CK939497 | Citrus Genome Database

Overview


Name	CK939497
Unique Name	CK939497
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	543

Libraries


Library Name	Type
Developing fruit flavedo at 165 DAFB	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CK939497 vs. ExPASy Swiss-Prot
Match: PSBI_CARPA (Photosystem II reaction center protein I OS=Carica papaya GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.403e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CK939497 vs. ExPASy Swiss-Prot
Match: PSBI_CAPBU (Photosystem II reaction center protein I OS=Capsella bursa-pastoris GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.403e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CK939497 vs. ExPASy Swiss-Prot
Match: PSBI_CALFG (Photosystem II reaction center protein I OS=Calycanthus floridus var. glaucus GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.403e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CK939497 vs. ExPASy Swiss-Prot
Match: PSBI_BUXMI (Photosystem II reaction center protein I OS=Buxus microphylla GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.403e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CK939497 vs. ExPASy Swiss-Prot
Match: PSBI_BRADI (Photosystem II reaction center protein I OS=Brachypodium distachyon GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.403e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CK939497 vs. ExPASy Swiss-Prot
Match: PSBI_BARVE (Photosystem II reaction center protein I OS=Barbarea verna GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.403e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CK939497 vs. ExPASy Swiss-Prot
Match: PSBI_ATRBE (Photosystem II reaction center protein I OS=Atropa belladonna GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.403e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CK939497 vs. ExPASy Swiss-Prot
Match: PSBI_ARATH (Photosystem II reaction center protein I OS=Arabidopsis thaliana GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.403e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CK939497 vs. ExPASy Swiss-Prot
Match: PSBI_ARAHI (Photosystem II reaction center protein I OS=Arabis hirsuta GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.403e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CK939497 vs. ExPASy Swiss-Prot
Match: PSBI_AGRST (Photosystem II reaction center protein I OS=Agrostis stolonifera GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.403e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:  182 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 289
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

The following BLAST results are available for this feature:

BLAST of CK939497 vs. ExPASy Swiss-Prot

BLAST of CK939497 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111


Match Name	E-value	Identity	Description
PSBI_CARPA	1.403e-13	100.00	Photosystem II reaction center protein I OS=Carica...	[more]
PSBI_CAPBU	1.403e-13	100.00	Photosystem II reaction center protein I OS=Capsel...	[more]
PSBI_CALFG	1.403e-13	100.00	Photosystem II reaction center protein I OS=Calyca...	[more]
PSBI_BUXMI	1.403e-13	100.00	Photosystem II reaction center protein I OS=Buxus ...	[more]
PSBI_BRADI	1.403e-13	100.00	Photosystem II reaction center protein I OS=Brachy...	[more]
PSBI_BARVE	1.403e-13	100.00	Photosystem II reaction center protein I OS=Barbar...	[more]
PSBI_ATRBE	1.403e-13	100.00	Photosystem II reaction center protein I OS=Atropa...	[more]
PSBI_ARATH	1.403e-13	100.00	Photosystem II reaction center protein I OS=Arabid...	[more]
PSBI_ARAHI	1.403e-13	100.00	Photosystem II reaction center protein I OS=Arabis...	[more]
PSBI_AGRST	1.403e-13	100.00	Photosystem II reaction center protein I OS=Agrost...	[more]

Pages

Properties


Property Name	Value
Genbank description	CGF1004749_H08 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IF_H08 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK939497 ID=CK939497; Name=CK939497; organism=Citrus sinensis; type=EST; length=543bp
GGGAACCAAAATGTAGAATTCTAATTGTGTGAATTTAATTTATGAAAACG
ATTTTCTATTTAGAGAATCAAATTCTAAAAAGAACTTCATTTCTTGATGT
CAAAATTGGATATGTAGTATAAAAATAGAGAATCTATTCTCTTTTTCCTT
TTCCCCAAAAACCTGATTTGGAGATTGTGTAATGCTTACTCTCAAACTCT
TTGTTTACACCGTAGTGATATTCTTTGTTTCGCTCTTCATCTTCGGATTC
CTGTCTAATGATCCAGGGCGTAATCCCGGACGCGAAGAATAAAAAAGGAA
GGAGTTGCTTACTTTATTCGTATAAACGTTCTTAGGATTTTTGATTCCCA
GTTACTATTAAAAATAAAGTAAAAGTGTTCGCTAAAGTTAAATTTGAAAA
ATACCAAGCCATCGCCCGAAACGGAAAGAGAGGGATTCGAACCCTCGGTA
CGAAGAACTCGTACACCGGATTAGCAATCCGACGCTTTAATCCACTTAGC
CATCTCTCCTAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA