CN188231

Overview
NameCN188231
Unique NameCN188231
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBE2S_DROAN (Ubiquitin-conjugating enzyme E2 S OS=Drosophila ananassae GN=GF21161 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.869e-12
Identity = 38/96 (39.58%), Postives = 52/96 (54.17%), Query Frame = -2
Query:  181 IEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKED 468
            I+G  GT Y    +++ L    D+P  PP+  F T  FHPNV   G IC++ L+  W      + ILL+I+ LL  PNPES LN  A  +L  + D
Sbjct:   50 IDGPAGTPYAAGIFRVKLTLNKDFPQTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYD 145          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBC16_ARATH (Probable ubiquitin carrier protein E2 16 OS=Arabidopsis thaliana GN=UBC16 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.869e-12
Identity = 44/116 (37.93%), Postives = 61/116 (52.59%), Query Frame = -2
Query:  247 TQRLQKELMSLMMSGGDLGVSAFPEG------ESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKF-ETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLL 573
            T RLQKEL+   M+         P G      +++  WI  + G  GT+Y   +Y+L + FP  YP + PQV F      HP++   G+ICLDIL D WS A    +I +SI S+L
Sbjct:   17 TNRLQKELVEWQMNP--------PTGFKHKVTDNLQRWIIEVIGAPGTLYANDTYQLQVDFPEHYPMESPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISILSML 124          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UB2L6_HUMAN (Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Homo sapiens GN=UBE2L6 PE=1 SV=4)

HSP 1 Score: 71.633 bits (174), Expect = 4.869e-12
Identity = 37/97 (38.14%), Postives = 53/97 (54.64%), Query Frame = -2
Query:  160 YEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDIL-QDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 444
            Y   ++ L + FP +YPFKPP +KF T  +HPNVD+ G ICL I+  + W        +L ++  L+  PN   PL    A LL  N E +RK  ++
Sbjct:   46 YHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEE 142          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBC12_KLULA (NEDD8-conjugating enzyme UBC12 OS=Kluyveromyces lactis GN=UBC12 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.305e-12
Identity = 33/83 (39.76%), Postives = 49/83 (59.04%), Query Frame = -2
Query:  196 YEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL 444
            Y G +Y  ++     YP +PP VK     +HPN+D  GN+CL++L++ W+ A D ++I++ I  L  EPN   PLN  AA  L
Sbjct:   72 YAGGTYYFNVFIKDTYPMEPPVVKCMHRIYHPNIDIDGNVCLNLLREDWTPALDIQSIIIGILFLFHEPNGRDPLNKDAAKTL 154          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UB2L6_BOVIN (Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Bos taurus GN=UBE2L6 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.305e-12
Identity = 41/142 (28.87%), Postives = 73/142 (51.41%), Query Frame = -2
Query:  160 SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDK-WSSAYDCRTILLSIQSLLGEPNPESPLN-SYAAALLNNKEDYRKMVQK 579
            + ++R+ KEL  L         +   E +++  W   +   +   Y   +++L + FP +YPF+PP VKF T  +HPNVD+ G +CL I+  K W ++     +L ++  L+ +P P  P+    A  L  + E + +M Q+
Sbjct:    2 TASKRVAKELEDLQKELPKYLRNLCSEEDNVLVWHALLLPERPP-YNLKAFRLCISFPREYPFQPPTVKFTTRIYHPNVDRDGRVCLPIISKKNWKASTRTCQVLEALNMLVNQPEPGQPVRLELAEQLTQDPELFDQMAQE 142          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBE2S_DROWI (Ubiquitin-conjugating enzyme E2 S OS=Drosophila willistoni GN=GK16201 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.085e-11
Identity = 38/96 (39.58%), Postives = 52/96 (54.17%), Query Frame = -2
Query:  181 IEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKED 468
            I+G  GT Y    +++ L    D+P  PP+  F T  FHPNV   G IC++ L+  W      + ILL+I+ LL  PNPES LN  A  +L  + D
Sbjct:   50 IDGPAGTPYAIGVFRVKLTLSKDFPQTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYD 145          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBE2S_DROPS (Ubiquitin-conjugating enzyme E2 S OS=Drosophila pseudoobscura pseudoobscura GN=GA22810 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.085e-11
Identity = 38/96 (39.58%), Postives = 52/96 (54.17%), Query Frame = -2
Query:  181 IEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKED 468
            I+G  GT Y    +++ L    D+P  PP+  F T  FHPNV   G IC++ L+  W      + ILL+I+ LL  PNPES LN  A  +L  + D
