CN188231

Overview
NameCN188231
Unique NameCN188231
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBC2_USTMA (Ubiquitin-conjugating enzyme E2 2 OS=Ustilago maydis GN=UBC2 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.130e-23
Identity = 56/120 (46.67%), Postives = 74/120 (61.67%), Query Frame = -2
Query:  163 GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQ 519
            G+S  P  +++  W   I G   T +E  ++KL L F   YP KPP VKF +  FHPNV   G +CLDILQ++WS  YD   IL SIQSLL +PNP SP N+ AA+L   N ++Y + V+
Sbjct:   23 GISGAPCADNLMIWNAVIFGPADTPFEDGTFKLVLTFDESYPNKPPTVKFLSKMFHPNVYANGELCLDILQNRWSPTYDVAAILTSIQSLLHDPNPNSPANAEAASLYRENMKEYVRRVK 142          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBC2_DEBHA (Ubiquitin-conjugating enzyme E2 2 OS=Debaryomyces hansenii GN=UBC2 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.046e-22
Identity = 60/143 (41.96%), Postives = 83/143 (58.04%), Query Frame = -2
Query:  160 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 585
            +T   +RL ++    M      GVSA P  +++ +W   I G   T +E  +++L L F   YP KPP VKF +  FHPNV   G +CLDILQ++WS  YD  +IL SIQSLL +PN  SP N  AA L  +++  Y K V++
Sbjct:    2 STPAKRRLMRDFKR-MQQDAPSGVSASPLPDNVMSWNAVIIGPADTPFEDGTFRLILQFDEQYPNKPPSVKFISEMFHPNVYASGELCLDILQNRWSPTYDVSSILTSIQSLLNDPNISSPANVEAANLYKDHRSQYIKRVRE 143          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBE2N_DROME (Ubiquitin-conjugating enzyme E2 N OS=Drosophila melanogaster GN=ben PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.366e-22
Identity = 55/128 (42.97%), Postives = 78/128 (60.94%), Query Frame = -2
Query:  199 TSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAAL 582
            +S+ +R+ KE   LM      G++A P+  +   +   + G   + +EG  +KL L  P DYP   P+V+F T  +HPN+D+ G ICLD+L+DKWS A   RTILLSIQ+LL  PNP+ PL +  A L
Sbjct:    2 SSLPRRIIKETQRLMQEPVP-GINAIPDENNARYFHVIVTGPNDSPFEGGVFKLELFLPEDYPMSAPKVRFITKIYHPNIDRLGRICLDVLKDKWSPALQIRTILLSIQALLSAPNPDDPLANDVAEL 128          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBC2_CANAL (Ubiquitin-conjugating enzyme E2 2 OS=Candida albicans GN=UBC2 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.366e-22
Identity = 60/143 (41.96%), Postives = 82/143 (57.34%), Query Frame = -2
Query:  157 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQKQ 585
            +T   +RL ++    M      GVSA P  +++  W   I G   T +E  +++L L F   YP KPPQVKF +  FHPNV   G +CLDILQ++WS  YD  +IL S+QSLL +PN  SP N  AA   N  +D+R +  K+
Sbjct:    2 STPARRRLMRDFKR-MQQDPPSGVSASPLPDNVMKWNAVIIGPSDTPFEDGTFRLLLSFDEQYPNKPPQVKFISEMFHPNVYASGELCLDILQNRWSPTYDVSSILTSVQSLLNDPNISSPANVEAA---NLYKDHRSLYVKR 140          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBC4_CANAL (Ubiquitin-conjugating enzyme E2 4 OS=Candida albicans GN=UBC4 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.043e-22
Identity = 58/135 (42.96%), Postives = 80/135 (59.26%), Query Frame = -2
Query:  172 QRLQKELMSLMMSGGD--LGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRK 570
            +R+ KEL  L   G D     SA P G+ ++ W  +I G   + Y G  + LS+HFP DYP KPP++   T  +HPN++  GNICLDIL+D+WS A     +LLSI SLL + NP+ PL    A +   K+D +K
Sbjct:    4 KRINKELSDL---GRDPPSSCSAGPVGDDLYHWQASIMGPPDSPYAGGVFFLSIHFPTDYPLKPPKIALTTKIYHPNINSNGNICLDILKDQWSPALTISKVLLSICSLLTDANPDDPLVPEIAHIY--KQDRKK 133          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBC36_ARATH (Ubiquitin carrier protein E2 36 OS=Arabidopsis thaliana GN=UBC36 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.043e-22
Identity = 55/126 (43.65%), Postives = 78/126 (61.90%), Query Frame = -2
Query:  205 TSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAA 582
            +++ +R+ KE   L+      G+SA P  E++  +   I G   + YEG  +KL L  P +YP   P+V+F T  +HPN+D+ G ICLDIL+DKWS A   RT+LLSIQ+LL  PNP+ PL+   A
Sbjct:    4 SNLPRRIIKETQRLLSEPAP-GISASPSEENMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIA 128          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBC35_ARATH (Ubiquitin carrier protein E2 35 OS=Arabidopsis thaliana GN=UBC35 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.778e-22
Identity = 54/126 (42.86%), Postives = 78/126 (61.90%), Query Frame = -2
Query:  205 TSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAA 582
