CK939503

Overview
NameCK939503
Unique NameCK939503
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length799
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939503 vs. ExPASy Swiss-Prot
Match: NAD2_CAEEL (Sodium-dependent high-affinity dicarboxylate transporter 2 OS=Caenorhabditis elegans GN=nac-2 PE=2 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 1.126e-12
Identity = 37/123 (30.08%), Postives = 69/123 (56.10%), Query Frame = 1
Query:   58 LAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNLPE 426
            + ++  +W+ EA P+ +TS+ PL L+P+  I  +  ++  Y  D I L + + I+A+AVE   +H+R+AL    L        P++LLG    T+F+S ++ + A   +M P A  +L ++ +
Sbjct:   38 IIFLSTYWIGEAFPIGVTSLFPLALYPILQIVPSKQISPVYFKDSIVLFMCTLIMAMAVEATGLHRRIALK---LLTKVGAKQPVMLLGFMCITSFISFFVSDTACTALMCPTAVALLMSMSD 157          

HSP 2 Score: 68.9366 bits (167), Expect = 3.598e-11
Identity = 37/95 (38.95%), Postives = 55/95 (57.89%), Query Frame = 3
Query:  504 VCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAALAFLMPT 788
            V  I  I+TEF SN +T ++ +P+ + +A++M VHPL L +P  +   F+F+LP  TP N V + T  I + +MI  G  L IA I   +  M T
Sbjct:  430 VTTIIVIMTEFASNVSTGSIFIPISLGVAESMGVHPLYLALPTTVACSFAFMLPISTPPNAVVYDTKVISMVEMIVCGFLLNIACILITSLNMNT 524          
BLAST of CK939503 vs. ExPASy Swiss-Prot
Match: YBH4_SCHPO (Uncharacterized transporter C3B8.04c OS=Schizosaccharomyces pombe GN=SPBC3B8.04c PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.774e-11
Identity = 47/139 (33.81%), Postives = 65/139 (46.76%), Query Frame = 1
Query:   43 NMLGVLAWVFAWWLTEAVPMPITSMAPLFLF------------PLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNLP 423
            N L +L  V   W TEA+P+ +TS    F+             PL G  S   +  S  +  I L+LG F +A A+  Y+I KRLA   T +       P  +LL       F SMW+ NVAA V+   +   +L+NLP
Sbjct:  433 NCLALLVMVSLLWATEAIPLFVTSFLVPFMTVFLKILRDENGSPLSGKESTKVIFSSMWNPTIVLLLGGFTIAAALSKYHIAKRLA---TSILAHAGRKPRSVLLTNMFVAMFASMWISNVAAPVLCFSIIQPLLRNLP 568          
BLAST of CK939503 vs. ExPASy Swiss-Prot
Match: Y608_HAEIN (Uncharacterized transporter HI0608 OS=Haemophilus influenzae GN=HI0608 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.070e-11
Identity = 46/134 (34.33%), Postives = 65/134 (48.51%), Query Frame = 1
Query:   49 LGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNLPEVPLQSTLV 450
            L +LA++   WL+EA+ + IT++    L    G+ S       + D  I L  G F LA A+    + K +A  I  L  G      + L  I   TAF+SMWM N A A +M+P+A GIL  L      +T V
Sbjct:   40 LALLAFIAVLWLSEALHVTITALLVPLLAVALGLVSTKQALVGFADPTIFLFFGGFSLATALHIQKLDKLIANKIMALARGNLFIAVIYLFLI---TAFLSMWMSNTATAAMMLPLAMGILSQLDREKDHNTYV 170          
The following BLAST results are available for this feature:
BLAST of CK939503 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
NAD2_CAEEL1.126e-1230.08Sodium-dependent high-affinity dicarboxylate trans... [more]
YBH4_SCHPO2.774e-1133.81Uncharacterized transporter C3B8.04c OS=Schizosacc... [more]
Y608_HAEIN8.070e-1134.33Uncharacterized transporter HI0608 OS=Haemophilus ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004749_F11 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IF_F11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939503 ID=CK939503; Name=CK939503; organism=Citrus sinensis; type=EST; length=799bp
GGGTGTGTATGTGTGAAGCTCGATGGGCAGGCGACAAGCAGGAACATGTT
GGGTGTTCTTGCTTGGGTCTTCGCTTGGTGGCTCACGGAGGCCGTACCCA
TGCCCATTACCTCTATGGCGCCTCTGTTTCTGTTTCCTCTGTTTGGTATC
TCTTCTGCTGACACCGTTGCTCATTCTTACATGGATGATGTTATTGCCCT
CGTTCTTGGTAGCTTTATTCTTGCTCTTGCCGTTGAGCACTACAACATTC
ACAAAAGATTGGCCTTAAATATAACTATTCTATTCTGTGGAGAGCCAATG
AATCCGCCCTTGCTGCTTCTTGGGATATGTGGCACGACAGCATTCGTGAG
CATGTGGATGCATAACGTGGCAGCAGCAGTGATCATGATGCCAGTGGCCA
CTGGGATCTTACAGAACTTGCCAGAGGTTCCTCTTCAATCAACCCTTGTT
AGGAAGCATTGGATTTCCTGGAGGCGGCGCCATATTTAGCCATTGCACCT
ATCGTATGTCTGATTAGCGCGATTATTACTGAATTCACATCAAATAATGC
CACAACAACTCTCGTTCTTCCACTTCTGATCCAAATAGCAAAAACTATGC
ATGTTCATCCATTGCTTCTTATGGTTCCTGGAGCAATTGGAGCACAATTT
TCTTTCTTGTTGCCGACTGGAACCCCTTCAAATATTGTTGGATTCACAAC
CGGGCACATCGAAATTCAAGATATGATCAAGACAGGGCTGCCCCTTAAGA
TTGCTGGCATTGCTGCTCTGGCCTTTCTAATGCCTACACTTGGTGCTTA
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