CN188231

Overview
NameCN188231
Unique NameCN188231
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5994 contig Csv1_Contig5994:40..775. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBC2_NECHA (Ubiquitin-conjugating enzyme E2 2 OS=Nectria haematococca GN=UBC2 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.906e-24
Identity = 60/143 (41.96%), Postives = 87/143 (60.84%), Query Frame = -2
Query:  160 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 585
            +T+  +RL ++    M +    GVSA P  +++ TW   I G   T +E  +++L + F   YP KPPQVKF +  FHPNV   G +CLDILQ++WS  YD   +L SIQSLL +PN  SP N  A+ L  +N+++Y K V++
Sbjct:    2 STAARRRLMRDFKR-MQTDPPAGVSASPVPDNVMTWNAVIIGPADTPFEDGTFRLVMQFEEQYPNKPPQVKFISEMFHPNVYATGELCLDILQNRWSPTYDVAAVLTSIQSLLNDPNTGSPANVEASNLYKDNRKEYTKRVRE 143          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UB2D2_PIG (Ubiquitin-conjugating enzyme E2 D2 OS=Sus scrofa GN=UBE2D2 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.906e-24
Identity = 57/139 (41.01%), Postives = 81/139 (58.27%), Query Frame = -2
Query:  154 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQKQY 570
            +R+ KEL  L         SA P G+ +F W  TI G   + Y+G  + L++HFP DYPFKPP+V F T  +HPN++  G+ICLDIL+ +WS A     +LLSI SLL +PNP+ PL    A +     D    + +++
Sbjct:    4 KRIHKELNDLARDP-PAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREW 141          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBC2_CRYNE (Ubiquitin-conjugating enzyme E2 2 OS=Cryptococcus neoformans GN=UBC2 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.489e-24
Identity = 60/143 (41.96%), Postives = 85/143 (59.44%), Query Frame = -2
Query:  160 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 585
            +T+  +RL ++   L  S   +G+S  P  ++I  W   I G   T +E  S++L+L F   YP KPP V+F +  FHPN+   G +CLDILQ++WS  YD   IL S+QSLL +PNP SP N  AA L   N ++Y + V+K
Sbjct:    2 STAAKRRLIRDFKRLT-SDAPIGISGSPNPDNIMVWNAVIFGPPETPFEDGSFRLTLTFTDAYPNKPPTVRFISKMFHPNIYANGELCLDILQNRWSPTYDVAAILTSVQSLLNDPNPASPANVDAAQLFKENLKEYERRVKK 143          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UB2E2_MOUSE (Ubiquitin-conjugating enzyme E2 E2 OS=Mus musculus GN=Ube2e2 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.489e-24
Identity = 60/151 (39.74%), Postives = 89/151 (58.94%), Query Frame = -2
Query:  160 VSSPNTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL-NSYAAALLNNKEDYRKMVQK 609
            +SS      ++  +R+QKEL  + +       SA P+G++I+ W  TI G  G++YEG  + L + F  DYPFKPP+V F T  +H N++  G ICLDIL+D WS A     +LLSI SLL + NP  PL  S A   + N+ ++ +M ++
Sbjct:   45 ISSKTAAKLSTSAKRIQKELAEITLDPPP-NCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQ 194          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UB2E2_HUMAN (Ubiquitin-conjugating enzyme E2 E2 OS=Homo sapiens GN=UBE2E2 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.489e-24
Identity = 60/151 (39.74%), Postives = 89/151 (58.94%), Query Frame = -2
Query:  160 VSSPNTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL-NSYAAALLNNKEDYRKMVQK 609
            +SS      ++  +R+QKEL  + +       SA P+G++I+ W  TI G  G++YEG  + L + F  DYPFKPP+V F T  +H N++  G ICLDIL+D WS A     +LLSI SLL + NP  PL  S A   + N+ ++ +M ++
Sbjct:   45 ISSKTAAKLSTSAKRIQKELAEITLDPPP-NCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQ 194          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBC5_YEAST (Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharomyces cerevisiae GN=UBC5 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.251e-24
Identity = 58/122 (47.54%), Postives = 77/122 (63.11%), Query Frame = -2
Query:  220 SVTQRLQKELMSLMMSGGD--LGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL 579
            S ++R+ KEL  L   G D     SA P G+ ++ W  +I G   + Y G  + LS+HFP DYPFKPP+V F T  +HPN++  GNICLDIL+D+WS A     +LLSI SLL + NP+ PL
Sbjct:    2 SSSKRIAKELSDL---GRDPPASCSAGPVGDDLYHWQASIMGPSDSPYAGGVFFLSIHFPTDYPFKPPKVNFTTKIYHPNINSSGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPL 120          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBC2_TRIHA (Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma harzianum GN=UBC2 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.251e-24
