CN188231

Overview
NameCN188231
Unique NameCN188231
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBE2S_NEMVE (Ubiquitin-conjugating enzyme E2 S OS=Nematostella vectensis GN=v1g237158 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.255e-16
Identity = 47/117 (40.17%), Postives = 64/117 (54.70%), Query Frame = -2
Query:  172 GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EDYRK 519
            G+  F   E I     +IEG  GT YEG  +K+ L    D+P  PP+  F T  FHPNV + G IC++ L+  W      + +LL+++ LL  PNPES LN  A  LL  + +DY K
Sbjct:   33 GIKVFSNDEDITDIQASIEGPTGTPYEGGIFKIKLVLGKDFPAAPPKGFFLTKIFHPNVAKNGEICVNTLKKDWKPDLGIKQVLLTVKCLLIVPNPESALNEEAGKLLLERYDDYSK 149          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBC7_ARATH (Ubiquitin-conjugating enzyme E2 7 OS=Arabidopsis thaliana GN=UBC7 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.558e-16
Identity = 51/149 (34.23%), Postives = 76/149 (51.01%), Query Frame = -2
Query:  160 LQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDIL-------------QDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKED-YRKMVQK 564
            LQK+L  L     D   +   + ++IF W  TI G   T+YEG  +   + FP +YP  PP V+F +  +HPNV   G +C+ IL              ++W+  +   +I+LSI S+L  PN ESP N  AA    +K D ++K V +
Sbjct:    9 LQKQLKDLCKHPVDGFSAGLVDEKNIFEWSVTIIGPPDTLYEGGFFNAIMTFPQNYPNSPPTVRFTSDMWHPNVYSDGRVCISILHPPGDDPSGYELASERWTPVHTVESIMLSIISMLSGPNDESPANVEAAKEWRDKRDEFKKKVSR 157          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UB2G1_RAT (Ubiquitin-conjugating enzyme E2 G1 OS=Rattus norvegicus GN=Ube2g1 PE=2 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 5.558e-16
Identity = 41/112 (36.61%), Postives = 64/112 (57.14%), Query Frame = -2
Query:  205 EGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDIL-------------QDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAA 501
            +   ++ W   I G   T+YEG  +K  L FP DYP +PP++KF T  +HPNVD+ G++C+ IL             +++W   +   TI++S+ S+L +PN +SP N  AA
Sbjct:   31 DDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAA 142          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UB2G1_MOUSE (Ubiquitin-conjugating enzyme E2 G1 OS=Mus musculus GN=Ube2g1 PE=2 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 5.558e-16
Identity = 41/112 (36.61%), Postives = 64/112 (57.14%), Query Frame = -2
Query:  205 EGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDIL-------------QDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAA 501
            +   ++ W   I G   T+YEG  +K  L FP DYP +PP++KF T  +HPNVD+ G++C+ IL             +++W   +   TI++S+ S+L +PN +SP N  AA
Sbjct:   31 DDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAA 142          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UB2G1_HUMAN (Ubiquitin-conjugating enzyme E2 G1 OS=Homo sapiens GN=UBE2G1 PE=1 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 5.558e-16
Identity = 41/112 (36.61%), Postives = 64/112 (57.14%), Query Frame = -2
Query:  205 EGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDIL-------------QDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAA 501
            +   ++ W   I G   T+YEG  +K  L FP DYP +PP++KF T  +HPNVD+ G++C+ IL             +++W   +   TI++S+ S+L +PN +SP N  AA
Sbjct:   31 DDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAA 142          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBC_ASFB7 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (strain Badajoz 1971 Vero-adapted) GN=UBC PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.259e-16
Identity = 47/120 (39.17%), Postives = 65/120 (54.17%), Query Frame = -2
Query:  157 SIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQD--------KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQKQ 492
            +I  W   + G   T+YEG  +K  + FP +YP+ PP++ F +  +HPN+   G +C+ IL           WS A    TILLS+ SLL EPNP+SP N  AA      + YRK V K+
Sbjct:   29 NITEWDVILRGPPDTLYEGGLFKAKVAFPPEYPYAPPKLTFTSEMWHPNIYPDGRLCISILHGDNAEEQGMTWSPAQKIDTILLSVISLLNEPNPDSPANVDAA------KSYRKYVYKE 142          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBC12_YARLI (NEDD8-conjugating enzyme UBC12 OS=Yarrowia lipolytica GN=UBC12 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.259e-16
Identity = 45/147 (30.61%), Postives = 78/147 (53.06%), Query Frame = -2