Sbjct:   50 IDGPAGTPYAVGIFRVKLTLSKDFPQTPPKAYFLTKIFHPNVAGNGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYD 145          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBE2S_DROPE (Ubiquitin-conjugating enzyme E2 S OS=Drosophila persimilis GN=GL16001 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.085e-11
Identity = 38/96 (39.58%), Postives = 52/96 (54.17%), Query Frame = -2
Query:  181 IEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKED 468
            I+G  GT Y    +++ L    D+P  PP+  F T  FHPNV   G IC++ L+  W      + ILL+I+ LL  PNPES LN  A  +L  + D
Sbjct:   50 IDGPAGTPYAVGIFRVKLTLSKDFPQTPPKAYFLTKIFHPNVAGNGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYD 145          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBC18_ARATH (Probable ubiquitin carrier protein E2 18 OS=Arabidopsis thaliana GN=UBC18 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.417e-11
Identity = 45/140 (32.14%), Postives = 69/140 (49.29%), Query Frame = -2
Query:  214 SSPNTVDTTSVT-QRLQKELMSLMMSGGDLGVSAFPEG------ESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMC-FHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLL-GEPNPESPLNS 606
            SSP+    + +   RLQKEL    ++         P G      +++  W+  + G  GT+Y   +Y L + FP  YP + PQV F      HP++   G+ICLDIL D WS A    ++ +SI S+L   P  + P ++
Sbjct:    5 SSPSRKALSKIACNRLQKELSEWQVNP--------PTGFKHRVTDNLQKWVIEVTGAPGTLYANETYNLQVEFPQHYPMEAPQVIFVPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLSSSPEKQRPTDN 136          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBC15_ARATH (Ubiquitin-conjugating enzyme 15 OS=Arabidopsis thaliana GN=UBC15 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.383e-11
Identity = 42/126 (33.33%), Postives = 64/126 (50.79%), Query Frame = -2
Query:  214 RLQKELMSLMMSGGDLGVSAFPEG------ESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMC-FHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLL-GEPNPESPLNS 567
            RLQKEL    ++         P G      +++  W   + G  GT+Y   +Y+L + FP  YP + PQV F +    HP++   G+ICLDIL D WS A    ++ +SI S+L   P  + P ++
Sbjct:   19 RLQKELSEWQLNP--------PTGFRHKVTDNLQKWTIDVTGAPGTLYANETYQLQVEFPEHYPMEAPQVVFVSPAPSHPHIYSNGHICLDILYDSWSPAMTVNSVCISILSMLSSSPAKQRPADN 136          
The following BLAST results are available for this feature:
BLAST of CN188231 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
UBE2S_DROAN4.869e-1239.58Ubiquitin-conjugating enzyme E2 S OS=Drosophila an... [more]
UBC16_ARATH4.869e-1237.93Probable ubiquitin carrier protein E2 16 OS=Arabid... [more]
UB2L6_HUMAN4.869e-1238.14Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Homo s... [more]
UBC12_KLULA8.305e-1239.76NEDD8-conjugating enzyme UBC12 OS=Kluyveromyces la... [more]
UB2L6_BOVIN8.305e-1228.87Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Bos ta... [more]
UBE2S_DROWI1.085e-1139.58Ubiquitin-conjugating enzyme E2 S OS=Drosophila wi... [more]
UBE2S_DROPS1.085e-1139.58Ubiquitin-conjugating enzyme E2 S OS=Drosophila ps... [more]
UBE2S_DROPE1.085e-1139.58Ubiquitin-conjugating enzyme E2 S OS=Drosophila pe... [more]
UBC18_ARATH1.417e-1132.14Probable ubiquitin carrier protein E2 18 OS=Arabid... [more]
UBC15_ARATH5.383e-1133.33Ubiquitin-conjugating enzyme 15 OS=Arabidopsis tha... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0005L08_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005L08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188231 ID=CN188231; Name=CN188231; organism=Citrus sinensis; type=EST; length=736bp
TTTTTTGAACTTATGTAATCAGTTTTCATTGAAACAGTTCCAAACTGAAA
CAAGCCCTTCCCCTTGAGCTTTACAGAGAAATAATGTGGAAGCCTAACAT
CCGATTTTGTATCTGTTTTGCTGTTCAAATTAGCTCTCAAATTCTCCAGC
AAAGTACTGTTTCTGGACCATTTTTCTGTAATCTTCCTTATTGTTCAACA
GAGCTGCAGCATAGCTGTTGAGAGGGCTCTCTGGATTAGGCTCTCCCAAT
AAACTTTGAATGGACAAAAGAATCGTTCTGCAATCATAAGCTGAAGACCA
CTTGTCCTGAAGGATGTCTAGGCATATGTTGCCATACTGATCAACATTTG
GATGGAAGCACATAGTTTCAAACTTGACTTGGGGTGGCTTGAAAGGATAA
TCCAGAGGAAAATGCAAAGAAAGTTTGTATGATAAACCCTCATACATAGT
TCCCTTTCCACCCTCAATTGTGCCAATCCAAGTGAAAATGCTCTCGCCTT
CAGGAAAGGCCGAGACCCCAAGATCACCTCCACTCATCATAAGAGACATC
AATTCCTTCTGAAGCCTTTGAGTAACGGATGTTGTATCGACGGTGTTAGG
AGAAGAGACAGGCTGCTTCGACGAAGCAGCGGCAGTTGCACGTAAATTTT
CAACCGTCGGATTTGGCCGCACCTCCATGATTAGCAAAGAAGAATCACTG
ATCAACGGCCGATGATCAATGACGATAATCAAGCCT
back to top