Identity = 60/143 (41.96%), Postives = 86/143 (60.14%), Query Frame = -2
Query:  160 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 585
            +T+  +RL ++    M +    GVSA P  +++ TW   I G   T +E  +++L + F   YP KPPQVKF +  FHPNV   G +CLDILQ++WS  YD   +L SIQSLL +PN  SP N  A+ L  +N+ +Y K V++
Sbjct:    2 STAARRRLMRDFKR-MQTDPPAGVSASPIPDNVMTWNAVIIGPADTPFEDGTFRLVMQFEEQYPNKPPQVKFISQMFHPNVYANGELCLDILQNRWSPTYDVAAVLTSIQSLLNDPNTGSPANVEASNLYKDNRREYIKRVRE 143          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UB2D2_XENLA (Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laevis GN=ube2d2 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.251e-24
Identity = 58/138 (42.03%), Postives = 84/138 (60.87%), Query Frame = -2
Query:  160 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 570
            +R+ KEL  L         SA P G+ +F W  TI G   + Y+G  + L++HFP DYPFKPP+V F T  +HPN++  G+ICLDIL+ +WS A     +LLSI SLL +PNP+ PL    A +   ++E Y ++ ++
Sbjct:    4 KRIHKELNDLARDP-PAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 140          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UB2D2_RAT (Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norvegicus GN=Ube2d2 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.251e-24
Identity = 58/138 (42.03%), Postives = 84/138 (60.87%), Query Frame = -2
Query:  160 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 570
            +R+ KEL  L         SA P G+ +F W  TI G   + Y+G  + L++HFP DYPFKPP+V F T  +HPN++  G+ICLDIL+ +WS A     +LLSI SLL +PNP+ PL    A +   ++E Y ++ ++
Sbjct:    4 KRIHKELNDLARDP-PAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 140          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UB2D2_MOUSE (Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus GN=Ube2d2 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.251e-24
Identity = 58/138 (42.03%), Postives = 84/138 (60.87%), Query Frame = -2
Query:  160 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 570
            +R+ KEL  L         SA P G+ +F W  TI G   + Y+G  + L++HFP DYPFKPP+V F T  +HPN++  G+ICLDIL+ +WS A     +LLSI SLL +PNP+ PL    A +   ++E Y ++ ++
Sbjct:    4 KRIHKELNDLARDP-PAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 140          
The following BLAST results are available for this feature:
BLAST of CN188231 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
UBC2_NECHA1.906e-2441.96Ubiquitin-conjugating enzyme E2 2 OS=Nectria haema... [more]
UB2D2_PIG1.906e-2441.01Ubiquitin-conjugating enzyme E2 D2 OS=Sus scrofa G... [more]
UBC2_CRYNE2.489e-2441.96Ubiquitin-conjugating enzyme E2 2 OS=Cryptococcus ... [more]
UB2E2_MOUSE2.489e-2439.74Ubiquitin-conjugating enzyme E2 E2 OS=Mus musculus... [more]
UB2E2_HUMAN2.489e-2439.74Ubiquitin-conjugating enzyme E2 E2 OS=Homo sapiens... [more]
UBC5_YEAST3.251e-2447.54Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharo... [more]
UBC2_TRIHA3.251e-2441.96Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma h... [more]
UB2D2_XENLA3.251e-2442.03Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laev... [more]
UB2D2_RAT3.251e-2442.03Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norve... [more]
UB2D2_MOUSE3.251e-2442.03Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005L08_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005L08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188231 ID=CN188231; Name=CN188231; organism=Citrus sinensis; type=EST; length=736bp
TTTTTTGAACTTATGTAATCAGTTTTCATTGAAACAGTTCCAAACTGAAA
CAAGCCCTTCCCCTTGAGCTTTACAGAGAAATAATGTGGAAGCCTAACAT
CCGATTTTGTATCTGTTTTGCTGTTCAAATTAGCTCTCAAATTCTCCAGC
AAAGTACTGTTTCTGGACCATTTTTCTGTAATCTTCCTTATTGTTCAACA
GAGCTGCAGCATAGCTGTTGAGAGGGCTCTCTGGATTAGGCTCTCCCAAT
AAACTTTGAATGGACAAAAGAATCGTTCTGCAATCATAAGCTGAAGACCA
CTTGTCCTGAAGGATGTCTAGGCATATGTTGCCATACTGATCAACATTTG
GATGGAAGCACATAGTTTCAAACTTGACTTGGGGTGGCTTGAAAGGATAA
TCCAGAGGAAAATGCAAAGAAAGTTTGTATGATAAACCCTCATACATAGT
TCCCTTTCCACCCTCAATTGTGCCAATCCAAGTGAAAATGCTCTCGCCTT
CAGGAAAGGCCGAGACCCCAAGATCACCTCCACTCATCATAAGAGACATC
AATTCCTTCTGAAGCCTTTGAGTAACGGATGTTGTATCGACGGTGTTAGG
AGAAGAGACAGGCTGCTTCGACGAAGCAGCGGCAGTTGCACGTAAATTTT
CAACCGTCGGATTTGGCCGCACCTCCATGATTAGCAAAGAAGAATCACTG
ATCAACGGCCGATGATCAATGACGATAATCAAGCCT
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