            +++ +R+ KE   L+      G+SA P  +++  +   I G   + YEG  +KL L  P +YP   P+V+F T  +HPN+D+ G ICLDIL+DKWS A   RT+LLSIQ+LL  PNP+ PL+   A
Sbjct:    4 SNLPRRIIKETQRLLSEPAP-GISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIA 128          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBC12_ARATH (Probable ubiquitin-conjugating enzyme E2 12 OS=Arabidopsis thaliana GN=UBC12 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.778e-22
Identity = 60/140 (42.86%), Postives = 79/140 (56.43%), Query Frame = -2
Query:  160 TQRLQKELMSLMMSGGDLGVSAFPEGES-IFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLN-NKEDYRKMVQK 573
            ++R+ +EL   M        SA P  E  IF W  TI G   + Y G  + +S+ F  DYPFKPP+V F+T  +HPN+D  G+ICLDIL+++WS A     +LLSI SLL +PNP  PL    A L   +K  Y    QK
Sbjct:    3 SKRISRELRD-MQRHPPANCSAGPVAEEDIFHWQATIMGPHDSPYSGGVFTVSIDFSSDYPFKPPKVNFKTKVYHPNIDSKGSICLDILKEQWSPAPTTSKVLLSICSLLTDPNPNDPLVPEIAHLYKVDKSKYESTAQK 141          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBC31_ARATH (Probable ubiquitin carrier protein E2 31 OS=Arabidopsis thaliana GN=UBC31 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.852e-22
Identity = 47/101 (46.53%), Postives = 64/101 (63.37%), Query Frame = -2
Query:  190 SIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNN 492
            +I+ W   I G  GT YEG  + LS+ FP DYPFKPP+  F+T  +HPN++  G+IC++IL+DKW+ A     +LLSI  LL +PNP+ PL      L  N
Sbjct:   35 NIYEWTAVIRGPDGTPYEGGMFNLSIKFPTDYPFKPPKFTFKTPIYHPNINDEGSICMNILKDKWTPALMVEKVLLSILLLLEKPNPDDPLVPEIGQLFKN 135          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBC27_ARATH (Ubiquitin carrier protein E2 27 OS=Arabidopsis thaliana GN=UBC27 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.156e-21
Identity = 54/136 (39.71%), Postives = 80/136 (58.82%), Query Frame = -2
Query:  163 RLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNV-DQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQ 567
            R+QKEL     +    G+   P+ +++    GTI G  GT YEG ++++ +  P  YPF+PP+++F T  +HPN+  Q G ICLDIL+D+WS A   +T L+SIQ+LL  P P+ P ++  A      E Y K  Q
Sbjct:    6 RIQKELQDCERNQDSSGIRVCPKSDNLTRLTGTIPGPIGTPYEGGTFQIDITMPDGYPFEPPKMQFSTKVWHPNISSQSGAICLDILKDQWSPALTLKTALVSIQALLSAPEPKDPQDAVVA------EQYMKNYQ 135          
The following BLAST results are available for this feature:
BLAST of CN188231 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
UBC2_USTMA6.130e-2346.67Ubiquitin-conjugating enzyme E2 2 OS=Ustilago mayd... [more]
UBC2_DEBHA1.046e-2241.96Ubiquitin-conjugating enzyme E2 2 OS=Debaryomyces ... [more]
UBE2N_DROME1.366e-2242.97Ubiquitin-conjugating enzyme E2 N OS=Drosophila me... [more]
UBC2_CANAL1.366e-2241.96Ubiquitin-conjugating enzyme E2 2 OS=Candida albic... [more]
UBC4_CANAL3.043e-2242.96Ubiquitin-conjugating enzyme E2 4 OS=Candida albic... [more]
UBC36_ARATH3.043e-2243.65Ubiquitin carrier protein E2 36 OS=Arabidopsis tha... [more]
UBC35_ARATH6.778e-2242.86Ubiquitin carrier protein E2 35 OS=Arabidopsis tha... [more]
UBC12_ARATH6.778e-2242.86Probable ubiquitin-conjugating enzyme E2 12 OS=Ara... [more]
UBC31_ARATH8.852e-2246.53Probable ubiquitin carrier protein E2 31 OS=Arabid... [more]
UBC27_ARATH1.156e-2139.71Ubiquitin carrier protein E2 27 OS=Arabidopsis tha... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005L08_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005L08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188231 ID=CN188231; Name=CN188231; organism=Citrus sinensis; type=EST; length=736bp
TTTTTTGAACTTATGTAATCAGTTTTCATTGAAACAGTTCCAAACTGAAA
CAAGCCCTTCCCCTTGAGCTTTACAGAGAAATAATGTGGAAGCCTAACAT
CCGATTTTGTATCTGTTTTGCTGTTCAAATTAGCTCTCAAATTCTCCAGC
AAAGTACTGTTTCTGGACCATTTTTCTGTAATCTTCCTTATTGTTCAACA
GAGCTGCAGCATAGCTGTTGAGAGGGCTCTCTGGATTAGGCTCTCCCAAT
AAACTTTGAATGGACAAAAGAATCGTTCTGCAATCATAAGCTGAAGACCA
CTTGTCCTGAAGGATGTCTAGGCATATGTTGCCATACTGATCAACATTTG
GATGGAAGCACATAGTTTCAAACTTGACTTGGGGTGGCTTGAAAGGATAA
TCCAGAGGAAAATGCAAAGAAAGTTTGTATGATAAACCCTCATACATAGT
TCCCTTTCCACCCTCAATTGTGCCAATCCAAGTGAAAATGCTCTCGCCTT
CAGGAAAGGCCGAGACCCCAAGATCACCTCCACTCATCATAAGAGACATC
AATTCCTTCTGAAGCCTTTGAGTAACGGATGTTGTATCGACGGTGTTAGG
AGAAGAGACAGGCTGCTTCGACGAAGCAGCGGCAGTTGCACGTAAATTTT
CAACCGTCGGATTTGGCCGCACCTCCATGATTAGCAAAGAAGAATCACTG
ATCAACGGCCGATGATCAATGACGATAATCAAGCCT
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