CN188231

Overview
NameCN188231
Unique NameCN188231
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBC_ASFWA (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Warthog/Namibia/Wart80/1980) GN=UBC PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.480e-16
Identity = 45/116 (38.79%), Postives = 64/116 (55.17%), Query Frame = -2
Query:  157 WIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQD--------KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQKQ 480
            W   + G   T+YEG  +K  + FP +YP+ PP++ F +  +HPN+   G +C+ IL           WS A    TILLS+ SLL EPNP+SP N  AA      + YRK++ K+
Sbjct:   33 WDVILRGPPDTLYEGGLFKAKVAFPPEYPYAPPRLTFTSEMWHPNIYPDGKLCISILHGDNAEEQGMTWSPAQKIDTILLSVISLLNEPNPDSPANVDAA------KSYRKLMHKE 142          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBC9_SCHPO (SUMO-conjugating enzyme ubc9 OS=Schizosaccharomyces pombe GN=hus5 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.480e-16
Identity = 46/117 (39.32%), Postives = 64/117 (54.70%), Query Frame = -2
Query:  157 GESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDK--WSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQKQ 498
            G  +  W   I G   T +EG  YKL++ FP +YP +PP+ +F    FHPNV   G +CL IL ++  W  A   + ILL IQ LL +PN  SP  + A  +   +K +Y K V+ Q
Sbjct:   35 GLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRVRAQ 151          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBC9_PAGMA (SUMO-conjugating enzyme UBC9 OS=Pagrus major GN=ube2i PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.480e-16
Identity = 46/107 (42.99%), Postives = 61/107 (57.01%), Query Frame = -2
Query:  157 IEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQD--KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQKQ 468
            I G KGT +EG  +KL + F  DYP  PP+ KFE   FHPNV   G +CL IL++   W  A   + ILL IQ LL EPN + P  + A  +   ++ +Y K V+ Q
Sbjct:   45 IPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIFCQDRTEYEKRVRAQ 151          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBC9_CAEEL (SUMO-conjugating enzyme UBC9 OS=Caenorhabditis elegans GN=ubc-9 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.480e-16
Identity = 42/115 (36.52%), Postives = 64/115 (55.65%), Query Frame = -2
Query:  157 SIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDK--WSSAYDCRTILLSIQSLLGEPNPESPLNSYAAAL-LNNKEDYRKMVQKQ 492
            ++F W   I G K T++EG  Y++ + F  D+P  PP+ KFE   FHPNV   G +CL +L +   W  +   + +L+ IQ LL  PN E P  + A  +   N+ +Y K V+K+
Sbjct:   37 NLFNWECAIPGRKDTIWEGGLYRIRMLFKDDFPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDENKDWKPSISIKQLLIGIQDLLNHPNIEDPAQAEAYQIYCQNRAEYEKRVKKE 151          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBC4_ARATH (Ubiquitin-conjugating enzyme E2 4 OS=Arabidopsis thaliana GN=UBC4 PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 9.480e-16
Identity = 50/145 (34.48%), Postives = 77/145 (53.10%), Query Frame = -2
Query:  154 TSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQY-GNICLDILQDKWSSAYDCRTILLS-IQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQKQY 582
            +S ++R + ++M LMMS  D  V    +G   F       G K ++Y+G  +K+ +  P  YP+K P V F T  +HPNVD+  G++CLD++   WS  +D   +  + +  LL  PNP  PLN  AAAL+       +   K+Y
Sbjct:    2 SSPSKRREMDMMKLMMS--DYKVETINDGMQEF--YVEFNGPKDSLYQGGVWKIRVELPDAYPYKSPSVGFITKIYHPNVDELSGSVCLDVINQTWSPMFDLVNVFETFLPQLLLYPNPSDPLNGEAAALMMRDRPAYEQRVKEY 142          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBC14_ARATH (Ubiquitin-conjugating enzyme E2 14 OS=Arabidopsis thaliana GN=UBC14 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.480e-16
Identity = 49/149 (32.89%), Postives = 76/149 (51.01%), Query Frame = -2
Query:  160 LQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDIL-------------QDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAA-ALLNNKEDYRKMVQK 564
            LQK+L  L     D   +   + +++F W  +I G   T+YEG  +   + FP +YP  PP V F +  +HPNV   G +C+ IL              ++W+  +   +I+LSI S+L  PN ESP N  AA    +N+ ++RK V +
Sbjct:   10 LQKQLKDLCKKPVDGFSAGLVDEKNVFQWSVSIMGPPDTLYEGGFFNAIMSFPENYPVSPPTVTFTSEMWHPNVYSDGKVCISILHPPGDDPHGYELASERWTPVHTVESIVLSIISMLSGPNDESPANVEAAKEWRDNRAEFRKKVSR 158          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBC12_MOUSE (NEDD8-conjugating enzyme Ubc12 OS=Mus musculus GN=Ube2m PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.480e-16
