CN188231

Overview
NameCN188231
Unique NameCN188231
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBC13_YEAST (Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyces cerevisiae GN=UBC13 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.510e-21
Identity = 55/133 (41.35%), Postives = 83/133 (62.41%), Query Frame = -2
Query:  184 SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL-NSYAAALLNNKE 579
            S+ +R+ KE   L+ S    G++A P  +++  +  TIEG + + YE   ++L L+ P DYP + P+V+F T  +HPN+D+ G ICLD+L+  WS A   RT+LLSIQ+LL  PNP  PL N  A   + N++
Sbjct:    3 SLPKRIIKETEKLV-SDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQ 134          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBE2N_RAT (Ubiquitin-conjugating enzyme E2 N OS=Rattus norvegicus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.364e-21
Identity = 50/112 (44.64%), Postives = 70/112 (62.50%), Query Frame = -2
Query:  184 GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKE 519
            G+ A P+  +   +   I G + + +EG ++KL L  P +YP   P+V+F T  +HPNVD+ G ICLDIL+DKWS A   RT+LLSIQ+LL  PNP+ PL +  A    + E
Sbjct:   22 GIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKSNE 133          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBE2N_PONAB (Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii GN=UBE2N PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.393e-21
Identity = 48/100 (48.00%), Postives = 66/100 (66.00%), Query Frame = -2
Query:  220 GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL 519
            G+ A P+  +   +   I G + + +EG ++KL L  P +YP   P+V+F T  +HPNVD+ G ICLDIL+DKWS A   RT+LLSIQ+LL  PNP+ PL
Sbjct:   22 GIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 121          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBE2N_MOUSE (Ubiquitin-conjugating enzyme E2 N OS=Mus musculus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.393e-21
Identity = 48/100 (48.00%), Postives = 66/100 (66.00%), Query Frame = -2
Query:  220 GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL 519
            G+ A P+  +   +   I G + + +EG ++KL L  P +YP   P+V+F T  +HPNVD+ G ICLDIL+DKWS A   RT+LLSIQ+LL  PNP+ PL
Sbjct:   22 GIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 121          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBE2N_HUMAN (Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens GN=UBE2N PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.393e-21
Identity = 48/100 (48.00%), Postives = 66/100 (66.00%), Query Frame = -2
Query:  220 GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL 519
            G+ A P+  +   +   I G + + +EG ++KL L  P +YP   P+V+F T  +HPNVD+ G ICLDIL+DKWS A   RT+LLSIQ+LL  PNP+ PL
Sbjct:   22 GIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 121          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBE2N_BOVIN (Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN=UBE2N PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.393e-21
Identity = 48/100 (48.00%), Postives = 66/100 (66.00%), Query Frame = -2
Query:  220 GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL 519
            G+ A P+  +   +   I G + + +EG ++KL L  P +YP   P+V+F T  +HPNVD+ G ICLDIL+DKWS A   RT+LLSIQ+LL  PNP+ PL
Sbjct:   22 GIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 121          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBE2N_MACFA (Ubiquitin-conjugating enzyme E2 N OS=Macaca fascicularis GN=UBE2N PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.738e-21
Identity = 48/100 (48.00%), Postives = 66/100 (66.00%), Query Frame = -2
Query:  220 GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL 519
            G+ A P+  +   +   I G + + +EG ++KL L  P +YP   P+V+F T  +HPNVD+ G ICLDIL+DKWS A   RT+LLSIQ+LL  PNP+ PL
Sbjct:   22 GIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKSGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 121          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBC13_SCHPO (Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccharomyces pombe GN=ubc13 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.738e-21