Query:  145 TSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAA-ALLNNKEDYRKMVQKQYFAG 582
            T+   R+QK+L  L +       + FP  E I  +  T+   +G  Y+G  ++ S +   ++P +PP+VK     +HPN+D  GN+CL+IL++ W        +++ +Q L  EPN   PLN  AA  +  N+E++++ V+     G
Sbjct:   23 TAAQLRVQKDLSELSLPS--TMKTHFPSAEDIMNFELTVRPDEG-FYQGGEFRFSFYVNPNFPHEPPKVKCLQKVYHPNIDLEGNVCLNILREDWKPVLSLNAVMIGLQYLFLEPNASDPLNKDAAHQMTANREEFKRNVKHSMAGG 166          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBE2H_MOUSE (Ubiquitin-conjugating enzyme E2 H OS=Mus musculus GN=Ube2h PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.480e-16
Identity = 42/104 (40.38%), Postives = 63/104 (60.58%), Query Frame = -2
Query:  160 GGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQ-YGNICLDILQDKWSSAYDCRTILLS-IQSLLGEPNPESPLNSYAAAL-LNNKEDYRKMVQK 462
            G +GT YEG  +K+ +  P  YPFK P + F    FHPN+D+  G +CLD++   W++ YD   I  S +  LL  PNP  PLN  AAA+ L+  E+Y++ +++
Sbjct:   40 GPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKE 143          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBE2H_HUMAN (Ubiquitin-conjugating enzyme E2 H OS=Homo sapiens GN=UBE2H PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.480e-16
Identity = 42/104 (40.38%), Postives = 63/104 (60.58%), Query Frame = -2
Query:  160 GGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQ-YGNICLDILQDKWSSAYDCRTILLS-IQSLLGEPNPESPLNSYAAAL-LNNKEDYRKMVQK 462
            G +GT YEG  +K+ +  P  YPFK P + F    FHPN+D+  G +CLD++   W++ YD   I  S +  LL  PNP  PLN  AAA+ L+  E+Y++ +++
Sbjct:   40 GPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKE 143          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBE2H_BOVIN (Ubiquitin-conjugating enzyme E2 H OS=Bos taurus GN=UBE2H PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.480e-16
Identity = 42/104 (40.38%), Postives = 63/104 (60.58%), Query Frame = -2
Query:  160 GGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQ-YGNICLDILQDKWSSAYDCRTILLS-IQSLLGEPNPESPLNSYAAAL-LNNKEDYRKMVQK 462
            G +GT YEG  +K+ +  P  YPFK P + F    FHPN+D+  G +CLD++   W++ YD   I  S +  LL  PNP  PLN  AAA+ L+  E+Y++ +++
Sbjct:   40 GPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKE 143          
The following BLAST results are available for this feature:
BLAST of CN188231 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
UBE2S_NEMVE4.255e-1640.17Ubiquitin-conjugating enzyme E2 S OS=Nematostella ... [more]
UBC7_ARATH5.558e-1634.23Ubiquitin-conjugating enzyme E2 7 OS=Arabidopsis t... [more]
UB2G1_RAT5.558e-1636.61Ubiquitin-conjugating enzyme E2 G1 OS=Rattus norve... [more]
UB2G1_MOUSE5.558e-1636.61Ubiquitin-conjugating enzyme E2 G1 OS=Mus musculus... [more]
UB2G1_HUMAN5.558e-1636.61Ubiquitin-conjugating enzyme E2 G1 OS=Homo sapiens... [more]
UBC_ASFB77.259e-1639.17Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC12_YARLI7.259e-1630.61NEDD8-conjugating enzyme UBC12 OS=Yarrowia lipolyt... [more]
UBE2H_MOUSE9.480e-1640.38Ubiquitin-conjugating enzyme E2 H OS=Mus musculus ... [more]
UBE2H_HUMAN9.480e-1640.38Ubiquitin-conjugating enzyme E2 H OS=Homo sapiens ... [more]
UBE2H_BOVIN9.480e-1640.38Ubiquitin-conjugating enzyme E2 H OS=Bos taurus GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005L08_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005L08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188231 ID=CN188231; Name=CN188231; organism=Citrus sinensis; type=EST; length=736bp
TTTTTTGAACTTATGTAATCAGTTTTCATTGAAACAGTTCCAAACTGAAA
CAAGCCCTTCCCCTTGAGCTTTACAGAGAAATAATGTGGAAGCCTAACAT
CCGATTTTGTATCTGTTTTGCTGTTCAAATTAGCTCTCAAATTCTCCAGC
AAAGTACTGTTTCTGGACCATTTTTCTGTAATCTTCCTTATTGTTCAACA
GAGCTGCAGCATAGCTGTTGAGAGGGCTCTCTGGATTAGGCTCTCCCAAT
AAACTTTGAATGGACAAAAGAATCGTTCTGCAATCATAAGCTGAAGACCA
CTTGTCCTGAAGGATGTCTAGGCATATGTTGCCATACTGATCAACATTTG
GATGGAAGCACATAGTTTCAAACTTGACTTGGGGTGGCTTGAAAGGATAA
TCCAGAGGAAAATGCAAAGAAAGTTTGTATGATAAACCCTCATACATAGT
TCCCTTTCCACCCTCAATTGTGCCAATCCAAGTGAAAATGCTCTCGCCTT
CAGGAAAGGCCGAGACCCCAAGATCACCTCCACTCATCATAAGAGACATC
AATTCCTTCTGAAGCCTTTGAGTAACGGATGTTGTATCGACGGTGTTAGG
AGAAGAGACAGGCTGCTTCGACGAAGCAGCGGCAGTTGCACGTAAATTTT
CAACCGTCGGATTTGGCCGCACCTCCATGATTAGCAAAGAAGAATCACTG
ATCAACGGCCGATGATCAATGACGATAATCAAGCCT
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