Identity = 41/101 (40.59%), Postives = 58/101 (57.43%), Query Frame = -2
Query:  145 YEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQKQYFAG 444
            Y+   +  S      YP  PP+VK ETM +HPN+D  GN+CL+IL++ W       +I+  +Q L  EPNPE PLN  AA +L NN+  + + VQ+    G
Sbjct:   71 YKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGG 171          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBC12_HUMAN (NEDD8-conjugating enzyme Ubc12 OS=Homo sapiens GN=UBE2M PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.480e-16
Identity = 41/101 (40.59%), Postives = 58/101 (57.43%), Query Frame = -2
Query:  145 YEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQKQYFAG 444
            Y+   +  S      YP  PP+VK ETM +HPN+D  GN+CL+IL++ W       +I+  +Q L  EPNPE PLN  AA +L NN+  + + VQ+    G
Sbjct:   71 YKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGG 171          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBC12_BOVIN (NEDD8-conjugating enzyme Ubc12 OS=Bos taurus GN=UBE2M PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.480e-16
Identity = 41/101 (40.59%), Postives = 58/101 (57.43%), Query Frame = -2
Query:  145 YEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQKQYFAG 444
            Y+   +  S      YP  PP+VK ETM +HPN+D  GN+CL+IL++ W       +I+  +Q L  EPNPE PLN  AA +L NN+  + + VQ+    G
Sbjct:   71 YKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGG 171          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UB2G1_MACFA (Ubiquitin-conjugating enzyme E2 G1 OS=Macaca fascicularis GN=UBE2G1 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.480e-16
Identity = 41/112 (36.61%), Postives = 63/112 (56.25%), Query Frame = -2
Query:  205 EGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQD-------------KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAA 501
            +   ++ W   I G   T+YEG  +K  L FP DYP +PP++KF T  +HPNVD+ G++C+ IL +             +W   +   TI++S+ S+L +PN +SP N  AA
Sbjct:   31 DDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEGRWLPIHTVETIMISVISMLADPNGDSPANVDAA 142          
The following BLAST results are available for this feature:
BLAST of CN188231 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
UBC_ASFWA9.480e-1638.79Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC9_SCHPO9.480e-1639.32SUMO-conjugating enzyme ubc9 OS=Schizosaccharomyce... [more]
UBC9_PAGMA9.480e-1642.99SUMO-conjugating enzyme UBC9 OS=Pagrus major GN=ub... [more]
UBC9_CAEEL9.480e-1636.52SUMO-conjugating enzyme UBC9 OS=Caenorhabditis ele... [more]
UBC4_ARATH9.480e-1634.48Ubiquitin-conjugating enzyme E2 4 OS=Arabidopsis t... [more]
UBC14_ARATH9.480e-1632.89Ubiquitin-conjugating enzyme E2 14 OS=Arabidopsis ... [more]
UBC12_MOUSE9.480e-1640.59NEDD8-conjugating enzyme Ubc12 OS=Mus musculus GN=... [more]
UBC12_HUMAN9.480e-1640.59NEDD8-conjugating enzyme Ubc12 OS=Homo sapiens GN=... [more]
UBC12_BOVIN9.480e-1640.59NEDD8-conjugating enzyme Ubc12 OS=Bos taurus GN=UB... [more]
UB2G1_MACFA9.480e-1636.61Ubiquitin-conjugating enzyme E2 G1 OS=Macaca fasci... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005L08_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005L08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188231 ID=CN188231; Name=CN188231; organism=Citrus sinensis; type=EST; length=736bp
TTTTTTGAACTTATGTAATCAGTTTTCATTGAAACAGTTCCAAACTGAAA
CAAGCCCTTCCCCTTGAGCTTTACAGAGAAATAATGTGGAAGCCTAACAT
CCGATTTTGTATCTGTTTTGCTGTTCAAATTAGCTCTCAAATTCTCCAGC
AAAGTACTGTTTCTGGACCATTTTTCTGTAATCTTCCTTATTGTTCAACA
GAGCTGCAGCATAGCTGTTGAGAGGGCTCTCTGGATTAGGCTCTCCCAAT
AAACTTTGAATGGACAAAAGAATCGTTCTGCAATCATAAGCTGAAGACCA
CTTGTCCTGAAGGATGTCTAGGCATATGTTGCCATACTGATCAACATTTG
GATGGAAGCACATAGTTTCAAACTTGACTTGGGGTGGCTTGAAAGGATAA
TCCAGAGGAAAATGCAAAGAAAGTTTGTATGATAAACCCTCATACATAGT
TCCCTTTCCACCCTCAATTGTGCCAATCCAAGTGAAAATGCTCTCGCCTT
CAGGAAAGGCCGAGACCCCAAGATCACCTCCACTCATCATAAGAGACATC
AATTCCTTCTGAAGCCTTTGAGTAACGGATGTTGTATCGACGGTGTTAGG
AGAAGAGACAGGCTGCTTCGACGAAGCAGCGGCAGTTGCACGTAAATTTT
CAACCGTCGGATTTGGCCGCACCTCCATGATTAGCAAAGAAGAATCACTG
ATCAACGGCCGATGATCAATGACGATAATCAAGCCT
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