CN188231

Overview
NameCN188231
Unique NameCN188231
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5994 contig Csv1_Contig5994:40..775. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBC30_ARATH (Ubiquitin carrier protein E2 30 OS=Arabidopsis thaliana GN=UBC30 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.242e-24
Identity = 53/118 (44.92%), Postives = 76/118 (64.41%), Query Frame = -2
Query:  220 TQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL 573
            ++R+ KEL  L      +  SA P G+ +F W  TI G   + + G  + +++HFP DYPFKPP+V F T  +HPN++  G+ICLDIL+++WS A     +LLSI SLL +PNP+ PL
Sbjct:    3 SKRINKELRDLQRDP-PVSCSAGPTGDDMFQWQATIMGPADSPFAGGVFLVTIHFPPDYPFKPPKVAFRTKVYHPNINSNGSICLDILKEQWSPALTVSKVLLSICSLLTDPNPDDPL 119          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBC2_NEUCR (Ubiquitin-conjugating enzyme E2 2 OS=Neurospora crassa GN=mus-8 PE=3 SV=3)

HSP 1 Score: 110.923 bits (276), Expect = 7.242e-24
Identity = 59/143 (41.26%), Postives = 86/143 (60.14%), Query Frame = -2
Query:  160 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 585
            +T+  +RL ++    M +    GVSA P  +++ TW   I G   T +E  +++L +HF   YP KPP VKF +  FHPNV   G +CLDILQ++WS  YD   +L SIQSLL +PN  S  N  A+ L  +N+++Y K V++
Sbjct:    2 STAARRRLMRDFKR-MQTDPPAGVSASPVPDNVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPSVKFISEMFHPNVYATGELCLDILQNRWSPTYDVAAVLTSIQSLLNDPNTGSRANVEASNLYKDNRKEYHKRVRE 143          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBC4_YEAST (Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces cerevisiae GN=UBC4 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.458e-24
Identity = 55/120 (45.83%), Postives = 75/120 (62.50%), Query Frame = -2
Query:  220 SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL 579
            S ++R+ KEL  L         SA P G+ ++ W  +I G   + Y G  + LS+HFP DYPFKPP++ F T  +HPN++  GNICLDIL+D+WS A     +LLSI SLL + NP+ PL
Sbjct:    2 SSSKRIAKELSDLERDP-PTSCSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFKPPKISFTTKIYHPNINANGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPL 120          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBC2_YARLI (Ubiquitin-conjugating enzyme E2 2 OS=Yarrowia lipolytica GN=UBC2 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.458e-24
Identity = 58/142 (40.85%), Postives = 83/142 (58.45%), Query Frame = -2
Query:  163 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQ 585
            +T+  +RL ++    M      GVSA P  +++ TW   I G   T +E  ++++ L F   YP KPP VKF +  FHPNV   G +CLDILQ++WS  YD   IL S+QSLL +PN  SP N  A+ L  ++++ Y K V+
Sbjct:    2 STTARRRLMRDFKR-MQQDPPQGVSASPVADNVLTWNAVIIGPAETPFEDGTFRMVLQFDEQYPNKPPAVKFVSQMFHPNVYSSGELCLDILQNRWSPTYDVAAILTSVQSLLNDPNTSSPANVEASMLYKDHRQQYEKRVR 142          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBC11_ARATH (Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis thaliana GN=UBC11 PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 9.458e-24
Identity = 55/118 (46.61%), Postives = 75/118 (63.56%), Query Frame = -2
Query:  220 TQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL 573
            ++R+ KEL  L         SA P  E +F W  TI G   + Y G  + +S+HFP DYPFKPP+V F+T  +HPN++  G+ICLDIL+++WS A     +LLSI SLL +PNP+ PL
Sbjct:    3 SKRILKELKDLQKDPPS-NCSAGPVAEDMFHWQATIMGPPESPYAGGVFLVSIHFPPDYPFKPPKVSFKTKVYHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPL 119          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UB2D3_BOVIN (Ubiquitin-conjugating enzyme E2 D3 OS=Bos taurus GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.458e-24
Identity = 56/139 (40.29%), Postives = 80/139 (57.55%), Query Frame = -2
Query:  154 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQKQY 570
            +R+ KEL  L         SA P G+ +F W  TI G   + Y+G  + L++HFP DYPFKPP+V F T  +HPN++   +ICLDIL+ +WS A     +LLSI SLL +PNP+ PL    A +     D    + +++
Sbjct:    4 KRINKELSDLARDP-PAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNDSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREW 141          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBC8_ARATH (Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis thaliana GN=UBC8 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.235e-23
Identity = 55/118 (46.61%), Postives = 74/118 (62.71%), Query Frame = -2
