CN188231

Overview
NameCN188231
Unique NameCN188231
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5994 contig Csv1_Contig5994:40..775. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBC2_EMENI (Ubiquitin-conjugating enzyme E2 2 OS=Emericella nidulans GN=uvsJ PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.251e-25
Identity = 62/143 (43.36%), Postives = 87/143 (60.84%), Query Frame = -2
Query:  160 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 585
            +TS  +RL ++    M +    GVSA P  +++ TW   I G   T +E  +++L +HF   YP KPP VKF +  FHPNV   G +CLDILQ++WS  YD   IL SIQSLL +PN  SP N  A+ L  +N+++Y K V++
Sbjct:    2 STSARRRLMRDFKR-MQTDPPAGVSASPVADNVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPGVKFISQMFHPNVYGTGELCLDILQNRWSPTYDVAAILTSIQSLLNDPNTSSPANVEASNLYRDNRKEYIKRVRE 143          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBC2_ASPFU (Ubiquitin-conjugating enzyme E2 2 OS=Aspergillus fumigatus GN=ubc2 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.251e-25
Identity = 62/143 (43.36%), Postives = 87/143 (60.84%), Query Frame = -2
Query:  160 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 585
            +TS  +RL ++    M +    GVSA P  +++ TW   I G   T +E  +++L +HF   YP KPP VKF +  FHPNV   G +CLDILQ++WS  YD   IL SIQSLL +PN  SP N  A+ L  +N+++Y K V++
Sbjct:    2 STSARRRLMRDFKR-MQTDPPAGVSASPVADNVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPGVKFISQMFHPNVYGTGELCLDILQNRWSPTYDVAAILTSIQSLLNDPNTSSPANVEASNLYKDNRKEYIKRVRE 143          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBC2_DICDI (Ubiquitin-conjugating enzyme E2 2 OS=Dictyostelium discoideum GN=ubc2 PE=3 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 3.840e-25
Identity = 63/143 (44.06%), Postives = 86/143 (60.14%), Query Frame = -2
Query:  160 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 585
            +T+  +RL ++   L  S    G+S  P   +I  W   I G   +++EG ++KLSL F  +YP   P VKF +  FHPNV   G+ICLDILQ++WS  YD   IL SIQSLL +PNP SP NS +A L   NK +Y + V++
Sbjct:    2 STAARRRLMRDFKRLQ-SDPPAGISGAPLENNILMWQAVIFGPDDSIWEGATFKLSLQFSEEYPNDAPTVKFLSKMFHPNVYADGSICLDILQNQWSPIYDIAAILTSIQSLLCDPNPNSPANSESARLFRENKREYNRKVKE 143          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBCD2_DROME (Ubiquitin-conjugating enzyme E2-24 kDa OS=Drosophila melanogaster GN=UbcD2 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.550e-25
Identity = 58/137 (42.34%), Postives = 86/137 (62.77%), Query Frame = -2
Query:  163 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL-NSYAAALLNNKEDYRKMVQ 570
            +R+QKEL  + +       SA P+G++++ W+ TI G  G++YEG  + L +HF  +YPFKPP+V F T  +H N++  G ICLDIL+D WS A     +LLSI SLL + NP  PL  S A   L N+E++ ++ +
Sbjct:   89 KRIQKELAEITLDPPP-NCSAGPKGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLQNREEHDRIAR 224          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UB2D4_HUMAN (Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens GN=UBE2D4 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.550e-25
Identity = 59/138 (42.75%), Postives = 84/138 (60.87%), Query Frame = -2
Query:  160 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL-NSYAAALLNNKEDYRKMVQK 570
            +R+QKEL  L         SA P G+ +F W  TI G   + Y+G  + L++HFP DYPFKPP+V F T  +HPN++  G+ICLDIL+ +WS A     +LLSI SLL +PNP+ PL    A     ++E Y ++ ++
Sbjct:    4 KRIQKELTDLQRDP-PAQCSAGPVGDDLFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPEIAHTYKADREKYNRLARE 140          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UB2D1_MOUSE (Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus GN=Ube2d1 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.550e-25
Identity = 59/134 (44.03%), Postives = 82/134 (61.19%), Query Frame = -2
Query:  172 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL-NSYAAALLNNKEDYRK 570
            +R+QKEL  L         SA P G+ +F W  TI G   + Y+G  + L++HFP DYPFKPP++ F T  +HPN++  G+ICLDIL+ +WS A     +LLSI SLL +PNP+ PL    A    ++KE Y +
Sbjct:    4 KRIQKELSDLQRDP-PAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNR 136          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UB2D1_HUMAN (Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens GN=UBE2D1 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.550e-25
Identity = 59/134 (44.03%), Postives = 82/134 (61.19%), Query Frame = -2