Identity = 52/132 (39.39%), Postives = 79/132 (59.85%), Query Frame = -2
Query:  184 SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKE 579
            ++ +R+ KE+ +L       G+ A P  +++  +  T+EG + + YEG  + L L  P +YP  PP V+F T  +HPNVD+ G ICL  L+  WS A   RT+LLSIQ+L+G PNP+ PL++  A +    E
Sbjct:    2 ALPKRIIKEIETLTRDPPP-GIVAAPTEDNLRYFKITMEGPQQSAYEGGKFHLELFLPDEYPMMPPNVRFLTKIYHPNVDKLGRICLSTLKKDWSPALQIRTVLLSIQALMGAPNPDDPLDNDVAKIWKENE 132          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: COP10_ARATH (Constitutive photomorphogenesis protein 10 OS=Arabidopsis thaliana GN=COP10 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.738e-21
Identity = 63/176 (35.80%), Postives = 95/176 (53.98%), Query Frame = -2
Query:  154 VRPNPTVENLRATAAASSKQPVSSPNTVDTTSVT---QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQKQY 672
            +RP PT      +  ASS         V  TSV+   +R+Q+E+  L +       SA P+G++++ WI TI G  GT YEG  + L + FP DYPFKPP++ F+T  +H NVD  G++ ++IL+D WS A     +L +I+S+  +P P SP     A L     +    V K++
Sbjct:   10 LRPLPTAMYAGYSGTASS--------WVAKTSVSASGKRIQREMAELNIDPPP-DCSAGPKGDNLYHWIATIIGPSGTPYEGGIFFLDIIFPSDYPFKPPKLVFKTRIYHCNVDTAGDLSVNILRDSWSPALTITKVLQAIRSIFLKPEPYSPALPVIARLYLTDREKHDEVAKEW 176          
BLAST of CN188231 vs. ExPASy Swiss-Prot
Match: UBE2N_DICDI (Probable ubiquitin-conjugating enzyme E2 N OS=Dictyostelium discoideum GN=ube2n PE=3 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.278e-20
Identity = 52/120 (43.33%), Postives = 72/120 (60.00%), Query Frame = -2
Query:  220 SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL 579
            ++ +R+ KE   LM      G+SA P  ++   +   I G   + +EG  + L L    DYP   P+V+F T  +HPN+D+ G ICLDIL+DKWS A   RT+LLSIQ+LL  PNP+ PL
Sbjct:    3 TLPKRIIKETQRLMTEPAP-GISATPATDNFRYFKVAISGPLDSPFEGGVFNLELFLTDDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 121          
The following BLAST results are available for this feature:
BLAST of CN188231 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
UBC13_YEAST1.510e-2141.35Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyce... [more]
UBE2N_RAT3.364e-2144.64Ubiquitin-conjugating enzyme E2 N OS=Rattus norveg... [more]
UBE2N_PONAB4.393e-2148.00Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii ... [more]
UBE2N_MOUSE4.393e-2148.00Ubiquitin-conjugating enzyme E2 N OS=Mus musculus ... [more]
UBE2N_HUMAN4.393e-2148.00Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens ... [more]
UBE2N_BOVIN4.393e-2148.00Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN... [more]
UBE2N_MACFA5.738e-2148.00Ubiquitin-conjugating enzyme E2 N OS=Macaca fascic... [more]
UBC13_SCHPO5.738e-2139.39Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccha... [more]
COP10_ARATH5.738e-2135.80Constitutive photomorphogenesis protein 10 OS=Arab... [more]
UBE2N_DICDI1.278e-2043.33Probable ubiquitin-conjugating enzyme E2 N OS=Dict... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005L08_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005L08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188231 ID=CN188231; Name=CN188231; organism=Citrus sinensis; type=EST; length=736bp
TTTTTTGAACTTATGTAATCAGTTTTCATTGAAACAGTTCCAAACTGAAA
CAAGCCCTTCCCCTTGAGCTTTACAGAGAAATAATGTGGAAGCCTAACAT
CCGATTTTGTATCTGTTTTGCTGTTCAAATTAGCTCTCAAATTCTCCAGC
AAAGTACTGTTTCTGGACCATTTTTCTGTAATCTTCCTTATTGTTCAACA
GAGCTGCAGCATAGCTGTTGAGAGGGCTCTCTGGATTAGGCTCTCCCAAT
AAACTTTGAATGGACAAAAGAATCGTTCTGCAATCATAAGCTGAAGACCA
CTTGTCCTGAAGGATGTCTAGGCATATGTTGCCATACTGATCAACATTTG
GATGGAAGCACATAGTTTCAAACTTGACTTGGGGTGGCTTGAAAGGATAA
TCCAGAGGAAAATGCAAAGAAAGTTTGTATGATAAACCCTCATACATAGT
TCCCTTTCCACCCTCAATTGTGCCAATCCAAGTGAAAATGCTCTCGCCTT
CAGGAAAGGCCGAGACCCCAAGATCACCTCCACTCATCATAAGAGACATC
AATTCCTTCTGAAGCCTTTGAGTAACGGATGTTGTATCGACGGTGTTAGG
AGAAGAGACAGGCTGCTTCGACGAAGCAGCGGCAGTTGCACGTAAATTTT
CAACCGTCGGATTTGGCCGCACCTCCATGATTAGCAAAGAAGAATCACTG
ATCAACGGCCGATGATCAATGACGATAATCAAGCCT
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