CK939497 | Citrus Genome Database

Overview


Name	CK939497
Unique Name	CK939497
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	543

Libraries


Library Name	Type
Developing fruit flavedo at 165 DAFB	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CK939497 vs. ExPASy Swiss-Prot
Match: PSBI_NASOF (Photosystem II reaction center protein I OS=Nasturtium officinale GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.403e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CK939497 vs. ExPASy Swiss-Prot
Match: PSBI_NANDO (Photosystem II reaction center protein I OS=Nandina domestica GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.403e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CK939497 vs. ExPASy Swiss-Prot
Match: PSBI_MORIN (Photosystem II reaction center protein I OS=Morus indica GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.403e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CK939497 vs. ExPASy Swiss-Prot
Match: PSBI_MANES (Photosystem II reaction center protein I OS=Manihot esculenta GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.403e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CK939497 vs. ExPASy Swiss-Prot
Match: PSBI_MAIZE (Photosystem II reaction center protein I OS=Zea mays GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.403e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CK939497 vs. ExPASy Swiss-Prot
Match: PSBI_LOTJA (Photosystem II reaction center protein I OS=Lotus japonicus GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.403e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CK939497 vs. ExPASy Swiss-Prot
Match: PSBI_LOLPR (Photosystem II reaction center protein I OS=Lolium perenne GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.403e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CK939497 vs. ExPASy Swiss-Prot
Match: PSBI_LOBMA (Photosystem II reaction center protein I OS=Lobularia maritima GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.403e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CK939497 vs. ExPASy Swiss-Prot
Match: PSBI_LIRTU (Photosystem II reaction center protein I OS=Liriodendron tulipifera GN=psbI PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 1.403e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CK939497 vs. ExPASy Swiss-Prot
Match: PSBI_LEMMI (Photosystem II reaction center protein I OS=Lemna minor GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.403e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

The following BLAST results are available for this feature:

BLAST of CK939497 vs. ExPASy Swiss-Prot

BLAST of CK939497 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111


Match Name	E-value	Identity	Description
PSBI_NASOF	1.403e-13	100.00	Photosystem II reaction center protein I OS=Nastur...	[more]
PSBI_NANDO	1.403e-13	100.00	Photosystem II reaction center protein I OS=Nandin...	[more]
PSBI_MORIN	1.403e-13	100.00	Photosystem II reaction center protein I OS=Morus ...	[more]
PSBI_MANES	1.403e-13	100.00	Photosystem II reaction center protein I OS=Maniho...	[more]
PSBI_MAIZE	1.403e-13	100.00	Photosystem II reaction center protein I OS=Zea ma...	[more]
PSBI_LOTJA	1.403e-13	100.00	Photosystem II reaction center protein I OS=Lotus ...	[more]
PSBI_LOLPR	1.403e-13	100.00	Photosystem II reaction center protein I OS=Lolium...	[more]
PSBI_LOBMA	1.403e-13	100.00	Photosystem II reaction center protein I OS=Lobula...	[more]
PSBI_LIRTU	1.403e-13	100.00	Photosystem II reaction center protein I OS=Liriod...	[more]
PSBI_LEMMI	1.403e-13	100.00	Photosystem II reaction center protein I OS=Lemna ...	[more]

Pages

Properties


Property Name	Value
Genbank description	CGF1004749_H08 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IF_H08 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK939497 ID=CK939497; Name=CK939497; organism=Citrus sinensis; type=EST; length=543bp
GGGAACCAAAATGTAGAATTCTAATTGTGTGAATTTAATTTATGAAAACG
ATTTTCTATTTAGAGAATCAAATTCTAAAAAGAACTTCATTTCTTGATGT
CAAAATTGGATATGTAGTATAAAAATAGAGAATCTATTCTCTTTTTCCTT
TTCCCCAAAAACCTGATTTGGAGATTGTGTAATGCTTACTCTCAAACTCT
TTGTTTACACCGTAGTGATATTCTTTGTTTCGCTCTTCATCTTCGGATTC
CTGTCTAATGATCCAGGGCGTAATCCCGGACGCGAAGAATAAAAAAGGAA
GGAGTTGCTTACTTTATTCGTATAAACGTTCTTAGGATTTTTGATTCCCA
GTTACTATTAAAAATAAAGTAAAAGTGTTCGCTAAAGTTAAATTTGAAAA
ATACCAAGCCATCGCCCGAAACGGAAAGAGAGGGATTCGAACCCTCGGTA
CGAAGAACTCGTACACCGGATTAGCAATCCGACGCTTTAATCCACTTAGC
CATCTCTCCTAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA