGEFES 582
            TS  + L  EL SL     +       +   ++ W   I G   T+YEG  +K  + FP+DYP+ PP  +F T  +HPN+ + G++C+ IL              ++W+   + RTILLS+ SLL EPN  SP N  A+ +     D       Y ++++KQ  A + E+
Sbjct:    7 TSSQKALMLELKSLQEEPVEGFRITLVDESDLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPYSPPTFRFLTKMWHPNIYENGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMFRKWRDSKGKDKEYAEIIRKQVSATKAEA 176          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBE2S_BRAFL (Ubiquitin-conjugating enzyme E2 S OS=Branchiostoma floridae GN=BRAFLDRAFT_259979 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.013e-17
Identity = 55/145 (37.93%), Postives = 79/145 (54.48%), Query Frame = -2
Query:  181 VSSPNTVDTTS--VTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKED 609
            +S  + V+  S  + +++ KE++ L     + GV  FP  + I     TIEG  GT YEG  +K+ L    D+P  PP+  F T  FHPNV + G IC++ L+  W +    + ILL+I+ LL  PNPES LN  A  LL  + D
Sbjct:    1 MSGSSNVENLSPQIIRQVAKEVLDLANHPPE-GVKVFPNEQDITDVQATIEGPGGTPYEGGQFKIKLSLGKDFPQTPPKGFFLTKIFHPNVAKNGEICVNTLKKDWKADLGLKHILLTIKCLLIYPNPESALNEEAGKLLLEQYD 144          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBCX_DICDI (Ubiquitin-conjugating enzyme E2 pex4 OS=Dictyostelium discoideum GN=pex4 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.013e-17
Identity = 48/128 (37.50%), Postives = 72/128 (56.25%), Query Frame = -2
Query:  190 RLQKELMSLMMSGGDLGVSAFPEGES-IFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVD-QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNN 567
            RL KE   L     +  +  +P  ES ++ W+  I+G   T YE   ++L +  P +YP +PP +KF T  FHPN+  + G ICLD+L+  WS+ Y  +++  SI +LL  P  +SPLN  A  L+ N
Sbjct:    4 RLMKEYKVLQNEEFE-DILLYPRDESDLYRWVAIIKGPPDTPYENGKFELDISVPTNYPLQPPTIKFVTKIFHPNIHFKTGEICLDLLKTSWSAIYTLQSVCRSIIALLSLPEADSPLNCDAGNLIRN 130          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBC21_ARATH (Probable ubiquitin carrier protein E2 21 OS=Arabidopsis thaliana GN=UBC21 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.013e-17
Identity = 45/113 (39.82%), Postives = 67/113 (59.29%), Query Frame = -2
Query:  190 DLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVD-QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNN 525
            D  +    +  +IF W   I+G   T YEG  ++L+   P  YP +PPQV+F T  FHPNV  + G ICLDIL++ WS A+  +++  +I +L+  P P+SPLN  +  LL +
Sbjct:   22 DPDIQLICDDTNIFKWTALIKGPSETPYEGGVFQLAFSVPEPYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRS 134          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBE2S_DANRE (Ubiquitin-conjugating enzyme E2 S OS=Danio rerio GN=ube2s PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.728e-17
Identity = 51/145 (35.17%), Postives = 77/145 (53.10%), Query Frame = -2
Query:  133 RLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQKQYFAGEFES 567
            RL  + +S + +    G+  +P  E I     +IEG +GT Y G  +++ L    D+P  PP+  F T  FHPNV   G IC+++L+  W +    R +LL+I+ LL  PNPES LN  A  LL   EDY++   + +   E  +
Sbjct:   14 RLVYKEVSALAADPPEGIKIYPSEEDITELHTSIEGPEGTPYAGGVFRMRLVLGKDFPAVPPRGYFLTKIFHPNVGHKGEICVNVLKRDWKAELGLRHVLLTIKCLLIHPNPESALNEEAGKLL--LEDYKEYASRAHLLTEIHA 156          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBC15_SCHPO (Ubiquitin-conjugating enzyme E2 15 OS=Schizosaccharomyces pombe GN=ubc15 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.728e-17
Identity = 51/151 (33.77%), Postives = 78/151 (51.66%), Query Frame = -2
Query:  160 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ-------------DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAA-ALLNNKEDYRKMVQK 570
            Q L+K+L  +  +          + +SIF W   I G + T+YEG  +  +L FP DYP  PP++KF T  +HPNV   G +C+ IL              ++W   +   TIL+S+ S+L  PN ESP N  AA     N ++++K V++
Sbjct:    8 QLLRKQLKEIQKNPPQGFSVGLVDDKSIFEWEVMIIGPEDTLYEGGFFHATLSFPQDYPLMPPKMKFTTEIWHPNVHPNGEVCISILHPPGDDKYGYEDAGERWLPVHSPETILISVISMLSSPNDESPANIDAAKEFRENPQEFKKRVRR 158          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UB2SB_XENLA (Ubiquitin-conjugating enzyme E2 S-B OS=Xenopus laevis GN=ube2s-B PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.728e-17
Identity = 52/134 (38.81%), Postives = 73/134 (54.48%), Query Frame = -2
Query:  178 VTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAA-ALLNNKEDY 576
            + +R+ KE+ S + S    G+   P  E I      IEG +GT Y G  +++ L    D+P  PP+  F T  FHPNV   G IC+++L+  W +    R +LL+I+ LL  PNPES LN  A   LL N E+Y
Sbjct:   12 IIRRVYKEV-STLTSDPPEGIKIIPNEEDITDVQVNIEGPEGTPYAGGMFRMKLILGKDFPAAPPKGYFLTKIFHPNVSNNGEICVNVLKKDWKAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEY 144          
The following BLAST results are available for this feature:
BLAST of CN188231 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
UB2SA_XENLA4.546e-1838.81Ubiquitin-conjugating enzyme E2 S-A OS=Xenopus lae... [more]
UB2R2_RABIT5.938e-1831.76Ubiquitin-conjugating enzyme E2 R2 OS=Oryctolagus ... [more]
UB2R2_MOUSE5.938e-1831.76Ubiquitin-conjugating enzyme E2 R2 OS=Mus musculus... [more]
UB2R2_HUMAN5.938e-1831.76Ubiquitin-conjugating enzyme E2 R2 OS=Homo sapiens... [more]
UBE2S_BRAFL1.013e-1737.93Ubiquitin-conjugating enzyme E2 S OS=Branchiostoma... [more]
UBCX_DICDI1.013e-1737.50Ubiquitin-conjugating enzyme E2 pex4 OS=Dictyostel... [more]
UBC21_ARATH1.013e-1739.82Probable ubiquitin carrier protein E2 21 OS=Arabid... [more]
UBE2S_DANRE1.728e-1735.17Ubiquitin-conjugating enzyme E2 S OS=Danio rerio G... [more]
UBC15_SCHPO1.728e-1733.77Ubiquitin-conjugating enzyme E2 15 OS=Schizosaccha... [more]
UB2SB_XENLA1.728e-1738.81Ubiquitin-conjugating enzyme E2 S-B OS=Xenopus lae... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0005L08_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005L08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188231 ID=CN188231; Name=CN188231; organism=Citrus sinensis; type=EST; length=736bp
TTTTTTGAACTTATGTAATCAGTTTTCATTGAAACAGTTCCAAACTGAAA
CAAGCCCTTCCCCTTGAGCTTTACAGAGAAATAATGTGGAAGCCTAACAT
CCGATTTTGTATCTGTTTTGCTGTTCAAATTAGCTCTCAAATTCTCCAGC
AAAGTACTGTTTCTGGACCATTTTTCTGTAATCTTCCTTATTGTTCAACA
GAGCTGCAGCATAGCTGTTGAGAGGGCTCTCTGGATTAGGCTCTCCCAAT
AAACTTTGAATGGACAAAAGAATCGTTCTGCAATCATAAGCTGAAGACCA
CTTGTCCTGAAGGATGTCTAGGCATATGTTGCCATACTGATCAACATTTG
GATGGAAGCACATAGTTTCAAACTTGACTTGGGGTGGCTTGAAAGGATAA
TCCAGAGGAAAATGCAAAGAAAGTTTGTATGATAAACCCTCATACATAGT
TCCCTTTCCACCCTCAATTGTGCCAATCCAAGTGAAAATGCTCTCGCCTT
CAGGAAAGGCCGAGACCCCAAGATCACCTCCACTCATCATAAGAGACATC
AATTCCTTCTGAAGCCTTTGAGTAACGGATGTTGTATCGACGGTGTTAGG
AGAAGAGACAGGCTGCTTCGACGAAGCAGCGGCAGTTGCACGTAAATTTT
CAACCGTCGGATTTGGCCGCACCTCCATGATTAGCAAAGAAGAATCACTG
ATCAACGGCCGATGATCAATGACGATAATCAAGCCT
back to top