Query:  220 TQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL 573
            ++R+ KEL  L         SA P  E +F W  TI G   + Y G  + +++HFP DYPFKPP+V F T  FHPN++  G+ICLDIL+++WS A     +LLSI SLL +PNP+ PL
Sbjct:    3 SKRILKELKDLQKDP-PTSCSAGPVAEDMFHWQATIMGPAESPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPL 119          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBC10_ARATH (Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.235e-23
Identity = 55/118 (46.61%), Postives = 74/118 (62.71%), Query Frame = -2
Query:  220 TQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL 573
            ++R+ KEL  L         SA P  E +F W  TI G   + Y G  + +++HFP DYPFKPP+V F T  FHPN++  G+ICLDIL+++WS A     +LLSI SLL +PNP+ PL
Sbjct:    3 SKRILKELKDLQKDP-PTSCSAGPVAEDMFHWQATIMGPSESPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPL 119          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UB2E1_MOUSE (Ubiquitin-conjugating enzyme E2 E1 OS=Mus musculus GN=Ube2e1 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.235e-23
Identity = 62/169 (36.69%), Postives = 94/169 (55.62%), Query Frame = -2
Query:  160 NPTVENLRATAAASSKQPVSSPNTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL-NSYAAALLNNKEDYRKMVQK 663
            N   E   +T      +   S N+   ++  +R+QKEL  + +       SA P+G++I+ W  TI G  G++YEG  + L + F  +YPFKPP+V F T  +H N++  G ICLDIL+D WS A     +LLSI SLL + NP  PL  S A   + N+ ++ +M ++
Sbjct:   19 NQQTEKEGSTPKKKESKVSMSKNSKLLSTSAKRIQKELADITLDPPP-NCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQ 186          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UB2E1_HUMAN (Ubiquitin-conjugating enzyme E2 E1 OS=Homo sapiens GN=UBE2E1 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.107e-23
Identity = 62/155 (40.00%), Postives = 93/155 (60.00%), Query Frame = -2
Query:  160 SKQPVSSPNTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL-NSYAAALLNNKEDYRKMVQK 621
            SK  +S  + + +TS  +R+QKEL  + +       SA P+G++I+ W  TI G  G++YEG  + L + F  +YPFKPP+V F T  +H N++  G ICLDIL+D WS A     +LLSI SLL + NP  PL  S A   + N+ ++ +M ++
Sbjct:   34 SKVSMSKNSKLLSTSA-KRIQKELADITLDPPP-NCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQ 186          
The following BLAST results are available for this feature:
BLAST of CN188231 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
UBC30_ARATH7.242e-2444.92Ubiquitin carrier protein E2 30 OS=Arabidopsis tha... [more]
UBC2_NEUCR7.242e-2441.26Ubiquitin-conjugating enzyme E2 2 OS=Neurospora cr... [more]
UBC4_YEAST9.458e-2445.83Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces... [more]
UBC2_YARLI9.458e-2440.85Ubiquitin-conjugating enzyme E2 2 OS=Yarrowia lipo... [more]
UBC11_ARATH9.458e-2446.61Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis ... [more]
UB2D3_BOVIN9.458e-2440.29Ubiquitin-conjugating enzyme E2 D3 OS=Bos taurus G... [more]
UBC8_ARATH1.235e-2346.61Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis t... [more]
UBC10_ARATH1.235e-2346.61Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis ... [more]
UB2E1_MOUSE1.235e-2336.69Ubiquitin-conjugating enzyme E2 E1 OS=Mus musculus... [more]
UB2E1_HUMAN2.107e-2340.00Ubiquitin-conjugating enzyme E2 E1 OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005L08_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005L08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188231 ID=CN188231; Name=CN188231; organism=Citrus sinensis; type=EST; length=736bp
TTTTTTGAACTTATGTAATCAGTTTTCATTGAAACAGTTCCAAACTGAAA
CAAGCCCTTCCCCTTGAGCTTTACAGAGAAATAATGTGGAAGCCTAACAT
CCGATTTTGTATCTGTTTTGCTGTTCAAATTAGCTCTCAAATTCTCCAGC
AAAGTACTGTTTCTGGACCATTTTTCTGTAATCTTCCTTATTGTTCAACA
GAGCTGCAGCATAGCTGTTGAGAGGGCTCTCTGGATTAGGCTCTCCCAAT
AAACTTTGAATGGACAAAAGAATCGTTCTGCAATCATAAGCTGAAGACCA
CTTGTCCTGAAGGATGTCTAGGCATATGTTGCCATACTGATCAACATTTG
GATGGAAGCACATAGTTTCAAACTTGACTTGGGGTGGCTTGAAAGGATAA
TCCAGAGGAAAATGCAAAGAAAGTTTGTATGATAAACCCTCATACATAGT
TCCCTTTCCACCCTCAATTGTGCCAATCCAAGTGAAAATGCTCTCGCCTT
CAGGAAAGGCCGAGACCCCAAGATCACCTCCACTCATCATAAGAGACATC
AATTCCTTCTGAAGCCTTTGAGTAACGGATGTTGTATCGACGGTGTTAGG
AGAAGAGACAGGCTGCTTCGACGAAGCAGCGGCAGTTGCACGTAAATTTT
CAACCGTCGGATTTGGCCGCACCTCCATGATTAGCAAAGAAGAATCACTG
ATCAACGGCCGATGATCAATGACGATAATCAAGCCT
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