Query:  172 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL-NSYAAALLNNKEDYRK 570
            +R+QKEL  L         SA P G+ +F W  TI G   + Y+G  + L++HFP DYPFKPP++ F T  +HPN++  G+ICLDIL+ +WS A     +LLSI SLL +PNP+ PL    A    ++KE Y +
Sbjct:    4 KRIQKELSDLQRDP-PAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNR 136          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UB2D1_BOVIN (Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus GN=UBE2D1 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.550e-25
Identity = 59/134 (44.03%), Postives = 82/134 (61.19%), Query Frame = -2
Query:  172 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL-NSYAAALLNNKEDYRK 570
            +R+QKEL  L         SA P G+ +F W  TI G   + Y+G  + L++HFP DYPFKPP++ F T  +HPN++  G+ICLDIL+ +WS A     +LLSI SLL +PNP+ PL    A    ++KE Y +
Sbjct:    4 KRIQKELSDLQRDP-PAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNR 136          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBC2_CAEEL (Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditis elegans GN=let-70 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.554e-25
Identity = 61/140 (43.57%), Postives = 87/140 (62.14%), Query Frame = -2
Query:  160 QRLQKELMSLMMSGGD--LGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 570
            +R+QKEL  L   G D     SA P G+ +F W  TI G   + Y+G  + L++HFP DYPFKPP+V F T  +HPN++  G+ICLDIL+ +WS A     +LLSI SLL +PNP+ PL    A +   ++E Y ++ ++
Sbjct:    4 KRIQKELQDL---GRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLARE 140          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBC1_MAGGR (Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnaporthe grisea GN=UBC1 PE=3 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 8.554e-25
Identity = 58/119 (48.74%), Postives = 76/119 (63.87%), Query Frame = -2
Query:  220 QRLQKELMSLMMSGGD--LGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL 570
            +R+ KEL  L   G D     SA P GE +F W  TI G   + Y G  + L++HFP DYPFKPP+V F T  +HPN++  G+ICLDIL+D+WS A     +LLSI S+L +PNP+ PL
Sbjct:    4 KRINKELTDL---GRDPPSSCSAGPVGEDLFHWQATIMGPSDSPYAGGVFFLAIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSMLTDPNPDDPL 119          
The following BLAST results are available for this feature:
BLAST of CN188231 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
UBC2_EMENI2.251e-2543.36Ubiquitin-conjugating enzyme E2 2 OS=Emericella ni... [more]
UBC2_ASPFU2.251e-2543.36Ubiquitin-conjugating enzyme E2 2 OS=Aspergillus f... [more]
UBC2_DICDI3.840e-2544.06Ubiquitin-conjugating enzyme E2 2 OS=Dictyostelium... [more]
UBCD2_DROME6.550e-2542.34Ubiquitin-conjugating enzyme E2-24 kDa OS=Drosophi... [more]
UB2D4_HUMAN6.550e-2542.75Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens... [more]
UB2D1_MOUSE6.550e-2544.03Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus... [more]
UB2D1_HUMAN6.550e-2544.03Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens... [more]
UB2D1_BOVIN6.550e-2544.03Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus G... [more]
UBC2_CAEEL8.554e-2543.57Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditi... [more]
UBC1_MAGGR8.554e-2548.74Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnapor... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005L08_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005L08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188231 ID=CN188231; Name=CN188231; organism=Citrus sinensis; type=EST; length=736bp
TTTTTTGAACTTATGTAATCAGTTTTCATTGAAACAGTTCCAAACTGAAA
CAAGCCCTTCCCCTTGAGCTTTACAGAGAAATAATGTGGAAGCCTAACAT
CCGATTTTGTATCTGTTTTGCTGTTCAAATTAGCTCTCAAATTCTCCAGC
AAAGTACTGTTTCTGGACCATTTTTCTGTAATCTTCCTTATTGTTCAACA
GAGCTGCAGCATAGCTGTTGAGAGGGCTCTCTGGATTAGGCTCTCCCAAT
AAACTTTGAATGGACAAAAGAATCGTTCTGCAATCATAAGCTGAAGACCA
CTTGTCCTGAAGGATGTCTAGGCATATGTTGCCATACTGATCAACATTTG
GATGGAAGCACATAGTTTCAAACTTGACTTGGGGTGGCTTGAAAGGATAA
TCCAGAGGAAAATGCAAAGAAAGTTTGTATGATAAACCCTCATACATAGT
TCCCTTTCCACCCTCAATTGTGCCAATCCAAGTGAAAATGCTCTCGCCTT
CAGGAAAGGCCGAGACCCCAAGATCACCTCCACTCATCATAAGAGACATC
AATTCCTTCTGAAGCCTTTGAGTAACGGATGTTGTATCGACGGTGTTAGG
AGAAGAGACAGGCTGCTTCGACGAAGCAGCGGCAGTTGCACGTAAATTTT
CAACCGTCGGATTTGGCCGCACCTCCATGATTAGCAAAGAAGAATCACTG
ATCAACGGCCGATGATCAATGACGATAATCAAGCCT
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